Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03475 and LRK53_RS03480 are separated by 199 nucleotides LRK53_RS03480 and LRK53_RS03485 are separated by 115 nucleotides LRK53_RS03485 and LRK53_RS03490 are separated by 18 nucleotides
LRK53_RS03475: LRK53_RS03475 - aspartate/tyrosine/aromatic aminotransferase, at 819,941 to 821,119
_RS03475
LRK53_RS03480: LRK53_RS03480 - recombination-associated protein RdgC, at 821,319 to 822,236
_RS03480
LRK53_RS03485: LRK53_RS03485 - M48 family metallopeptidase, at 822,352 to 823,122
_RS03485
LRK53_RS03490: LRK53_RS03490 - sterol desaturase family protein, at 823,141 to 823,728
_RS03490
Position (kb) 821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 820.370 kb on + strand, within LRK53_RS03475 at 820.370 kb on + strand, within LRK53_RS03475 at 820.370 kb on + strand, within LRK53_RS03475 at 820.370 kb on + strand, within LRK53_RS03475 at 820.373 kb on + strand, within LRK53_RS03475 at 820.373 kb on + strand, within LRK53_RS03475 at 820.374 kb on - strand, within LRK53_RS03475 at 820.565 kb on + strand, within LRK53_RS03475 at 820.565 kb on + strand, within LRK53_RS03475 at 820.565 kb on + strand, within LRK53_RS03475 at 820.566 kb on - strand, within LRK53_RS03475 at 820.566 kb on - strand, within LRK53_RS03475 at 820.658 kb on + strand, within LRK53_RS03475 at 820.658 kb on + strand, within LRK53_RS03475 at 820.658 kb on + strand, within LRK53_RS03475 at 820.658 kb on + strand, within LRK53_RS03475 at 820.659 kb on - strand, within LRK53_RS03475 at 820.659 kb on - strand, within LRK53_RS03475 at 820.659 kb on - strand, within LRK53_RS03475 at 820.679 kb on + strand, within LRK53_RS03475 at 820.679 kb on + strand, within LRK53_RS03475 at 820.679 kb on + strand, within LRK53_RS03475 at 820.679 kb on + strand, within LRK53_RS03475 at 820.679 kb on + strand, within LRK53_RS03475 at 820.680 kb on - strand, within LRK53_RS03475 at 820.680 kb on - strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.775 kb on + strand, within LRK53_RS03475 at 820.776 kb on - strand, within LRK53_RS03475 at 820.776 kb on - strand, within LRK53_RS03475 at 820.776 kb on - strand, within LRK53_RS03475 at 820.973 kb on + strand, within LRK53_RS03475 at 821.027 kb on + strand at 821.027 kb on + strand at 821.027 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.120 kb on + strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.121 kb on - strand at 821.220 kb on + strand at 821.220 kb on + strand at 821.220 kb on + strand at 821.221 kb on - strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.274 kb on + strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.275 kb on - strand at 822.487 kb on + strand, within LRK53_RS03485 at 822.487 kb on + strand, within LRK53_RS03485 at 822.487 kb on + strand, within LRK53_RS03485 at 822.487 kb on + strand, within LRK53_RS03485 at 822.487 kb on + strand, within LRK53_RS03485 at 822.488 kb on - strand, within LRK53_RS03485 at 822.488 kb on - strand, within LRK53_RS03485 at 822.488 kb on - strand, within LRK53_RS03485 at 822.488 kb on - strand, within LRK53_RS03485 at 822.495 kb on - strand, within LRK53_RS03485 at 822.814 kb on + strand, within LRK53_RS03485 at 822.814 kb on + strand, within LRK53_RS03485 at 822.815 kb on - strand, within LRK53_RS03485 at 822.815 kb on - strand, within LRK53_RS03485 at 822.815 kb on - strand, within LRK53_RS03485 at 822.949 kb on + strand, within LRK53_RS03485 at 822.949 kb on + strand, within LRK53_RS03485 at 822.950 kb on - strand, within LRK53_RS03485 at 822.950 kb on - strand, within LRK53_RS03485 at 822.950 kb on - strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.983 kb on + strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 822.984 kb on - strand, within LRK53_RS03485 at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.166 kb on + strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.167 kb on - strand at 823.229 kb on + strand, within LRK53_RS03490 at 823.229 kb on + strand, within LRK53_RS03490 at 823.230 kb on - strand, within LRK53_RS03490 at 823.230 kb on - strand, within LRK53_RS03490 at 823.230 kb on - strand, within LRK53_RS03490 at 823.230 kb on - strand, within LRK53_RS03490
