Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03685

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03680 and LRK53_RS03685 are separated by 156 nucleotidesLRK53_RS03685 and LRK53_RS03690 are separated by 832 nucleotides LRK53_RS03680: LRK53_RS03680 - S53 family peptidase, at 866,149 to 867,783 _RS03680 LRK53_RS03685: LRK53_RS03685 - porphobilinogen synthase, at 867,940 to 868,932 _RS03685 LRK53_RS03690: LRK53_RS03690 - dihydroorotase, at 869,765 to 870,802 _RS03690 Position (kb) 867 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.996 kb on + strand, within LRK53_RS03680at 866.997 kb on - strand, within LRK53_RS03680at 866.997 kb on - strand, within LRK53_RS03680at 866.997 kb on - strand, within LRK53_RS03680at 867.026 kb on + strand, within LRK53_RS03680at 867.026 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.176 kb on + strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.177 kb on - strand, within LRK53_RS03680at 867.180 kb on + strand, within LRK53_RS03680at 867.180 kb on + strand, within LRK53_RS03680at 867.180 kb on + strand, within LRK53_RS03680at 867.181 kb on - strand, within LRK53_RS03680at 867.181 kb on - strand, within LRK53_RS03680at 867.181 kb on - strand, within LRK53_RS03680at 867.266 kb on + strand, within LRK53_RS03680at 867.266 kb on + strand, within LRK53_RS03680at 867.266 kb on + strand, within LRK53_RS03680at 867.267 kb on - strand, within LRK53_RS03680at 867.267 kb on - strand, within LRK53_RS03680at 867.267 kb on - strand, within LRK53_RS03680at 867.293 kb on + strand, within LRK53_RS03680at 867.293 kb on + strand, within LRK53_RS03680at 867.293 kb on + strand, within LRK53_RS03680at 867.293 kb on + strand, within LRK53_RS03680at 867.293 kb on + strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.294 kb on - strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.416 kb on + strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.417 kb on - strand, within LRK53_RS03680at 867.444 kb on - strand, within LRK53_RS03680at 867.722 kb on + strandat 867.722 kb on + strandat 867.722 kb on + strandat 867.722 kb on + strandat 867.723 kb on - strandat 867.723 kb on - strandat 867.723 kb on - strandat 867.723 kb on - strandat 867.723 kb on - strandat 867.723 kb on - strandat 867.843 kb on + strandat 867.843 kb on + strandat 867.844 kb on - strandat 867.907 kb on - strandat 867.920 kb on - strandat 867.920 kb on - strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.930 kb on + strandat 868.931 kb on - strandat 868.931 kb on - strandat 868.954 kb on + strandat 868.954 kb on + strandat 868.954 kb on + strandat 868.954 kb on + strandat 868.954 kb on + strandat 868.955 kb on - strandat 868.955 kb on - strandat 868.955 kb on - strandat 868.955 kb on - strandat 869.037 kb on - strandat 869.037 kb on - strandat 869.037 kb on - strandat 869.037 kb on - strandat 869.037 kb on - strandat 869.647 kb on + strandat 869.647 kb on + strandat 869.647 kb on + strandat 869.781 kb on + strandat 869.781 kb on + strandat 869.782 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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866,996 + LRK53_RS03680 0.52 -1.0
866,996 + LRK53_RS03680 0.52 +0.2
866,996 + LRK53_RS03680 0.52 -1.5
866,996 + LRK53_RS03680 0.52 -1.1
866,996 + LRK53_RS03680 0.52 -1.6
866,996 + LRK53_RS03680 0.52 -0.8
866,996 + LRK53_RS03680 0.52 +0.7
866,996 + LRK53_RS03680 0.52 -0.9
866,996 + LRK53_RS03680 0.52 +0.0
866,997 - LRK53_RS03680 0.52 -0.7
866,997 - LRK53_RS03680 0.52 +1.2
866,997 - LRK53_RS03680 0.52 -0.7
867,026 + LRK53_RS03680 0.54 -0.1
867,026 + LRK53_RS03680 0.54 -1.7
867,176 + LRK53_RS03680 0.63 -0.1
