Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03385 and LRK53_RS03390 are separated by 63 nucleotides LRK53_RS03390 and LRK53_RS03395 overlap by 4 nucleotides LRK53_RS03395 and LRK53_RS03400 are separated by 165 nucleotides
LRK53_RS03385: LRK53_RS03385 - LysR family transcriptional regulator, at 802,623 to 803,657
_RS03385
LRK53_RS03390: LRK53_RS03390 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 803,721 to 804,317
_RS03390
LRK53_RS03395: LRK53_RS03395 - aminoacyl-tRNA hydrolase, at 804,314 to 804,736
_RS03395
LRK53_RS03400: LRK53_RS03400 - pseudouridine synthase, at 804,902 to 805,609
_RS03400
Position (kb) 803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 802.722 kb on + strand at 802.722 kb on + strand at 802.722 kb on + strand at 802.722 kb on + strand at 802.723 kb on - strand at 802.723 kb on - strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.725 kb on + strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.726 kb on - strand at 802.926 kb on + strand, within LRK53_RS03385 at 802.926 kb on + strand, within LRK53_RS03385 at 802.926 kb on + strand, within LRK53_RS03385 at 802.926 kb on + strand, within LRK53_RS03385 at 802.927 kb on - strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.046 kb on + strand, within LRK53_RS03385 at 803.047 kb on - strand, within LRK53_RS03385 at 803.047 kb on - strand, within LRK53_RS03385 at 803.047 kb on - strand, within LRK53_RS03385 at 803.047 kb on - strand, within LRK53_RS03385 at 803.047 kb on - strand, within LRK53_RS03385 at 803.047 kb on - strand, within LRK53_RS03385 at 803.065 kb on + strand, within LRK53_RS03385 at 803.065 kb on + strand, within LRK53_RS03385 at 803.065 kb on + strand, within LRK53_RS03385 at 803.065 kb on + strand, within LRK53_RS03385 at 803.223 kb on + strand, within LRK53_RS03385 at 803.223 kb on + strand, within LRK53_RS03385 at 803.223 kb on + strand, within LRK53_RS03385 at 803.223 kb on + strand, within LRK53_RS03385 at 803.223 kb on + strand, within LRK53_RS03385 at 803.224 kb on - strand, within LRK53_RS03385 at 803.224 kb on - strand, within LRK53_RS03385 at 803.224 kb on - strand, within LRK53_RS03385 at 803.224 kb on - strand, within LRK53_RS03385 at 803.224 kb on - strand, within LRK53_RS03385 at 803.301 kb on + strand, within LRK53_RS03385 at 803.337 kb on + strand, within LRK53_RS03385 at 803.337 kb on + strand, within LRK53_RS03385 at 803.337 kb on + strand, within LRK53_RS03385 at 803.338 kb on - strand, within LRK53_RS03385 at 803.380 kb on - strand, within LRK53_RS03385 at 803.380 kb on - strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.424 kb on + strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.425 kb on - strand, within LRK53_RS03385 at 803.517 kb on + strand, within LRK53_RS03385 at 803.517 kb on + strand, within LRK53_RS03385 at 803.517 kb on + strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.518 kb on - strand, within LRK53_RS03385 at 803.628 kb on + strand at 803.629 kb on - strand at 803.629 kb on - strand at 803.755 kb on + strand at 803.755 kb on + strand at 803.755 kb on + strand at 803.755 kb on + strand at 803.755 kb on + strand at 803.756 kb on - strand at 803.756 kb on - strand at 803.756 kb on - strand at 804.747 kb on + strand at 804.747 kb on + strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.955 kb on - strand at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 802,722 + -0.1 802,722 + -2.6 802,722 + +0.6 802,722 + -1.0 802,723 - +2.0 802,723 - -1.9 802,725 + +1.2 802,725 + +0.0 802,725 + +1.4 802,725 + -0.4 802,725 + -1.8 802,725 + +0.3 802,725 + -1.5 802,725 + +0.8 