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 820,370 + LRK53_RS03475 0.36 -2.1 820,370 + LRK53_RS03475 0.36 -0.3 820,370 + LRK53_RS03475 0.36 -2.0 820,370 + LRK53_RS03475 0.36 -0.7 820,373 + LRK53_RS03475 0.37 -0.3 820,373 + LRK53_RS03475 0.37 -0.7 820,374 - LRK53_RS03475 0.37 -1.1 820,565 + LRK53_RS03475 0.53 +0.0 820,565 + LRK53_RS03475 0.53 -0.1 820,565 + LRK53_RS03475 0.53 +0.0 820,566 - LRK53_RS03475 0.53 -0.4 820,566 - LRK53_RS03475 0.53 -1.1 820,658 + LRK53_RS03475 0.61 -0.0 820,658 + LRK53_RS03475 0.61 -2.3 820,658 + LRK53_RS03475 0.61 -0.4 820,658 + LRK53_RS03475 0.61 +0.5 820,659 - LRK53_RS03475 0.61 -2.0 820,659 - LRK53_RS03475 0.61 -0.5 820,659 - LRK53_RS03475 0.61 -2.2 820,679 + LRK53_RS03475 0.63 -1.0 820,679 + LRK53_RS03475 0.63 +0.1 820,679 + LRK53_RS03475 0.63 -2.0 820,679 + LRK53_RS03475 0.63 -0.8 820,679 + LRK53_RS03475 0.63 -0.2 820,680 - LRK53_RS03475 0.63 -1.3 820,680 - LRK53_RS03475 0.63 -0.9 820,775 + LRK53_RS03475 0.71 -1.9 820,775 + LRK53_RS03475 0.71 -1.8 820,775 + LRK53_RS03475 0.71 -1.0 820,775 + LRK53_RS03475 0.71 -2.7 820,775 + LRK53_RS03475 0.71 +0.0 820,775 + LRK53_RS03475 0.71 +1.5 820,775 + LRK53_RS03475 0.71 -2.8 820,775 + LRK53_RS03475 0.71 -1.3 820,775 + LRK53_RS03475 0.71 -1.8 820,776 - LRK53_RS03475 0.71 +0.2 820,776 - LRK53_RS03475 0.71 -0.9 820,776 - LRK53_RS03475 0.71 +0.2 820,973 + LRK53_RS03475 0.88 -2.2 821,027 + -1.9 821,027 + -0.6 821,027 + -0.3 821,120 + -1.8 821,120 + +2.5 821,120 + -0.8 821,120 + -1.4 821,120 + -0.9 821,120 + -1.5 821,120 + -3.4 821,120 + -1.3 821,120 + -2.7 821,121 - -1.8 821,121 - -0.3 821,121 - -0.1 821,121 - -0.5 821,121 - -1.9 821,121 - +0.3 821,121 - -1.0 821,121 - -0.3 821,121 - -0.2 821,121 - -0.8 821,220 + -0.5 821,220 + +1.3 821,220 + -0.8 821,221 - +1.2 822,274 + -0.4 822,274 + -0.8 822,274 + -1.1 822,274 + -0.2 822,274 + +0.7 822,274 + -1.3 822,274 + -2.3 822,274 + -2.4 822,274 + -0.7 822,274 + +1.5 822,274 + -1.7 822,274 + -2.3 822,274 + +1.0 822,274 + +0.9 822,274 + -2.5 822,275 - -2.2 822,275 - -1.2 822,275 - -0.5 822,275 - -0.1 822,275 - +1.0 822,275 - -0.5 822,275 - -1.5 822,275 - -1.2 822,487 + LRK53_RS03485 0.18 -0.3 822,487 + LRK53_RS03485 0.18 -1.2 822,487 + LRK53_RS03485 0.18 -0.1 822,487 + LRK53_RS03485 0.18 -0.3 822,487 + LRK53_RS03485 0.18 -2.2 822,488 - LRK53_RS03485 0.18 -1.1 822,488 - LRK53_RS03485 0.18 +0.1 822,488 - LRK53_RS03485 0.18 -0.4 822,488 - LRK53_RS03485 0.18 -0.3 822,495 - LRK53_RS03485 0.19 +0.7 822,814 + LRK53_RS03485 0.60 -2.0 822,814 + LRK53_RS03485 0.60 -2.0 822,815 - LRK53_RS03485 0.60 -0.3 822,815 - LRK53_RS03485 0.60 +0.0 822,815 - LRK53_RS03485 0.60 +0.9 822,949 + LRK53_RS03485 0.77 -0.3 822,949 + LRK53_RS03485 0.77 -1.5 822,950 - LRK53_RS03485 0.78 +0.5 822,950 - LRK53_RS03485 0.78 +1.6 822,950 - LRK53_RS03485 0.78 -2.7 822,983 + LRK53_RS03485 0.82 -1.3 822,983 + LRK53_RS03485 0.82 +0.0 822,983 + LRK53_RS03485 0.82 +0.3 822,983 + LRK53_RS03485 0.82 +0.1 822,983 + LRK53_RS03485 0.82 -0.4 822,983 + LRK53_RS03485 0.82 +0.5 822,983 + LRK53_RS03485 0.82 -1.1 822,983 + LRK53_RS03485 0.82 -2.1 822,984 - LRK53_RS03485 0.82 -2.2 822,984 - LRK53_RS03485 0.82 +0.6 822,984 - LRK53_RS03485 0.82 -0.7 822,984 - LRK53_RS03485 0.82 -1.5 822,984 - LRK53_RS03485 0.82 +0.2 822,984 - LRK53_RS03485 0.82 -2.3 822,984 - LRK53_RS03485 0.82 +0.8 823,166 + +0.0 823,166 + -0.1 823,166 + +0.1 823,166 + -1.5 823,166 + -0.5 823,166 + -0.2 823,166 + -0.3 823,166 + -2.0 823,166 + -0.4 823,166 + +1.9 823,166 + +0.9 823,166 + -2.2 823,166 + +0.0 823,167 - +0.5 823,167 - -0.9 823,167 - -1.1 823,167 - -1.1 823,167 - -1.2 823,167 - -0.9 823,167 - -1.0 823,167 - -0.5 823,167 - -1.4 823,167 - -1.7 823,167 - +0.2 823,229 + LRK53_RS03490 0.15 +0.7 823,229 + LRK53_RS03490 0.15 -1.0 823,230 - LRK53_RS03490 0.15 -0.4 823,230 - LRK53_RS03490 0.15 -2.8 823,230 - LRK53_RS03490 0.15 -3.3 823,230 - LRK53_RS03490 0.15 -1.2
Or see this region's nucleotide sequence