Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03425 and LRK53_RS03430 are separated by 142 nucleotides LRK53_RS03430 and LRK53_RS03435 are separated by 153 nucleotides LRK53_RS03435 and LRK53_RS03440 are separated by 3 nucleotides
LRK53_RS03425: LRK53_RS03425 - insulinase family protein, at 809,147 to 812,008
_RS03425
LRK53_RS03430: LRK53_RS03430 - DUF4156 domain-containing protein, at 812,151 to 812,549
_RS03430
LRK53_RS03435: LRK53_RS03435 - MarR family transcriptional regulator, at 812,703 to 813,197
_RS03435
LRK53_RS03440: LRK53_RS03440 - FUSC family protein, at 813,201 to 815,330
_RS03440
Position (kb) 812
813 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 811.382 kb on + strand, within LRK53_RS03425 at 811.382 kb on + strand, within LRK53_RS03425 at 811.382 kb on + strand, within LRK53_RS03425 at 811.382 kb on + strand, within LRK53_RS03425 at 811.382 kb on + strand, within LRK53_RS03425 at 811.382 kb on + strand, within LRK53_RS03425 at 811.383 kb on - strand, within LRK53_RS03425 at 811.383 kb on - strand, within LRK53_RS03425 at 811.383 kb on - strand, within LRK53_RS03425 at 811.550 kb on + strand, within LRK53_RS03425 at 811.551 kb on - strand, within LRK53_RS03425 at 811.551 kb on - strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.604 kb on + strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.605 kb on - strand, within LRK53_RS03425 at 811.748 kb on + strand at 811.748 kb on + strand at 811.748 kb on + strand at 811.749 kb on - strand at 811.749 kb on - strand at 811.749 kb on - strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.796 kb on + strand at 811.797 kb on - strand at 811.797 kb on - strand at 811.797 kb on - strand at 811.814 kb on + strand at 811.814 kb on + strand at 811.814 kb on + strand at 811.977 kb on + strand at 811.977 kb on + strand at 811.977 kb on + strand at 811.978 kb on - strand at 811.978 kb on - strand at 811.978 kb on - strand at 811.978 kb on - strand at 811.978 kb on - strand at 812.084 kb on + strand at 812.451 kb on + strand, within LRK53_RS03430 at 812.640 kb on + strand at 812.641 kb on - strand at 812.641 kb on - strand at 812.645 kb on + strand at 812.645 kb on + strand at 812.645 kb on + strand at 812.645 kb on + strand at 812.646 kb on - strand at 812.646 kb on - strand at 812.649 kb on + strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.650 kb on - strand at 812.651 kb on + strand at 812.652 kb on - strand at 812.660 kb on + strand at 812.660 kb on + strand at 812.660 kb on + strand at 812.661 kb on - strand at 812.664 kb on + strand at 812.672 kb on + strand at 812.681 kb on + strand at 812.682 kb on - strand at 812.689 kb on - strand at 812.689 kb on - strand at 812.689 kb on - strand at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.808 kb on + strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.809 kb on - strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.871 kb on + strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.872 kb on - strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.892 kb on + strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.893 kb on - strand, within LRK53_RS03435 at 812.907 kb on + strand, within LRK53_RS03435 at 812.908 kb on - strand, within LRK53_RS03435 at 812.908 kb on - strand, within LRK53_RS03435 at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.318 kb on + strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.319 kb on - strand at 813.432 kb on + strand, within LRK53_RS03440 at 813.432 kb on + strand, within LRK53_RS03440 at 813.530 kb on - strand, within LRK53_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 811,382 + LRK53_RS03425 0.78 +1.3 811,382 + LRK53_RS03425 0.78 -0.7 811,382 + LRK53_RS03425 0.78 -1.6 811,382 + LRK53_RS03425 0.78 -0.3 811,382 + LRK53_RS03425 0.78 -0.3 811,382 + LRK53_RS03425 0.78 +0.5 811,383 - LRK53_RS03425 0.78 +0.3 811,383 - LRK53_RS03425 0.78 -2.3 811,383 - LRK53_RS03425 0.78 -0.0 811,550 + LRK53_RS03425 0.84 -1.2 811,551 - LRK53_RS03425 0.84 -1.8 811,551 - LRK53_RS03425 0.84 -0.1 811,604 + LRK53_RS03425 0.86 -0.4 811,604 + LRK53_RS03425 0.86 -0.1 811,604 + LRK53_RS03425 0.86 -2.2 811,604 + LRK53_RS03425 0.86 -1.0 811,604 + LRK53_RS03425 0.86 +0.5 811,604 + LRK53_RS03425 0.86 -0.5 811,604 + LRK53_RS03425 0.86 -0.5 811,604 + LRK53_RS03425 0.86 +0.5 811,604 + LRK53_RS03425 0.86 -1.1 811,604 + LRK53_RS03425 0.86 -2.3 811,604 + LRK53_RS03425 0.86 -1.3 811,604 + LRK53_RS03425 0.86 -1.0 811,604 + LRK53_RS03425 0.86 +1.8 811,604 + LRK53_RS03425 0.86 -1.1 811,604 + LRK53_RS03425 0.86 +1.4 811,605 - LRK53_RS03425 0.86 -0.7 811,605 - LRK53_RS03425 0.86 -1.4 811,605 - LRK53_RS03425 0.86 -1.2 811,605 - LRK53_RS03425 0.86 -0.0 811,605 - LRK53_RS03425 0.86 +0.9 811,605 - LRK53_RS03425 0.86 -0.4 811,605 - LRK53_RS03425 0.86 -0.3 811,748 + +0.5 811,748 + -1.9 811,748 + -1.0 811,749 - -0.8 811,749 - +0.7 811,749 - -1.0 811,796 + -0.5 811,796 + -0.0 811,796 + -0.2 811,796 + +1.3 811,796 + -1.0 811,797 - -1.2 811,797 - -1.7 811,797 - -0.5 811,814 + +0.7 811,814 + +0.7 811,814 + -1.3 811,977 + +0.3 811,977 + -0.3 811,977 + -0.9 811,978 - -1.3 811,978 - -1.6 811,978 - -0.2 811,978 - -1.6 811,978 - -3.8 812,084 + -0.8 812,451 + LRK53_RS03430 0.75 -0.4 812,640 + +0.2 812,641 - -2.6 812,641 - -0.8 812,645 + +0.2 812,645 + -1.3 812,645 + -0.2 812,645 + -0.2 812,646 - -0.7 812,646 - +1.6 812,649 + -0.9 812,650 - -1.9 812,650 - -0.7 812,650 - +1.1 812,650 - +1.3 812,650 - -3.2 812,650 - -2.3 812,650 - +2.4 812,651 + -0.5 812,652 - -1.6 812,660 + -2.3 812,660 + +1.0 812,660 + -0.5 812,661 - +0.4 812,664 + -0.8 812,672 + -0.5 812,681 + +1.6 812,682 - -2.2 812,689 - -0.1 812,689 - +0.7 812,689 - -0.7 812,808 + LRK53_RS03435 0.21 -1.3 812,808 + LRK53_RS03435 0.21 -0.4 812,808 + LRK53_RS03435 0.21 +0.2 812,808 + LRK53_RS03435 0.21 -0.6 812,808 + LRK53_RS03435 0.21 -1.3 812,808 + LRK53_RS03435 0.21 -0.4 812,808 + LRK53_RS03435 0.21 +0.2 812,808 + LRK53_RS03435 0.21 -0.5 812,808 + LRK53_RS03435 0.21 +0.6 812,809 - LRK53_RS03435 0.21 -0.2 812,809 - LRK53_RS03435 0.21 +0.2 812,809 - LRK53_RS03435 0.21 -0.1 812,809 - LRK53_RS03435 0.21 -0.2 812,809 - LRK53_RS03435 0.21 -0.2 812,809 - LRK53_RS03435 0.21 -1.1 812,809 - LRK53_RS03435 0.21 -0.3 812,809 - LRK53_RS03435 0.21 -0.7 812,809 - LRK53_RS03435 0.21 -2.2 812,809 - LRK53_RS03435 0.21 -1.4 812,809 - LRK53_RS03435 0.21 +0.1 812,809 - LRK53_RS03435 0.21 +0.0 812,809 - LRK53_RS03435 0.21 -0.3 812,871 + LRK53_RS03435 0.34 -2.4 812,871 + LRK53_RS03435 0.34 -1.9 812,871 + LRK53_RS03435 0.34 -1.0 812,871 + LRK53_RS03435 0.34 -0.3 812,872 - LRK53_RS03435 0.34 -1.0 812,872 - LRK53_RS03435 0.34 -1.4 812,872 - LRK53_RS03435 0.34 -0.7 812,872 - LRK53_RS03435 0.34 -1.2 812,872 - LRK53_RS03435 0.34 -2.3 812,872 - LRK53_RS03435 0.34 -0.1 812,872 - LRK53_RS03435 0.34 -0.3 812,872 - LRK53_RS03435 0.34 +0.5 812,872 - LRK53_RS03435 0.34 -1.5 812,892 + LRK53_RS03435 0.38 +0.7 812,892 + LRK53_RS03435 0.38 +1.9 812,892 + LRK53_RS03435 0.38 +0.6 812,892 + LRK53_RS03435 0.38 -1.3 812,892 + LRK53_RS03435 0.38 +0.2 812,893 - LRK53_RS03435 0.38 +0.4 812,893 - LRK53_RS03435 0.38 -1.0 812,893 - LRK53_RS03435 0.38 -3.0 812,893 - LRK53_RS03435 0.38 -3.5 812,893 - LRK53_RS03435 0.38 +0.6 812,893 - LRK53_RS03435 0.38 +0.1 812,893 - LRK53_RS03435 0.38 -1.0 812,907 + LRK53_RS03435 0.41 +0.5 812,908 - LRK53_RS03435 0.41 -2.0 812,908 - LRK53_RS03435 0.41 -1.3 813,318 + +0.6 813,318 + +0.3 813,318 + -2.0 813,318 + -0.5 813,318 + -1.8 813,318 + +0.4 813,318 + -0.3 813,318 + +0.0 813,319 - -1.1 813,319 - -0.7 813,319 - +0.6 813,319 - +1.3 813,319 - +0.0 813,432 + LRK53_RS03440 0.11 +0.2 813,432 + LRK53_RS03440 0.11 -1.3 813,530 - LRK53_RS03440 0.15 -1.1
Or see this region's nucleotide sequence