Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03540 and LRK53_RS03545 are separated by 7 nucleotides LRK53_RS03545 and LRK53_RS03550 are separated by 323 nucleotides LRK53_RS03550 and LRK53_RS03555 are separated by 118 nucleotides
LRK53_RS03540: LRK53_RS03540 - FmdE family protein, at 835,666 to 836,280
_RS03540
LRK53_RS03545: LRK53_RS03545 - DUF2249 domain-containing protein, at 836,288 to 836,554
_RS03545
LRK53_RS03550: LRK53_RS03550 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 836,878 to 837,645
_RS03550
LRK53_RS03555: LRK53_RS03555 - amidohydrolase family protein, at 837,764 to 839,119
_RS03555
Position (kb) 836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 835.919 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.049 kb on + strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.050 kb on - strand, within LRK53_RS03540 at 836.091 kb on - strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.177 kb on + strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.178 kb on - strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.183 kb on + strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.184 kb on - strand, within LRK53_RS03540 at 836.261 kb on + strand at 836.261 kb on + strand at 836.262 kb on - strand at 836.273 kb on + strand at 836.273 kb on + strand at 836.273 kb on + strand at 836.274 kb on - strand at 836.274 kb on - strand at 836.274 kb on - strand at 836.274 kb on - strand at 836.352 kb on + strand, within LRK53_RS03545 at 836.352 kb on + strand, within LRK53_RS03545 at 836.353 kb on - strand, within LRK53_RS03545 at 836.353 kb on - strand, within LRK53_RS03545 at 836.571 kb on + strand at 836.571 kb on + strand at 836.571 kb on + strand at 836.571 kb on + strand at 836.572 kb on - strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.588 kb on + strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.589 kb on - strand at 836.888 kb on + strand at 836.888 kb on + strand at 836.888 kb on + strand at 836.888 kb on + strand at 837.657 kb on + strand at 837.658 kb on - strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.760 kb on + strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.761 kb on - strand at 837.795 kb on + strand at 837.795 kb on + strand at 837.795 kb on + strand at 837.796 kb on - strand at 837.796 kb on - strand at 837.796 kb on - strand at 837.996 kb on + strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 837.997 kb on - strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.074 kb on + strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.075 kb on - strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.173 kb on + strand, within LRK53_RS03555 at 838.174 kb on - strand, within LRK53_RS03555 at 838.174 kb on - strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.200 kb on + strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.201 kb on - strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.464 kb on + strand, within LRK53_RS03555 at 838.465 kb on - strand, within LRK53_RS03555 at 838.465 kb on - strand, within LRK53_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 835,919 + LRK53_RS03540 0.41 -0.7 836,049 + LRK53_RS03540 0.62 -0.1 836,049 + LRK53_RS03540 0.62 +0.2 836,049 + LRK53_RS03540 0.62 +0.0 836,049 + LRK53_RS03540 0.62 -0.8 836,049 + LRK53_RS03540 0.62 -1.4 836,049 + LRK53_RS03540 0.62 -1.2 836,049 + LRK53_RS03540 0.62 +0.2 836,049 + LRK53_RS03540 0.62 -1.9 836,049 + LRK53_RS03540 0.62 +0.5 836,049 + LRK53_RS03540 0.62 -1.4 836,049 + LRK53_RS03540 0.62 -1.0 836,049 + LRK53_RS03540 0.62 -1.0 836,049 + LRK53_RS03540 0.62 -1.4 836,049 + LRK53_RS03540 0.62 +0.0 836,049 + LRK53_RS03540 0.62 +1.6 836,049 + LRK53_RS03540 0.62 -1.0 836,049 + LRK53_RS03540 0.62 -0.5 836,049 + LRK53_RS03540 0.62 +0.0 836,050 - LRK53_RS03540 0.62 -2.5 836,050 - LRK53_RS03540 0.62 -0.4 836,050 - LRK53_RS03540 0.62 -2.8 836,050 - LRK53_RS03540 0.62 -0.1 836,050 - LRK53_RS03540 0.62 -0.2 836,050 - LRK53_RS03540 0.62 +1.1 836,050 - LRK53_RS03540 0.62 -1.7 836,050 - LRK53_RS03540 0.62 +0.0 836,050 - LRK53_RS03540 0.62 -0.1 836,050 - LRK53_RS03540 0.62 -1.4 836,050 - LRK53_RS03540 0.62 -0.3 836,050 - LRK53_RS03540 0.62 -1.2 836,050 - LRK53_RS03540 0.62 -1.0 836,050 - LRK53_RS03540 0.62 +0.0 836,050 - LRK53_RS03540 0.62 -1.7 836,050 - LRK53_RS03540 0.62 -1.4 836,050 - LRK53_RS03540 0.62 -2.9 836,050 - LRK53_RS03540 0.62 -1.8 836,050 - LRK53_RS03540 0.62 -1.9 836,091 - LRK53_RS03540 0.69 -2.0 836,177 + LRK53_RS03540 0.83 -1.3 836,177 + LRK53_RS03540 0.83 -1.0 836,177 + LRK53_RS03540 0.83 -0.7 836,177 + LRK53_RS03540 0.83 +0.5 836,177 + LRK53_RS03540 0.83 -1.1 836,177 + LRK53_RS03540 0.83 -1.1 836,177 + LRK53_RS03540 0.83 -1.7 836,177 + LRK53_RS03540 0.83 -1.3 836,177 + LRK53_RS03540 0.83 +2.3 836,177 + LRK53_RS03540 0.83 -1.2 836,177 + LRK53_RS03540 0.83 -1.7 836,177 + LRK53_RS03540 0.83 -0.7 836,177 + LRK53_RS03540 0.83 -0.1 836,177 + LRK53_RS03540 0.83 -2.8 836,178 - LRK53_RS03540 0.83 -0.7 836,178 - LRK53_RS03540 0.83 -2.6 836,178 - LRK53_RS03540 0.83 -1.0 836,178 - LRK53_RS03540 0.83 -1.2 836,178 - LRK53_RS03540 0.83 -0.8 836,178 - LRK53_RS03540 0.83 -0.2 836,178 - LRK53_RS03540 0.83 +0.7 836,178 - LRK53_RS03540 0.83 -0.4 836,178 - LRK53_RS03540 0.83 -0.5 836,178 - LRK53_RS03540 0.83 -0.4 836,178 - LRK53_RS03540 0.83 +1.1 836,178 - LRK53_RS03540 0.83 -0.8 836,178 - LRK53_RS03540 0.83 -0.4 836,178 - LRK53_RS03540 0.83 +1.2 836,178 - LRK53_RS03540 0.83 -0.5 836,183 + LRK53_RS03540 0.84 +0.6 836,183 + LRK53_RS03540 0.84 -1.1 836,183 + LRK53_RS03540 0.84 -0.5 836,183 + LRK53_RS03540 0.84 +0.7 836,183 + LRK53_RS03540 0.84 -2.6 836,183 + LRK53_RS03540 0.84 -0.2 836,183 + LRK53_RS03540 0.84 -1.8 836,183 + LRK53_RS03540 0.84 +0.2 836,183 + LRK53_RS03540 0.84 +0.2 836,183 + LRK53_RS03540 0.84 -1.0 836,183 + LRK53_RS03540 0.84 -1.2 836,183 + LRK53_RS03540 0.84 -0.5 836,183 + LRK53_RS03540 0.84 +0.8 836,184 - LRK53_RS03540 0.84 +0.9 836,184 - LRK53_RS03540 0.84 -0.5 836,184 - LRK53_RS03540 0.84 -1.4 836,184 - LRK53_RS03540 0.84 -1.8 836,184 - LRK53_RS03540 0.84 +1.0 836,184 - LRK53_RS03540 0.84 +1.1 836,184 - LRK53_RS03540 0.84 -0.2 836,184 - LRK53_RS03540 0.84 -1.2 836,184 - LRK53_RS03540 0.84 -2.5 836,184 - LRK53_RS03540 0.84 -1.1 836,261 + -1.0 836,261 + -0.5 836,262 - -1.5 836,273 + -3.2 836,273 + +4.6 836,273 + -1.7 836,274 - -1.4 836,274 - -0.8 