Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04445 and LRK53_RS04450 are separated by 143 nucleotides LRK53_RS04450 and LRK53_RS04455 overlap by 4 nucleotides LRK53_RS04455 and LRK53_RS04460 are separated by 157 nucleotides LRK53_RS04460 and LRK53_RS04465 are separated by 124 nucleotides LRK53_RS04465 and LRK53_RS04470 overlap by 1 nucleotides LRK53_RS04470 and LRK53_RS04475 are separated by 102 nucleotides
LRK53_RS04445: LRK53_RS04445 - glycoside hydrolase family 99-like domain-containing protein, at 1,032,470 to 1,034,530
_RS04445
LRK53_RS04450: LRK53_RS04450 - transcriptional regulator, at 1,034,674 to 1,035,015
_RS04450
LRK53_RS04455: LRK53_RS04455 - DUF6516 family protein, at 1,035,012 to 1,035,299
_RS04455
LRK53_RS04460: LRK53_RS04460 - glycosyltransferase, at 1,035,457 to 1,037,436
_RS04460
LRK53_RS04465: LRK53_RS04465 - HigA family addiction module antitoxin, at 1,037,561 to 1,037,854
_RS04465
LRK53_RS04470: LRK53_RS04470 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,037,854 to 1,038,132
_RS04470
LRK53_RS04475: LRK53_RS04475 - electron transfer flavoprotein-ubiquinone oxidoreductase, at 1,038,235 to 1,039,845
_RS04475
Position (kb) 1035
1036
1037
1038 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1034.490 kb on - strand at 1034.675 kb on + strand at 1034.675 kb on + strand at 1034.676 kb on - strand at 1034.676 kb on - strand at 1034.718 kb on - strand, within LRK53_RS04450 at 1034.718 kb on - strand, within LRK53_RS04450 at 1034.729 kb on - strand, within LRK53_RS04450 at 1034.729 kb on - strand, within LRK53_RS04450 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.085 kb on + strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.086 kb on - strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.142 kb on + strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.143 kb on - strand, within LRK53_RS04455 at 1035.150 kb on + strand, within LRK53_RS04455 at 1035.150 kb on + strand, within LRK53_RS04455 at 1035.150 kb on + strand, within LRK53_RS04455 at 1035.151 kb on - strand, within LRK53_RS04455 at 1035.151 kb on - strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.184 kb on + strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.185 kb on - strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.190 kb on + strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.191 kb on - strand, within LRK53_RS04455 at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.311 kb on + strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.312 kb on - strand at 1035.338 kb on + strand at 1035.339 kb on - strand at 1035.448 kb on + strand at 1035.448 kb on + strand at 1035.448 kb on + strand at 1035.449 kb on - strand at 1035.697 kb on - strand, within LRK53_RS04460 at 1036.724 kb on + strand, within LRK53_RS04460 at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.862 kb on - strand at 1037.870 kb on + strand at 1037.870 kb on + strand at 1037.870 kb on + strand at 1037.870 kb on + strand at 1037.871 kb on - strand at 1037.871 kb on - strand at 1037.871 kb on - strand at 1037.882 kb