Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03525 and LRK53_RS03530 are separated by 26 nucleotides LRK53_RS03530 and LRK53_RS03535 are separated by 140 nucleotides
LRK53_RS03525: LRK53_RS03525 - acid phosphatase, at 832,155 to 833,849
_RS03525
LRK53_RS03530: LRK53_RS03530 - Lrp/AsnC family transcriptional regulator, at 833,876 to 834,370
_RS03530
LRK53_RS03535: LRK53_RS03535 - DMT family transporter, at 834,511 to 835,443
_RS03535
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 833.107 kb on + strand, within LRK53_RS03525 at 833.108 kb on - strand, within LRK53_RS03525 at 833.110 kb on + strand, within LRK53_RS03525 at 833.110 kb on + strand, within LRK53_RS03525 at 833.111 kb on - strand, within LRK53_RS03525 at 833.111 kb on - strand, within LRK53_RS03525 at 833.111 kb on - strand, within LRK53_RS03525 at 833.134 kb on + strand, within LRK53_RS03525 at 833.134 kb on + strand, within LRK53_RS03525 at 833.134 kb on + strand, within LRK53_RS03525 at 833.134 kb on + strand, within LRK53_RS03525 at 833.135 kb on - strand, within LRK53_RS03525 at 833.135 kb on - strand, within LRK53_RS03525 at 833.135 kb on - strand, within LRK53_RS03525 at 833.135 kb on - strand, within LRK53_RS03525 at 833.135 kb on - strand, within LRK53_RS03525 at 833.194 kb on + strand, within LRK53_RS03525 at 833.194 kb on + strand, within LRK53_RS03525 at 833.194 kb on + strand, within LRK53_RS03525 at 833.194 kb on + strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.195 kb on - strand, within LRK53_RS03525 at 833.326 kb on + strand, within LRK53_RS03525 at 833.326 kb on + strand, within LRK53_RS03525 at 833.326 kb on + strand, within LRK53_RS03525 at 833.326 kb on + strand, within LRK53_RS03525 at 833.355 kb on + strand, within LRK53_RS03525 at 833.355 kb on + strand, within LRK53_RS03525 at 833.355 kb on + strand, within LRK53_RS03525 at 833.356 kb on - strand, within LRK53_RS03525 at 833.356 kb on - strand, within LRK53_RS03525 at 833.505 kb on - strand, within LRK53_RS03525 at 833.623 kb on + strand, within LRK53_RS03525 at 833.623 kb on + strand, within LRK53_RS03525 at 833.623 kb on + strand, within LRK53_RS03525 at 833.623 kb on + strand, within LRK53_RS03525 at 833.623 kb on + strand, within LRK53_RS03525 at 833.624 kb on - strand, within LRK53_RS03525 at 833.624 kb on - strand, within LRK53_RS03525 at 833.624 kb on - strand, within LRK53_RS03525 at 833.624 kb on - strand, within LRK53_RS03525 at 834.294 kb on + strand, within LRK53_RS03530 at 834.295 kb on - strand, within LRK53_RS03530 at 834.350 kb on + strand at 834.350 kb on + strand at 834.350 kb on + strand at 834.351 kb on - strand at 834.351 kb on - strand at 834.351 kb on - strand at 834.425 kb on + strand at 834.449 kb on + strand at 834.449 kb on + strand at 834.450 kb on - strand at 834.450 kb on - strand at 834.450 kb on - strand at 834.474 kb on + strand at 834.474 kb on + strand at 834.474 kb on + strand at 834.474 kb on + strand at 834.474 kb on + strand at 834.474 kb on + strand at 834.475 kb on - strand at 834.475 kb on - strand at 834.475 kb on - strand at 834.516 kb on + strand at 834.587 kb on - strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.601 kb on + strand at 834.602 kb on - strand at 834.602 kb on - strand at 834.602 kb on - strand at 834.760 kb on + strand, within LRK53_RS03535 at 834.760 kb on + strand, within LRK53_RS03535 at 834.760 kb on + strand, within LRK53_RS03535 at 834.760 kb on + strand, within LRK53_RS03535 at 834.761 kb on - strand, within LRK53_RS03535 at 834.761 kb on - strand, within LRK53_RS03535 at 834.778 kb on + strand, within LRK53_RS03535 at 834.779 kb on - strand, within LRK53_RS03535 at 834.779 kb on - strand, within LRK53_RS03535 at 834.779 kb on - strand, within LRK53_RS03535 at 834.779 kb on - strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.258 kb on + strand, within LRK53_RS03535 at 835.259 kb on - strand, within LRK53_RS03535 at 835.259 kb on - strand, within LRK53_RS03535 at 835.259 kb on - strand, within LRK53_RS03535
