Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03935 and LRK53_RS03940 are separated by 63 nucleotides LRK53_RS03940 and LRK53_RS03945 are separated by 27 nucleotides LRK53_RS03945 and LRK53_RS03950 overlap by 14 nucleotides LRK53_RS03950 and LRK53_RS03955 are separated by 7 nucleotides
LRK53_RS03935: LRK53_RS03935 - lipid-binding SYLF domain-containing protein, at 922,876 to 923,565
_RS03935
LRK53_RS03940: LRK53_RS03940 - twin-arginine translocase TatA/TatE family subunit, at 923,629 to 923,868
_RS03940
LRK53_RS03945: LRK53_RS03945 - Sec-independent protein translocase protein TatB, at 923,896 to 924,336
_RS03945
LRK53_RS03950: LRK53_RS03950 - twin-arginine translocase subunit TatC, at 924,323 to 925,081
_RS03950
LRK53_RS03955: LRK53_RS03955 - primosomal protein N', at 925,089 to 927,263
_RS03955
Position (kb) 924
925
926 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.368 kb on + strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.369 kb on - strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.374 kb on + strand, within LRK53_RS03935 at 923.375 kb on - strand, within LRK53_RS03935 at 923.375 kb on - strand, within LRK53_RS03935 at 923.375 kb on - strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.437 kb on + strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.438 kb on - strand, within LRK53_RS03935 at 923.458 kb on + strand, within LRK53_RS03935 at 923.459 kb on - strand, within LRK53_RS03935 at 923.459 kb on - strand, within LRK53_RS03935 at 923.459 kb on - strand, within LRK53_RS03935 at 923.459 kb on - strand, within LRK53_RS03935 at 923.459 kb on - strand, within LRK53_RS03935 at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.551 kb on + strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.552 kb on - strand at 923.617 kb on + strand at 923.617 kb on + strand at 923.617 kb on + strand at 923.866 kb on + strand at 923.866 kb on + strand at 923.866 kb on + strand at 923.866 kb on + strand at 923.866 kb on + strand at 923.866 kb on + strand at 923.866 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 923,368 + LRK53_RS03935 0.71 +1.4 923,368 + LRK53_RS03935 0.71 +0.0 923,368 + LRK53_RS03935 0.71 -0.1 923,368 + LRK53_RS03935 0.71 -0.6 923,368 + LRK53_RS03935 0.71 -0.9 923,368 + LRK53_RS03935 0.71 -1.5 923,368 + LRK53_RS03935 0.71 -1.6 923,368 + LRK53_RS03935 0.71 -0.8 923,368 + LRK53_RS03935 0.71 +0.6 923,368 + LRK53_RS03935 0.71 -2.2 923,368 + LRK53_RS03935 0.71 -1.3 923,368 + LRK53_RS03935 0.71 -1.1 923,368 + LRK53_RS03935 0.71 +2.0 923,368 + LRK53_RS03935 0.71 +0.2 923,368 + LRK53_RS03935 0.71 -0.3 923,368 + LRK53_RS03935 0.71 -2.0 923,369 - LRK53_RS03935 0.71 -0.1 923,369 - LRK53_RS03935 0.71 -2.3 923,369 - LRK53_RS03935 0.71 -1.5 923,369 - LRK53_RS03935 0.71 -0.6 923,369 - LRK53_RS03935 0.71 +0.0 923,369 - LRK53_RS03935 0.71 -1.0 923,369 - LRK53_RS03935 0.71 +0.4 923,369 - LRK53_RS03935 0.71 -0.6 923,369 - LRK53_RS03935 0.71 -1.2 923,369 - LRK53_RS03935 0.71 -3.2 923,369 - LRK53_RS03935 0.71 -0.7 923,369 - LRK53_RS03935 0.71 +2.4 923,369 - LRK53_RS03935 0.71 -1.8 923,369 - LRK53_RS03935 0.71 -1.5 923,369 - LRK53_RS03935 0.71 -1.0 923,374 + LRK53_RS03935 0.72 -0.4 923,374 + LRK53_RS03935 0.72 -1.1 923,374 + LRK53_RS03935 0.72 +0.5 923,374 + LRK53_RS03935 0.72 -2.0 923,374 + LRK53_RS03935 0.72 +0.4 923,374 + LRK53_RS03935 0.72 -0.7 923,374 + LRK53_RS03935 0.72 -2.1 923,374 + LRK53_RS03935 0.72 +0.1 923,374 + LRK53_RS03935 0.72 -2.3 923,374 + LRK53_RS03935 0.72 -1.8 923,375 - LRK53_RS03935 0.72 -0.0 923,375 - LRK53_RS03935 0.72 -0.9 923,375 - LRK53_RS03935 0.72 -1.0 923,437 + LRK53_RS03935 0.81 -0.6 923,437 + LRK53_RS03935 0.81 -1.4 923,437 + LRK53_RS03935 0.81 -0.9 923,437 + LRK53_RS03935 0.81 -0.6 923,437 + LRK53_RS03935 0.81 -0.0 923,437 + LRK53_RS03935 0.81 -1.6 923,437 + LRK53_RS03935 0.81 -2.0 923,437 + LRK53_RS03935 0.81 -2.1 923,437 + LRK53_RS03935 0.81 -1.4 923,437 + LRK53_RS03935 0.81 -0.4 923,438 - LRK53_RS03935 0.81 +0.7 923,438 - LRK53_RS03935 0.81 -1.3 923,438 - LRK53_RS03935 0.81 -1.6 923,438 - LRK53_RS03935 0.81 -2.0 923,438 - LRK53_RS03935 0.81 +0.2 923,438 - LRK53_RS03935 0.81 -1.1 923,438 - LRK53_RS03935 0.81 -1.3 923,458 + LRK53_RS03935 0.84 -1.4 923,459 - LRK53_RS03935 0.84 -0.8 923,459 - LRK53_RS03935 0.84 -0.6 923,459 - LRK53_RS03935 0.84 -1.5 923,459 - LRK53_RS03935 0.84 -1.1 923,459 - LRK53_RS03935 0.84 +1.8 923,551 + -0.8 923,551 + -1.6 923,551 + -2.0 923,551 + -0.4 923,551 + -0.7 923,551 + -1.4 923,551 + +0.2 923,551 + -1.0 923,551 + +0.8 923,551 + -0.3 923,551 + -1.6 923,551 + -0.7 923,552 - -1.0 923,552 - -0.6 923,552 - -0.8 923,552 - -0.1 923,552 - +1.0 923,552 - -1.2 923,552 - +0.5 923,552 - -0.8 923,552 - -2.3 923,552 - +1.0 923,552 - -1.1 923,552 - -1.9 923,617 + -1.1 923,617 + +0.0 923,617 + -1.4 923,866 + -1.1 923,866 + -2.3 923,866 + -3.8 923,866 + -0.9 923,866 + -0.9 923,866 + -1.7 923,866 + +0.5
Or see this region's nucleotide sequence