Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03400 and LRK53_RS03405 are separated by 127 nucleotides LRK53_RS03405 and LRK53_RS03410 overlap by 4 nucleotides LRK53_RS03410 and LRK53_RS03415 are separated by 121 nucleotides
LRK53_RS03400: LRK53_RS03400 - pseudouridine synthase, at 804,902 to 805,609
_RS03400
LRK53_RS03405: LRK53_RS03405 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 805,737 to 807,386
_RS03405
LRK53_RS03410: LRK53_RS03410 - SCP2 sterol-binding domain-containing protein, at 807,383 to 808,033
_RS03410
LRK53_RS03415: LRK53_RS03415 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 808,155 to 808,640
_RS03415
Position (kb) 805
806
807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 804.747 kb on + strand at 804.747 kb on + strand at 804.747 kb on + strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.955 kb on - strand at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.353 kb on + strand, within LRK53_RS03400 at 805.353 kb on + strand, within LRK53_RS03400 at 805.354 kb on - strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.726 kb on + strand at 805.809 kb on - strand at 805.809 kb on - strand at 807.455 kb on + strand, within LRK53_RS03410 at 807.455 kb on + strand, within LRK53_RS03410 at 807.455 kb on + strand, within LRK53_RS03410 at 807.455 kb on + strand, within LRK53_RS03410 at 807.456 kb on - strand, within LRK53_RS03410 at 807.456 kb on - strand, within LRK53_RS03410 at 807.456 kb on - strand, within LRK53_RS03410 at 808.044 kb on + strand at 808.044 kb on + strand at 808.045 kb on - strand at 808.045 kb on - strand at 808.045 kb on - strand at 808.086 kb on + strand at 808.087 kb on - strand at 808.087 kb on - strand at 808.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 804,747 + +0.2 804,747 + -0.1 804,747 + -1.0 804,748 - -0.4 804,748 - -0.5 804,748 - -1.2 804,955 - -1.5 805,065 + LRK53_RS03400 0.23 -0.3 805,065 + LRK53_RS03400 0.23 +2.3 805,065 + LRK53_RS03400 0.23 -0.4 805,065 + LRK53_RS03400 0.23 -0.5 805,065 + LRK53_RS03400 0.23 -1.5 805,065 + LRK53_RS03400 0.23 +0.0 805,065 + LRK53_RS03400 0.23 +0.5 805,066 - LRK53_RS03400 0.23 +0.1 805,066 - LRK53_RS03400 0.23 -1.4 805,066 - LRK53_RS03400 0.23 -0.5 805,066 - LRK53_RS03400 0.23 -2.3 805,066 - LRK53_RS03400 0.23 -1.3 805,066 - LRK53_RS03400 0.23 -0.1 805,066 - LRK53_RS03400 0.23 -0.9 805,189 - LRK53_RS03400 0.41 +0.0 805,189 - LRK53_RS03400 0.41 -2.2 805,189 - LRK53_RS03400 0.41 -2.0 805,353 + LRK53_RS03400 0.64 -1.8 805,353 + LRK53_RS03400 0.64 +3.3 805,354 - LRK53_RS03400 0.64 -3.5 805,467 + LRK53_RS03400 0.80 +0.1 805,467 + LRK53_RS03400 0.80 -0.5 805,467 + LRK53_RS03400 0.80 -1.0 805,467 + LRK53_RS03400 0.80 +0.0 805,467 + LRK53_RS03400 0.80 -0.1 805,467 + LRK53_RS03400 0.80 -0.7 805,468 - LRK53_RS03400 0.80 -0.6 805,468 - LRK53_RS03400 0.80 -1.7 805,468 - LRK53_RS03400 0.80 -0.5 805,631 - -0.7 805,631 - -0.1 805,631 - -0.2 805,631 - +0.0 805,631 - -0.7 805,631 - -1.9 805,631 - +0.5 805,631 - -0.1 805,726 + +0.7 805,809 - -1.6 805,809 - -2.2 807,455 + LRK53_RS03410 0.11 -0.7 807,455 + LRK53_RS03410 0.11 -2.8 807,455 + LRK53_RS03410 0.11 +0.0 807,455 + LRK53_RS03410 0.11 -2.6 807,456 - LRK53_RS03410 0.11 -2.7 807,456 - LRK53_RS03410 0.11 -0.1 807,456 - LRK53_RS03410 0.11 -1.7 808,044 + -1.3 808,044 + -2.9 808,045 - -0.1 808,045 - -0.9 808,045 - -1.3 808,086 + -2.3 808,087 - -1.7 808,087 - -1.5 808,156 + -1.0
Or see this region's nucleotide sequence