on + strand, within LRK53_RS04470 at 1037.882 kb on + strand, within LRK53_RS04470 at 1037.882 kb on + strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1037.883 kb on - strand, within LRK53_RS04470 at 1038.248 kb on + strand at 1038.248 kb on + strand at 1038.248 kb on + strand at 1038.249 kb on - strand at 1038.249 kb on - strand at 1038.249 kb on - strand at 1038.296 kb on + strand at 1038.434 kb on + strand, within LRK53_RS04475 at 1038.434 kb on + strand, within LRK53_RS04475 at 1038.435 kb on - strand, within LRK53_RS04475 at 1038.435 kb on - strand, within LRK53_RS04475
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 1,034,490 - -1.4 1,034,675 + +0.1 1,034,675 + -0.9 1,034,676 - +0.2 1,034,676 - -1.5 1,034,718 - LRK53_RS04450 0.13 -1.0 1,034,718 - LRK53_RS04450 0.13 +0.5 1,034,729 - LRK53_RS04450 0.16 +0.0 1,034,729 - LRK53_RS04450 0.16 -1.6 1,035,085 + LRK53_RS04455 0.25 -0.9 1,035,085 + LRK53_RS04455 0.25 +0.2 1,035,085 + LRK53_RS04455 0.25 -0.2 1,035,085 + LRK53_RS04455 0.25 -1.1 1,035,085 + LRK53_RS04455 0.25 +0.3 1,035,086 - LRK53_RS04455 0.26 +0.4 1,035,086 - LRK53_RS04455 0.26 -1.4 1,035,086 - LRK53_RS04455 0.26 -0.5 1,035,086 - LRK53_RS04455 0.26 -0.8 1,035,086 - LRK53_RS04455 0.26 -0.6 1,035,086 - LRK53_RS04455 0.26 -1.8 1,035,086 - LRK53_RS04455 0.26 -1.8 1,035,142 + LRK53_RS04455 0.45 +0.5 1,035,142 + LRK53_RS04455 0.45 -0.6 1,035,142 + LRK53_RS04455 0.45 -1.4 1,035,142 + LRK53_RS04455 0.45 +0.2 1,035,142 + LRK53_RS04455 0.45 +0.2 1,035,142 + LRK53_RS04455 0.45 -0.2 1,035,142 + LRK53_RS04455 0.45 +1.7 1,035,142 + LRK53_RS04455 0.45 -1.2 1,035,143 - LRK53_RS04455 0.45 +0.0 1,035,143 - LRK53_RS04455 0.45 -0.3 1,035,143 - LRK53_RS04455 0.45 -0.5 1,035,143 - LRK53_RS04455 0.45 +0.2 1,035,143 - LRK53_RS04455 0.45 -0.7 1,035,150 + LRK53_RS04455 0.48 -1.2 1,035,150 + LRK53_RS04455 0.48 -0.4 1,035,150 + LRK53_RS04455 0.48 +0.7 1,035,151 - LRK53_RS04455 0.48 -1.9 1,035,151 - LRK53_RS04455 0.48 -0.2 1,035,184 + LRK53_RS04455 0.60 +0.2 1,035,184 + LRK53_RS04455 0.60 +1.3 1,035,184 + LRK53_RS04455 0.60 -0.5 1,035,184 + LRK53_RS04455 0.60 +0.3 1,035,184 + LRK53_RS04455 0.60 -1.9 1,035,184 + LRK53_RS04455 0.60 -0.0 1,035,184 + LRK53_RS04455 0.60 -0.5 1,035,184 + LRK53_RS04455 0.60 +0.4 1,035,184 + LRK53_RS04455 0.60 -1.2 1,035,184 + LRK53_RS04455 0.60 -1.3 1,035,184 + LRK53_RS04455 0.60 -0.5 1,035,184 + LRK53_RS04455 0.60 +1.0 1,035,184 + LRK53_RS04455 0.60 +0.2 1,035,184 + LRK53_RS04455 0.60 +0.7 1,035,184 + LRK53_RS04455 0.60 -0.6 1,035,184 + LRK53_RS04455 0.60 -0.5 1,035,184 + LRK53_RS04455 0.60 -0.8 1,035,184 + LRK53_RS04455 0.60 -0.0 1,035,184 + LRK53_RS04455 0.60 -0.3 1,035,185 - LRK53_RS04455 0.60 -0.8 1,035,185 - LRK53_RS04455 0.60 -0.6 1,035,185 - LRK53_RS04455 0.60 -2.5 1,035,185 - LRK53_RS04455 0.60 -1.3 1,035,185 - LRK53_RS04455 0.60 -0.6 1,035,185 - LRK53_RS04455 0.60 -2.2 1,035,185 - LRK53_RS04455 0.60 +0.8 1,035,185 - LRK53_RS04455 0.60 -1.4 1,035,185 - LRK53_RS04455 0.60 +0.9 1,035,185 - LRK53_RS04455 0.60 -0.3 1,035,185 - LRK53_RS04455 0.60 -0.0 1,035,185 - LRK53_RS04455 0.60 -0.7 1,035,185 - LRK53_RS04455 0.60 +1.3 1,035,185 - LRK53_RS04455 0.60 -1.7 1,035,185 - LRK53_RS04455 0.60 -1.0 1,035,185 - LRK53_RS04455 0.60 +0.2 1,035,185 - LRK53_RS04455 0.60 -1.3 1,035,185 - LRK53_RS04455 0.60 -0.5 1,035,185 - LRK53_RS04455 0.60 +1.6 1,035,185 - LRK53_RS04455 0.60 -0.2 1,035,185 - LRK53_RS04455 0.60 -0.6 1,035,185 - LRK53_RS04455 0.60 -0.6 1,035,185 - LRK53_RS04455 0.60 -0.6 1,035,185 - LRK53_RS04455 0.60 -0.3 1,035,190 + LRK53_RS04455 0.62 -0.8 1,035,190 + LRK53_RS04455 0.62 -1.3 1,035,190 + LRK53_RS04455 0.62 -1.6 1,035,190 + LRK53_RS04455 0.62 -0.5 1,035,190 + LRK53_RS04455 0.62 +0.4 1,035,190 + LRK53_RS04455 0.62 -0.4 1,035,190 + LRK53_RS04455 0.62 -1.5 1,035,190 + LRK53_RS04455 0.62 -0.9 1,035,190 + LRK53_RS04455 0.62 -2.0 1,035,190 + LRK53_RS04455 0.62 -1.2 1,035,190 + LRK53_RS04455 0.62 -0.5 1,035,190 + LRK53_RS04455 0.62 +1.4 1,035,190 + LRK53_RS04455 0.62 +0.4 1,035,190 + LRK53_RS04455 0.62 -1.6 1,035,190 + LRK53_RS04455 0.62 -0.2 1,035,190 + LRK53_RS04455 0.62 +0.1 1,035,190 + LRK53_RS04455 0.62 -1.2 1,035,191 - LRK53_RS04455 0.62 -3.5 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 -0.8 1,035,191 - LRK53_RS04455 0.62 +1.4 1,035,191 - LRK53_RS04455 0.62 -0.6 1,035,191 - LRK53_RS04455 0.62 -0.7 1,035,191 - LRK53_RS04455 0.62 +0.3 1,035,191 - LRK53_RS04455 0.62 +1.4 1,035,191 - LRK53_RS04455 0.62 -2.0 1,035,191 - LRK53_RS04455 0.62 +0.1 1,035,191 - LRK53_RS04455 0.62 +0.4 1,035,191 - LRK53_RS04455 0.62 -0.0 1,035,191 - LRK53_RS04455 0.62 +1.1 1,035,191 - LRK53_RS04455 0.62 -0.2 1,035,191 - LRK53_RS04455 0.62 -2.2 1,035,191 - LRK53_RS04455 0.62 +0.2 1,035,191 - LRK53_RS04455 0.62 +0.5 1,035,191 - LRK53_RS04455 0.62 -0.2 1,035,311 + +0.4 1,035,311 + -0.3 1,035,311 + -0.7 1,035,311 + +0.1 1,035,311 + -0.5 1,035,311 + -0.9 1,035,311 + +0.2 1,035,312 - -0.2 1,035,312 - -0.5 1,035,312 - +0.7 1,035,312 - +0.3 1,035,312 - -1.6 1,035,312 - +1.4 1,035,312 - -1.5 1,035,312 - -2.2 1,035,338 + -1.3 1,035,339 - -0.2 1,035,448 + -0.6 1,035,448 + -2.1 1,035,448 + +0.3 1,035,449 - -0.8 1,035,697 - LRK53_RS04460 0.12 +0.2 1,036,724 + LRK53_RS04460 0.64 -1.0 1,037,862 - -0.7 1,037,862 - -0.2 1,037,862 - +0.6 1,037,862 - -1.6 1,037,862 - +0.9 1,037,862 - +0.4 1,037,862 - -1.5 1,037,862 - -1.7 1,037,862 - -0.1 1,037,862 - +0.9 1,037,870 + -0.3 1,037,870 + -0.3 1,037,870 + -1.2 1,037,870 + -1.4 1,037,871 - +0.2 1,037,871 - -0.3 1,037,871 - -0.7 1,037,882 + LRK53_RS04470 0.10 +0.2 1,037,882 + LRK53_RS04470 0.10 -2.1 1,037,882 + LRK53_RS04470 0.10 -1.4 1,037,883 - LRK53_RS04470 0.10 -0.6 1,037,883 - LRK53_RS04470 0.10 -0.5 1,037,883 - LRK53_RS04470 0.10 -1.9 1,037,883 - LRK53_RS04470 0.10 -1.2 1,037,883 - LRK53_RS04470 0.10 -1.6 1,037,883 - LRK53_RS04470 0.10 -1.9 1,037,883 - LRK53_RS04470 0.10 -1.6 1,037,883 - LRK53_RS04470 0.10 -0.3 1,038,248 + -0.9 1,038,248 + -0.7 1,038,248 + -2.0 1,038,249 - -1.0 1,038,249 - -1.1 1,038,249 - -1.1 1,038,296 + -0.6 1,038,434 + LRK53_RS04475 0.12 -0.2 1,038,434 + LRK53_RS04475 0.12 -0.0 1,038,435 - LRK53_RS04475 0.12 +0.4 1,038,435 - LRK53_RS04475 0.12 +0.2
Or see this region's nucleotide sequence