Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03700 and LRK53_RS03705 are separated by 188 nucleotides LRK53_RS03705 and LRK53_RS03710 are separated by 382 nucleotides
LRK53_RS03700: LRK53_RS03700 - transcription termination factor Rho, at 872,622 to 874,406
_RS03700
LRK53_RS03705: LRK53_RS03705 - thioredoxin TrxA, at 874,595 to 874,921
_RS03705
LRK53_RS03710: LRK53_RS03710 - DEAD/DEAH box helicase, at 875,304 to 877,055
_RS03710
Position (kb) 874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 874.194 kb on + strand, within LRK53_RS03700 at 874.507 kb on + strand at 874.508 kb on - strand at 874.508 kb on - strand at 874.508 kb on - strand at 874.508 kb on - strand at 874.508 kb on - strand at 874.508 kb on - strand at 874.529 kb on + strand at 874.530 kb on - strand at 874.530 kb on - strand at 874.530 kb on - strand at 874.530 kb on - strand at 874.530 kb on - strand at 875.024 kb on + strand at 875.144 kb on + strand at 875.144 kb on + strand at 875.144 kb on + strand at 875.145 kb on - strand at 875.145 kb on - strand at 875.145 kb on - strand at 875.145 kb on - strand at 875.145 kb on - strand at 875.290 kb on + strand at 875.290 kb on + strand at 875.291 kb on - strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.303 kb on + strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.304 kb on - strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.317 kb on + strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.318 kb on - strand at 875.328 kb on - strand at 875.328 kb on - strand at 875.332 kb on - strand at 875.658 kb on + strand, within LRK53_RS03710 at 875.658 kb on + strand, within LRK53_RS03710 at 875.658 kb on + strand, within LRK53_RS03710 at 875.658 kb on + strand, within LRK53_RS03710 at 875.658 kb on + strand, within LRK53_RS03710 at 875.659 kb on - strand, within LRK53_RS03710 at 875.673 kb on + strand, within LRK53_RS03710 at 875.673 kb on + strand, within LRK53_RS03710 at 875.673 kb on + strand, within LRK53_RS03710 at 875.673 kb on + strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.674 kb on - strand, within LRK53_RS03710 at 875.745 kb on + strand, within LRK53_RS03710 at 875.745 kb on + strand, within LRK53_RS03710 at 875.745 kb on + strand, within LRK53_RS03710 at 875.745 kb on + strand, within LRK53_RS03710 at 875.745 kb on + strand, within LRK53_RS03710 at 875.745 kb on + strand, within LRK53_RS03710 at 875.746 kb on - strand, within LRK53_RS03710 at 875.746 kb on - strand, within LRK53_RS03710 at 875.746 kb on - strand, within LRK53_RS03710 at 875.746 kb on - strand, within LRK53_RS03710 at 875.746 kb on - strand, within LRK53_RS03710
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 874,194 + LRK53_RS03700 0.88 -0.9 874,507 + -0.1 874,508 - -0.7 874,508 - -0.7 874,508 - -3.1 874,508 - -0.5 874,508 - -1.9 874,508 - +1.3 874,529 + -1.0 874,530 - -0.7 874,530 - -2.3 874,530 - +3.0 874,530 - -1.5 874,530 - +0.6 875,024 + +0.6 875,144 + -1.1 875,144 + -0.1 875,144 + -1.0 875,145 - +0.0 875,145 - -1.2 875,145 - +1.0 875,145 - -1.9 875,145 - -0.6 875,290 + -1.0 875,290 + -1.0 875,291 - -1.0 875,303 + -2.0 875,303 + -1.4 875,303 + -1.0 875,303 + +0.0 875,303 + -0.3 875,303 + -0.4 875,303 + -0.8 875,303 + -0.5 875,303 + -1.4 875,303 + -0.9 875,303 + -0.9 875,303 + +0.2 875,303 + -1.9 875,303 + +0.6 875,303 + -1.4 875,303 + +0.2 875,304 - -0.5 875,304 - -1.6 875,304 - -2.2 875,304 - +1.6 875,304 - +0.1 875,304 - -0.9 875,304 - -1.7 875,304 - -2.3 875,304 - -3.4 875,304 - -1.4 875,304 - -0.9 875,304 - -1.9 875,304 - -1.4 875,304 - +0.7 875,304 - -1.3 875,304 - +1.2 875,304 - -1.5 875,304 - -1.4 875,304 - -1.4 875,304 - -0.6 875,304 - +0.8 875,304 - -1.6 875,304 - +0.9 875,304 - +1.0 875,304 - -0.6 875,304 - -0.4 875,304 - -0.9 875,304 - -0.4 875,304 - -1.5 875,304 - +1.1 875,304 - -0.3 875,304 - -0.6 875,304 - -0.4 875,317 + -0.0 875,317 + -2.7 875,317 + -0.8 875,317 + -0.3 875,317 + -0.4 875,317 + +2.0 875,317 + -0.1 875,317 + -0.4 875,317 + -1.5 875,317 + +0.1 875,317 + -2.3 875,317 + -1.0 875,317 + +0.7 875,317 + +0.1 875,318 - -1.8 875,318 - -0.9 875,318 - -0.7 875,318 - -1.4 875,318 - -0.6 875,318 - -1.6 875,318 - -0.7 875,318 - +0.2 875,318 - -1.6 875,318 - -1.7 875,318 - -1.2 875,318 - +1.2 875,318 - -1.2 875,328 - -1.4 875,328 - +0.7 875,332 - -1.5 875,658 + LRK53_RS03710 0.20 -1.9 875,658 + LRK53_RS03710 0.20 -1.9 875,658 + LRK53_RS03710 0.20 -0.8 875,658 + LRK53_RS03710 0.20 -1.0 875,658 + LRK53_RS03710 0.20 -1.2 875,659 - LRK53_RS03710 0.20 -1.8 875,673 + LRK53_RS03710 0.21 -0.5 875,673 + LRK53_RS03710 0.21 +0.1 875,673 + LRK53_RS03710 0.21 -0.8 875,673 + LRK53_RS03710 0.21 -0.9 875,674 - LRK53_RS03710 0.21 -2.1 875,674 - LRK53_RS03710 0.21 -1.8 875,674 - LRK53_RS03710 0.21 +3.0 875,674 - LRK53_RS03710 0.21 -1.9 875,674 - LRK53_RS03710 0.21 -0.9 875,674 - LRK53_RS03710 0.21 -0.8 875,674 - LRK53_RS03710 0.21 -2.5 875,674 - LRK53_RS03710 0.21 +0.6 875,745 + LRK53_RS03710 0.25 -1.9 875,745 + LRK53_RS03710 0.25 -0.9 875,745 + LRK53_RS03710 0.25 -1.2 875,745 + LRK53_RS03710 0.25 -0.1 875,745 + LRK53_RS03710 0.25 -0.6 875,745 + LRK53_RS03710 0.25 -1.7 875,746 - LRK53_RS03710 0.25 -1.3 875,746 - LRK53_RS03710 0.25 +0.0 875,746 - LRK53_RS03710 0.25 -0.5 875,746 - LRK53_RS03710 0.25 -1.1 875,746 - LRK53_RS03710 0.25 -1.4
Or see this region's nucleotide sequence