802,725 + -0.7 802,726 - -1.6 802,726 - -1.4 802,726 - -0.5 802,726 - -2.3 802,726 - -1.4 802,726 - -0.3 802,726 - -1.1 802,726 - -2.1 802,726 - -0.1 802,726 - -0.7 802,726 - -1.2 802,926 + LRK53_RS03385 0.29 -0.6 802,926 + LRK53_RS03385 0.29 +0.1 802,926 + LRK53_RS03385 0.29 -1.9 802,926 + LRK53_RS03385 0.29 +0.5 802,927 - LRK53_RS03385 0.29 -0.6 803,046 + LRK53_RS03385 0.41 -1.0 803,046 + LRK53_RS03385 0.41 -1.5 803,046 + LRK53_RS03385 0.41 -0.1 803,046 + LRK53_RS03385 0.41 -0.1 803,046 + LRK53_RS03385 0.41 +0.7 803,046 + LRK53_RS03385 0.41 -0.1 803,046 + LRK53_RS03385 0.41 +1.4 803,046 + LRK53_RS03385 0.41 +0.2 803,047 - LRK53_RS03385 0.41 -1.5 803,047 - LRK53_RS03385 0.41 -1.2 803,047 - LRK53_RS03385 0.41 -0.7 803,047 - LRK53_RS03385 0.41 -1.5 803,047 - LRK53_RS03385 0.41 +0.1 803,047 - LRK53_RS03385 0.41 +0.4 803,065 + LRK53_RS03385 0.43 -2.1 803,065 + LRK53_RS03385 0.43 -1.4 803,065 + LRK53_RS03385 0.43 -0.4 803,065 + LRK53_RS03385 0.43 -1.1 803,223 + LRK53_RS03385 0.58 -1.3 803,223 + LRK53_RS03385 0.58 +0.1 803,223 + LRK53_RS03385 0.58 +1.3 803,223 + LRK53_RS03385 0.58 +0.0 803,223 + LRK53_RS03385 0.58 -1.3 803,224 - LRK53_RS03385 0.58 -0.4 803,224 - LRK53_RS03385 0.58 -0.3 803,224 - LRK53_RS03385 0.58 -0.5 803,224 - LRK53_RS03385 0.58 +0.2 803,224 - LRK53_RS03385 0.58 +0.6 803,301 + LRK53_RS03385 0.66 +0.4 803,337 + LRK53_RS03385 0.69 -0.1 803,337 + LRK53_RS03385 0.69 -0.4 803,337 + LRK53_RS03385 0.69 +0.0 803,338 - LRK53_RS03385 0.69 -0.7 803,380 - LRK53_RS03385 0.73 -1.9 803,380 - LRK53_RS03385 0.73 +0.4 803,424 + LRK53_RS03385 0.77 -0.3 803,424 + LRK53_RS03385 0.77 -2.4 803,424 + LRK53_RS03385 0.77 -1.0 803,424 + LRK53_RS03385 0.77 -0.9 803,424 + LRK53_RS03385 0.77 -0.6 803,424 + LRK53_RS03385 0.77 -1.1 803,424 + LRK53_RS03385 0.77 -0.3 803,424 + LRK53_RS03385 0.77 -0.3 803,424 + LRK53_RS03385 0.77 -0.9 803,424 + LRK53_RS03385 0.77 -0.2 803,424 + LRK53_RS03385 0.77 -1.5 803,425 - LRK53_RS03385 0.77 -0.3 803,425 - LRK53_RS03385 0.77 -1.4 803,425 - LRK53_RS03385 0.77 -0.9 803,425 - LRK53_RS03385 0.77 -1.1 803,425 - LRK53_RS03385 0.77 +1.6 803,425 - LRK53_RS03385 0.77 -0.8 803,425 - LRK53_RS03385 0.77 -2.1 803,425 - LRK53_RS03385 0.77 -1.5 803,425 - LRK53_RS03385 0.77 -2.0 803,425 - LRK53_RS03385 0.77 -0.9 803,425 - LRK53_RS03385 0.77 -0.9 803,425 - LRK53_RS03385 0.77 -1.0 803,425 - LRK53_RS03385 0.77 -1.0 803,517 + LRK53_RS03385 0.86 -0.3 803,517 + LRK53_RS03385 0.86 -2.4 803,517 + LRK53_RS03385 0.86 +0.1 803,518 - LRK53_RS03385 0.86 +0.1 803,518 - LRK53_RS03385 0.86 -0.4 803,518 - LRK53_RS03385 0.86 +0.4 803,518 - LRK53_RS03385 0.86 -0.9 803,518 - LRK53_RS03385 0.86 -1.8 803,518 - LRK53_RS03385 0.86 -1.6 803,518 - LRK53_RS03385 0.86 -0.9 803,518 - LRK53_RS03385 0.86 -1.0 803,518 - LRK53_RS03385 0.86 -0.7 803,628 + -2.8 803,629 - -0.8 803,629 - -0.8 803,755 + -1.6 803,755 + -1.2 803,755 + -2.7 803,755 + +0.4 803,755 + -0.4 803,756 - +0.0 803,756 - -0.4 803,756 - -0.2 804,747 + -0.1 804,747 + -1.0 804,748 - -0.4 804,748 - -0.6 804,748 - -1.2 804,955 - -1.5 805,065 + LRK53_RS03400 0.23 -0.3 805,065 + LRK53_RS03400 0.23 +2.3 805,065 + LRK53_RS03400 0.23 -0.4 805,065 + LRK53_RS03400 0.23 -0.6 805,065 + LRK53_RS03400 0.23 -1.5 805,065 + LRK53_RS03400 0.23 +0.5 805,066 - LRK53_RS03400 0.23 +0.1 805,066 - LRK53_RS03400 0.23 -1.4 805,066 - LRK53_RS03400 0.23 -0.5 805,066 - LRK53_RS03400 0.23 -2.3 805,066 - LRK53_RS03400 0.23 -1.3 805,066 - LRK53_RS03400 0.23 -0.1 805,066 - LRK53_RS03400 0.23 -0.9 805,189 - LRK53_RS03400 0.41 +0.0 805,189 - LRK53_RS03400 0.41 -2.2 805,189 - LRK53_RS03400 0.41 -2.0
Or see this region's nucleotide sequence