Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03585 and LRK53_RS03590 are separated by 125 nucleotides LRK53_RS03590 and LRK53_RS03595 are separated by 22 nucleotides LRK53_RS03595 and LRK53_RS03600 are separated by 110 nucleotides LRK53_RS03600 and LRK53_RS03605 are separated by 250 nucleotides
LRK53_RS03585: LRK53_RS03585 - tryptophan 7-halogenase, at 847,331 to 848,641
_RS03585
LRK53_RS03590: LRK53_RS03590 - thymidine kinase, at 848,767 to 849,399
_RS03590
LRK53_RS03595: LRK53_RS03595 - hypothetical protein, at 849,422 to 850,189
_RS03595
LRK53_RS03600: LRK53_RS03600 - nitroreductase family protein, at 850,300 to 850,899
_RS03600
LRK53_RS03605: LRK53_RS03605 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 851,150 to 851,977
_RS03605
Position (kb) 849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 848.549 kb on + strand at 848.549 kb on + strand at 848.550 kb on - strand at 848.550 kb on - strand at 848.639 kb on + strand at 848.639 kb on + strand at 848.640 kb on - strand at 848.640 kb on - strand at 848.646 kb on + strand at 848.654 kb on - strand at 848.654 kb on - strand at 848.738 kb on + strand at 848.739 kb on - strand at 848.739 kb on - strand at 848.745 kb on + strand at 848.752 kb on + strand at 848.753 kb on - strand at 848.753 kb on - strand at 848.779 kb on + strand at 848.779 kb on + strand at 848.779 kb on + strand at 848.779 kb on + strand at 848.780 kb on - strand at 848.780 kb on - strand at 848.780 kb on - strand at 848.780 kb on - strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.785 kb on + strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.786 kb on - strand at 848.789 kb on - strand at 848.789 kb on - strand at 848.836 kb on + strand, within LRK53_RS03590 at 848.836 kb on + strand, within LRK53_RS03590 at 848.836 kb on + strand, within LRK53_RS03590 at 848.836 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.842 kb on + strand, within LRK53_RS03590 at 848.843 kb on - strand, within LRK53_RS03590 at 848.843 kb on - strand, within LRK53_RS03590 at 849.110 kb on - strand, within LRK53_RS03590 at 849.110 kb on - strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.556 kb on + strand, within LRK53_RS03600 at 850.556 kb on + strand, within LRK53_RS03600 at 850.557 kb on - strand, within LRK53_RS03600 at 850.557 kb on - strand, within LRK53_RS03600 at 850.557 kb on - strand, within LRK53_RS03600 at 850.604 kb on + strand, within LRK53_RS03600 at 850.604 kb on + strand, within LRK53_RS03600 at 850.605 kb on - strand, within LRK53_RS03600 at 850.834 kb on + strand, within LRK53_RS03600 at 850.834 kb on + strand, within LRK53_RS03600 at 850.834 kb on + strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.853 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.084 kb on + strand at 851.084 kb on + strand at 851.084 kb on + strand at 851.085 kb on - strand at 851.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 848,549 + -0.4 848,549 + -0.7 848,550 - -0.8 848,550 - +0.2 848,639 + +0.2 848,639 + -1.5 848,640 - -0.6 848,640 - -1.9 848,646 + -0.5 848,654 - -1.5 848,654 - -2.0 848,738 + -0.8 848,739 - -0.0 848,739 - -1.7 848,745 + -2.4 848,752 + +0.0 848,753 - -1.4 848,753 - +0.2 848,779 + +2.5 848,779 + -0.5 848,779 + -0.3 848,779 + -0.5 848,780 - -0.4 848,780 - -0.6 848,780 - -0.5 848,780 - -0.5 848,785 + -0.0 848,785 + -0.2 848,785 + -0.3 848,785 + -0.3 848,785 + -0.7 848,785 + -1.8 848,785 + +0.0 848,785 + +0.8 848,785 + +0.2 848,785 + +0.1 848,785 + -0.3 848,786 - +0.2 848,786 - -2.5 848,786 - -0.7 848,786 - -1.0 848,786 - +1.9 848,786 - -1.4 848,786 - -1.0 848,786 - +1.0 848,786 - +0.4 848,786 - -1.0 