867,176 + LRK53_RS03680 0.63 -1.9
867,176 + LRK53_RS03680 0.63 -1.0
867,176 + LRK53_RS03680 0.63 -0.8
867,176 + LRK53_RS03680 0.63 -0.0
867,176 + LRK53_RS03680 0.63 +1.9
867,176 + LRK53_RS03680 0.63 -1.5
867,176 + LRK53_RS03680 0.63 -0.4
867,176 + LRK53_RS03680 0.63 -2.7
867,176 + LRK53_RS03680 0.63 -0.9
867,176 + LRK53_RS03680 0.63 -2.0
867,176 + LRK53_RS03680 0.63 +1.5
867,176 + LRK53_RS03680 0.63 -0.9
867,176 + LRK53_RS03680 0.63 -0.7
867,176 + LRK53_RS03680 0.63 -0.4
867,176 + LRK53_RS03680 0.63 -0.3
867,176 + LRK53_RS03680 0.63 -2.5
867,176 + LRK53_RS03680 0.63 +0.3
867,176 + LRK53_RS03680 0.63 +0.7
867,176 + LRK53_RS03680 0.63 -0.3
867,176 + LRK53_RS03680 0.63 -1.4
867,176 + LRK53_RS03680 0.63 -1.8
867,176 + LRK53_RS03680 0.63 +0.2
867,176 + LRK53_RS03680 0.63 -1.1
867,176 + LRK53_RS03680 0.63 -1.7
867,176 + LRK53_RS03680 0.63 -1.1
867,177 - LRK53_RS03680 0.63 +0.5
867,177 - LRK53_RS03680 0.63 -2.2
867,177 - LRK53_RS03680 0.63 -0.3
867,177 - LRK53_RS03680 0.63 -2.8
867,177 - LRK53_RS03680 0.63 -0.5
867,177 - LRK53_RS03680 0.63 +0.1
867,177 - LRK53_RS03680 0.63 -0.4
867,177 - LRK53_RS03680 0.63 -2.1
867,177 - LRK53_RS03680 0.63 -1.4
867,177 - LRK53_RS03680 0.63 -1.0
867,177 - LRK53_RS03680 0.63 +0.0
867,177 - LRK53_RS03680 0.63 -1.2
867,177 - LRK53_RS03680 0.63 -0.1
867,177 - LRK53_RS03680 0.63 -1.5
867,177 - LRK53_RS03680 0.63 -0.8
867,177 - LRK53_RS03680 0.63 -1.4
867,177 - LRK53_RS03680 0.63 +2.2
867,177 - LRK53_RS03680 0.63 +0.1
867,177 - LRK53_RS03680 0.63 -1.8
867,177 - LRK53_RS03680 0.63 -0.5
867,180 + LRK53_RS03680 0.63 -0.5
867,180 + LRK53_RS03680 0.63 -0.6
867,180 + LRK53_RS03680 0.63 +0.0
867,181 - LRK53_RS03680 0.63 -0.3
867,181 - LRK53_RS03680 0.63 -0.6
867,181 - LRK53_RS03680 0.63 -0.5
867,266 + LRK53_RS03680 0.68 -1.9
867,266 + LRK53_RS03680 0.68 -1.0
867,266 + LRK53_RS03680 0.68 -2.4
867,267 - LRK53_RS03680 0.68 -2.4
867,267 - LRK53_RS03680 0.68 -1.2
867,267 - LRK53_RS03680 0.68 -1.7
867,293 + LRK53_RS03680 0.70 -0.5
867,293 + LRK53_RS03680 0.70 -1.1
867,293 + LRK53_RS03680 0.70 -2.2
867,293 + LRK53_RS03680 0.70 +0.0
867,293 + LRK53_RS03680 0.70 -1.6
867,294 - LRK53_RS03680 0.70 -0.3
867,294 - LRK53_RS03680 0.70 -3.1
867,294 - LRK53_RS03680 0.70 -0.2
867,294 - LRK53_RS03680 0.70 +1.0
867,294 - LRK53_RS03680 0.70 -0.0
867,294 - LRK53_RS03680 0.70 +0.4
867,294 - LRK53_RS03680 0.70 +0.5
867,416 + LRK53_RS03680 0.77 +0.2
867,416 + LRK53_RS03680 0.77 +0.0
867,416 + LRK53_RS03680 0.77 -1.3
867,416 + LRK53_RS03680 0.77 +1.2
867,416 + LRK53_RS03680 0.77 -0.4
867,416 + LRK53_RS03680 0.77 -0.5
867,416 + LRK53_RS03680 0.77 -1.2
867,417 - LRK53_RS03680 0.78 -1.0
867,417 - LRK53_RS03680 0.78 -1.1
867,417 - LRK53_RS03680 0.78 -2.2
867,417 - LRK53_RS03680 0.78 +0.0
867,417 - LRK53_RS03680 0.78 -1.0
867,417 - LRK53_RS03680 0.78 -0.7
867,417 - LRK53_RS03680 0.78 -1.5
867,417 - LRK53_RS03680 0.78 +1.0
867,444 - LRK53_RS03680 0.79 -0.3
867,722 + -1.4
867,722 + +0.2
867,722 + -0.7
867,722 + -2.1
867,723 - -0.2
867,723 - +0.3
867,723 - -0.9
867,723 - -0.5
867,723 - +1.7
867,723 - -0.5
867,843 + -0.9
867,843 + -0.1
867,844 - -0.1
867,907 - +0.0
867,920 - -0.1
867,920 - +0.7
868,930 + -0.2
868,930 + -3.3
868,930 + +1.8
868,930 + +0.2
868,930 + -1.7
868,930 + +0.2
868,930 + -0.8
868,930 + -1.5
868,931 - -0.8
868,931 - -1.2
868,954 + +0.0
868,954 + -0.3
868,954 + +0.5
868,954 + -2.2
868,954 + +1.5
868,955 - -0.4
868,955 - -0.5
868,955 - -2.3
868,955 - +0.0
869,037 - +1.5
869,037 - -1.3
869,037 - +0.0
869,037 - -0.1
869,037 - -1.7
869,647 + -3.7
869,647 + -1.3
869,647 + -0.2
869,781 + -0.5
869,781 + -0.5
869,782 - -0.5

Or see this region's nucleotide sequence