836,274 - -2.1 836,274 - -0.8 836,352 + LRK53_RS03545 0.24 +0.9 836,352 + LRK53_RS03545 0.24 -1.4 836,353 - LRK53_RS03545 0.24 +0.0 836,353 - LRK53_RS03545 0.24 -1.5 836,571 + +0.0 836,571 + +1.9 836,571 + -1.2 836,571 + +1.0 836,572 - -2.4 836,588 + -1.4 836,588 + -0.9 836,588 + -0.9 836,588 + -1.4 836,588 + -0.9 836,588 + +0.2 836,588 + +0.1 836,588 + -2.5 836,588 + +0.4 836,588 + -3.4 836,588 + -1.9 836,589 - -0.5 836,589 - -0.2 836,589 - -0.1 836,589 - -0.9 836,589 - +0.5 836,589 - -0.0 836,589 - -0.9 836,589 - -1.3 836,888 + +0.7 836,888 + -0.5 836,888 + -0.8 836,888 + -0.4 837,657 + +0.9 837,658 - -1.0 837,760 + -3.2 837,760 + -0.9 837,760 + +1.0 837,760 + -2.4 837,760 + -0.9 837,760 + -1.3 837,760 + -0.3 837,760 + +0.6 837,760 + -0.9 837,760 + -1.0 837,760 + -1.1 837,761 - -0.6 837,761 - -2.0 837,761 - -0.0 837,761 - +1.8 837,761 - +0.7 837,761 - -1.8 837,761 - +0.0 837,761 - +1.1 837,795 + +1.3 837,795 + -1.3 837,795 + -0.7 837,796 - -1.1 837,796 - +0.6 837,796 - +0.0 837,996 + LRK53_RS03555 0.17 -0.7 837,997 - LRK53_RS03555 0.17 -0.3 837,997 - LRK53_RS03555 0.17 +1.6 837,997 - LRK53_RS03555 0.17 -1.4 837,997 - LRK53_RS03555 0.17 -1.1 837,997 - LRK53_RS03555 0.17 -1.5 837,997 - LRK53_RS03555 0.17 -1.5 837,997 - LRK53_RS03555 0.17 -1.4 838,074 + LRK53_RS03555 0.23 -2.4 838,074 + LRK53_RS03555 0.23 -0.2 838,074 + LRK53_RS03555 0.23 -1.3 838,074 + LRK53_RS03555 0.23 -0.3 838,074 + LRK53_RS03555 0.23 +0.0 838,074 + LRK53_RS03555 0.23 +1.6 838,074 + LRK53_RS03555 0.23 -1.2 838,074 + LRK53_RS03555 0.23 -0.3 838,074 + LRK53_RS03555 0.23 -1.2 838,074 + LRK53_RS03555 0.23 -0.5 838,075 - LRK53_RS03555 0.23 +0.9 838,075 - LRK53_RS03555 0.23 -1.2 838,075 - LRK53_RS03555 0.23 -1.3 838,075 - LRK53_RS03555 0.23 -1.0 838,075 - LRK53_RS03555 0.23 -1.3 838,075 - LRK53_RS03555 0.23 -0.3 838,075 - LRK53_RS03555 0.23 -0.4 838,075 - LRK53_RS03555 0.23 -0.6 838,173 + LRK53_RS03555 0.30 -0.1 838,173 + LRK53_RS03555 0.30 -1.8 838,173 + LRK53_RS03555 0.30 -1.8 838,173 + LRK53_RS03555 0.30 -1.3 838,174 - LRK53_RS03555 0.30 +0.1 838,174 - LRK53_RS03555 0.30 -1.4 838,200 + LRK53_RS03555 0.32 -2.2 838,200 + LRK53_RS03555 0.32 -0.4 838,200 + LRK53_RS03555 0.32 -1.4 838,200 + LRK53_RS03555 0.32 -1.2 838,200 + LRK53_RS03555 0.32 -0.0 838,200 + LRK53_RS03555 0.32 -1.9 838,200 + LRK53_RS03555 0.32 -0.4 838,200 + LRK53_RS03555 0.32 +0.3 838,200 + LRK53_RS03555 0.32 -0.8 838,201 - LRK53_RS03555 0.32 -0.1 838,201 - LRK53_RS03555 0.32 -0.8 838,201 - LRK53_RS03555 0.32 -0.1 838,201 - LRK53_RS03555 0.32 +0.5 838,201 - LRK53_RS03555 0.32 -1.1 838,201 - LRK53_RS03555 0.32 +0.2 838,201 - LRK53_RS03555 0.32 -0.2 838,201 - LRK53_RS03555 0.32 -2.0 838,201 - LRK53_RS03555 0.32 +0.8 838,201 - LRK53_RS03555 0.32 -0.8 838,201 - LRK53_RS03555 0.32 +0.1 838,464 + LRK53_RS03555 0.52 -0.9 838,464 + LRK53_RS03555 0.52 -1.1 838,464 + LRK53_RS03555 0.52 -1.1 838,464 + LRK53_RS03555 0.52 +2.0 838,464 + LRK53_RS03555 0.52 -2.0 838,464 + LRK53_RS03555 0.52 -0.4 838,464 + LRK53_RS03555 0.52 -0.4 838,464 + LRK53_RS03555 0.52 +2.5 838,464 + LRK53_RS03555 0.52 -0.9 838,465 - LRK53_RS03555 0.52 -0.1 838,465 - LRK53_RS03555 0.52 -1.4
Or see this region's nucleotide sequence