848,786 - -0.3 848,786 - -0.8 848,786 - -1.2 848,786 - +1.0 848,789 - -1.4 848,789 - -0.5 848,836 + LRK53_RS03590 0.11 -1.9 848,836 + LRK53_RS03590 0.11 -0.5 848,836 + LRK53_RS03590 0.11 -0.7 848,836 + LRK53_RS03590 0.11 -1.3 848,842 + LRK53_RS03590 0.12 -0.4 848,842 + LRK53_RS03590 0.12 -2.2 848,842 + LRK53_RS03590 0.12 -1.8 848,842 + LRK53_RS03590 0.12 -0.5 848,842 + LRK53_RS03590 0.12 -0.1 848,842 + LRK53_RS03590 0.12 -1.9 848,842 + LRK53_RS03590 0.12 +0.2 848,842 + LRK53_RS03590 0.12 -1.4 848,842 + LRK53_RS03590 0.12 -0.5 848,842 + LRK53_RS03590 0.12 +0.3 848,842 + LRK53_RS03590 0.12 +0.5 848,843 - LRK53_RS03590 0.12 +2.2 848,843 - LRK53_RS03590 0.12 +0.2 849,110 - LRK53_RS03590 0.54 +0.3 849,110 - LRK53_RS03590 0.54 -1.4 849,301 + LRK53_RS03590 0.84 +0.2 849,301 + LRK53_RS03590 0.84 -2.5 849,301 + LRK53_RS03590 0.84 -0.8 849,301 + LRK53_RS03590 0.84 -1.8 849,301 + LRK53_RS03590 0.84 +0.3 849,301 + LRK53_RS03590 0.84 +1.2 849,301 + LRK53_RS03590 0.84 -0.4 849,301 + LRK53_RS03590 0.84 -0.8 849,301 + LRK53_RS03590 0.84 -1.4 850,451 + LRK53_RS03600 0.25 -2.1 850,451 + LRK53_RS03600 0.25 -0.5 850,451 + LRK53_RS03600 0.25 -2.3 850,451 + LRK53_RS03600 0.25 -2.1 850,451 + LRK53_RS03600 0.25 -0.3 850,451 + LRK53_RS03600 0.25 -1.6 850,451 + LRK53_RS03600 0.25 -0.4 850,451 + LRK53_RS03600 0.25 -2.5 850,451 + LRK53_RS03600 0.25 +0.0 850,451 + LRK53_RS03600 0.25 -1.5 850,451 + LRK53_RS03600 0.25 +1.0 850,451 + LRK53_RS03600 0.25 +0.6 850,451 + LRK53_RS03600 0.25 -1.4 850,451 + LRK53_RS03600 0.25 -1.1 850,451 + LRK53_RS03600 0.25 -0.7 850,451 + LRK53_RS03600 0.25 -1.2 850,451 + LRK53_RS03600 0.25 -1.2 850,451 + LRK53_RS03600 0.25 -1.1 850,452 - LRK53_RS03600 0.25 -2.0 850,452 - LRK53_RS03600 0.25 -1.4 850,452 - LRK53_RS03600 0.25 -1.0 850,452 - LRK53_RS03600 0.25 -0.8 850,452 - LRK53_RS03600 0.25 +0.7 850,452 - LRK53_RS03600 0.25 -1.2 850,452 - LRK53_RS03600 0.25 +1.3 850,452 - LRK53_RS03600 0.25 -0.5 850,452 - LRK53_RS03600 0.25 -1.5 850,452 - LRK53_RS03600 0.25 +0.3 850,452 - LRK53_RS03600 0.25 +0.3 850,452 - LRK53_RS03600 0.25 -2.4 850,452 - LRK53_RS03600 0.25 -1.0 850,452 - LRK53_RS03600 0.25 -1.4 850,452 - LRK53_RS03600 0.25 -0.5 850,452 - LRK53_RS03600 0.25 -1.0 850,452 - LRK53_RS03600 0.25 -0.8 850,556 + LRK53_RS03600 0.43 -0.8 850,556 + LRK53_RS03600 0.43 +0.2 850,557 - LRK53_RS03600 0.43 +0.0 850,557 - LRK53_RS03600 0.43 +1.5 850,557 - LRK53_RS03600 0.43 -0.7 850,604 + LRK53_RS03600 0.51 -0.4 850,604 + LRK53_RS03600 0.51 -0.3 850,605 - LRK53_RS03600 0.51 -1.0 850,834 + LRK53_RS03600 0.89 -2.2 850,834 + LRK53_RS03600 0.89 +0.0 850,834 + LRK53_RS03600 0.89 +0.8 850,835 - LRK53_RS03600 0.89 -1.3 850,835 - LRK53_RS03600 0.89 +0.0 850,835 - LRK53_RS03600 0.89 +0.5 850,835 - LRK53_RS03600 0.89 -1.2 850,835 - LRK53_RS03600 0.89 +0.7 850,835 - LRK53_RS03600 0.89 -3.1 850,835 - LRK53_RS03600 0.89 -0.4 850,853 + -0.4 851,057 + -1.4 851,057 + -1.5 851,057 + +0.7 851,057 + +0.0 851,057 + -0.9 851,057 + +1.0 851,057 + -1.0 851,058 - -1.6 851,058 - -1.2 851,058 - +0.3 851,058 - -0.2 851,058 - -3.1 851,058 - -0.9 851,058 - -0.1 851,058 - -0.2 851,062 + +0.3 851,062 + +0.2 851,062 + -1.5 851,062 + -1.1 851,062 + -2.2 851,062 + -1.5 851,062 + -0.5 851,062 + +0.5 851,062 + +0.6 851,062 + -1.6 851,062 + -2.8 851,062 + -0.2 851,062 + +0.0 851,062 + -1.4 851,062 + -2.0 851,062 + +0.5 851,062 + -1.4 851,062 + +0.9 851,063 - -0.9 851,063 - -3.1 851,063 - +1.9 851,063 - -1.8 851,063 - -1.2 851,063 - +1.6 851,063 - +0.6 851,063 - -3.0 851,063 - -1.0 851,063 - -0.2 851,063 - -0.4 851,084 + -0.5 851,084 + -1.4 851,084 + +0.1 851,085 - +0.0 851,103 - +0.5
Or see this region's nucleotide sequence