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 833,107 + LRK53_RS03525 0.56 -0.5 833,108 - LRK53_RS03525 0.56 +0.0 833,110 + LRK53_RS03525 0.56 -1.1 833,110 + LRK53_RS03525 0.56 -1.9 833,111 - LRK53_RS03525 0.56 -0.1 833,111 - LRK53_RS03525 0.56 -1.3 833,111 - LRK53_RS03525 0.56 -2.1 833,134 + LRK53_RS03525 0.58 -0.5 833,134 + LRK53_RS03525 0.58 -0.4 833,134 + LRK53_RS03525 0.58 -1.6 833,134 + LRK53_RS03525 0.58 -0.7 833,135 - LRK53_RS03525 0.58 +0.2 833,135 - LRK53_RS03525 0.58 -0.6 833,135 - LRK53_RS03525 0.58 +1.8 833,135 - LRK53_RS03525 0.58 -2.4 833,135 - LRK53_RS03525 0.58 -3.4 833,194 + LRK53_RS03525 0.61 -1.5 833,194 + LRK53_RS03525 0.61 +0.9 833,194 + LRK53_RS03525 0.61 -2.4 833,194 + LRK53_RS03525 0.61 -1.5 833,195 - LRK53_RS03525 0.61 -1.6 833,195 - LRK53_RS03525 0.61 -1.6 833,195 - LRK53_RS03525 0.61 -1.5 833,195 - LRK53_RS03525 0.61 +0.5 833,195 - LRK53_RS03525 0.61 +0.0 833,195 - LRK53_RS03525 0.61 +0.7 833,195 - LRK53_RS03525 0.61 -1.1 833,195 - LRK53_RS03525 0.61 -1.8 833,195 - LRK53_RS03525 0.61 -0.1 833,326 + LRK53_RS03525 0.69 -0.1 833,326 + LRK53_RS03525 0.69 +0.8 833,326 + LRK53_RS03525 0.69 -0.5 833,326 + LRK53_RS03525 0.69 -0.3 833,355 + LRK53_RS03525 0.71 -1.1 833,355 + LRK53_RS03525 0.71 +0.0 833,355 + LRK53_RS03525 0.71 -0.4 833,356 - LRK53_RS03525 0.71 -1.1 833,356 - LRK53_RS03525 0.71 -1.5 833,505 - LRK53_RS03525 0.80 +1.6 833,623 + LRK53_RS03525 0.87 -0.9 833,623 + LRK53_RS03525 0.87 -0.6 833,623 + LRK53_RS03525 0.87 -0.1 833,623 + LRK53_RS03525 0.87 -0.9 833,623 + LRK53_RS03525 0.87 -0.2 833,624 - LRK53_RS03525 0.87 +0.1 833,624 - LRK53_RS03525 0.87 +0.9 833,624 - LRK53_RS03525 0.87 -1.8 833,624 - LRK53_RS03525 0.87 +0.6 834,294 + LRK53_RS03530 0.84 +3.6 834,295 - LRK53_RS03530 0.85 -0.7 834,350 + +0.0 834,350 + -1.7 834,350 + -1.2 834,351 - -2.0 834,351 - -0.5 834,351 - -1.6 834,425 + -0.9 834,449 + -0.8 834,449 + -0.9 834,450 - -0.6 834,450 - -0.4 834,450 - -0.5 834,474 + +0.4 834,474 + -0.8 834,474 + -0.2 834,474 + -0.3 834,474 + -0.8 834,474 + -1.5 834,475 - +0.0 834,475 - -0.3 834,475 - -1.0 834,516 + -1.3 834,587 - -1.2 834,601 + +0.5 834,601 + +0.2 834,601 + -0.2 834,601 + -0.5 834,601 + -0.9 834,601 + +0.0 834,601 + +2.6 834,601 + -2.5 834,602 - +0.9 834,602 - -0.7 834,602 - -1.9 834,760 + LRK53_RS03535 0.27 -0.1 834,760 + LRK53_RS03535 0.27 -0.1 834,760 + LRK53_RS03535 0.27 -0.5 834,760 + LRK53_RS03535 0.27 -0.8 834,761 - LRK53_RS03535 0.27 -3.0 834,761 - LRK53_RS03535 0.27 +1.0 834,778 + LRK53_RS03535 0.29 -0.3 834,779 - LRK53_RS03535 0.29 -1.4 834,779 - LRK53_RS03535 0.29 -0.4 834,779 - LRK53_RS03535 0.29 -1.2 834,779 - LRK53_RS03535 0.29 -1.5 835,258 + LRK53_RS03535 0.80 -0.9 835,258 + LRK53_RS03535 0.80 -1.0 835,258 + LRK53_RS03535 0.80 +0.2 835,258 + LRK53_RS03535 0.80 -2.0 835,258 + LRK53_RS03535 0.80 -0.1 835,258 + LRK53_RS03535 0.80 -0.8 835,258 + LRK53_RS03535 0.80 -0.4 835,258 + LRK53_RS03535 0.80 -1.0 835,258 + LRK53_RS03535 0.80 +0.6 835,258 + LRK53_RS03535 0.80 -0.4 835,259 - LRK53_RS03535 0.80 -1.9 835,259 - LRK53_RS03535 0.80 +0.3 835,259 - LRK53_RS03535 0.80 -1.5
Or see this region's nucleotide sequence