Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03205 and LRK53_RS03210 are separated by 829 nucleotides LRK53_RS03210 and LRK53_RS03215 are separated by 260 nucleotides
LRK53_RS03205: LRK53_RS03205 - hypothetical protein, at 748,314 to 750,431
_RS03205
LRK53_RS03210: LRK53_RS03210 - IS4 family transposase, at 751,261 to 752,433
_RS03210
LRK53_RS03215: LRK53_RS03215 - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 752,694 to 754,691
_RS03215
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 750.333 kb on - strand at 750.340 kb on + strand at 750.340 kb on + strand at 750.340 kb on + strand at 750.340 kb on + strand at 750.340 kb on + strand at 750.355 kb on - strand at 750.355 kb on - strand at 750.363 kb on + strand at 750.363 kb on + strand at 750.363 kb on + strand at 750.363 kb on + strand at 750.364 kb on - strand at 750.364 kb on - strand at 750.364 kb on - strand at 750.364 kb on - strand at 750.364 kb on - strand at 750.364 kb on - strand at 750.372 kb on + strand at 750.372 kb on + strand at 750.373 kb on - strand at 750.373 kb on - strand at 750.373 kb on - strand at 750.429 kb on + strand at 750.429 kb on + strand at 750.430 kb on - strand at 750.447 kb on - strand at 750.699 kb on + strand at 750.700 kb on - strand at 750.795 kb on + strand at 750.795 kb on + strand at 750.796 kb on - strand at 750.796 kb on - strand at 750.801 kb on + strand at 750.801 kb on + strand at 750.801 kb on + strand at 750.801 kb on + strand at 750.801 kb on + strand at 750.802 kb on - strand at 750.802 kb on - strand at 750.802 kb on - strand at 750.802 kb on - strand at 750.802 kb on - strand at 750.802 kb on - strand at 750.806 kb on + strand at 750.806 kb on + strand at 750.806 kb on + strand at 750.806 kb on + strand at 750.807 kb on - strand at 750.807 kb on - strand at 750.807 kb on - strand at 750.876 kb on + strand at 750.876 kb on + strand at 750.876 kb on + strand at 750.877 kb on - strand at 750.877 kb on - strand at 751.047 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.229 kb on - strand at 752.565 kb on + strand at 752.565 kb on + strand at 752.565 kb on + strand at 752.565 kb on + strand at 752.678 kb on + strand at 752.678 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.716 kb on + strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.717 kb on - strand at 752.910 kb on + strand, within LRK53_RS03215 at 752.910 kb on + strand, within LRK53_RS03215 at 752.910 kb on + strand, within LRK53_RS03215 at 752.911 kb on - strand, within LRK53_RS03215 at 752.911 kb on - strand, within LRK53_RS03215 at 752.911 kb on - strand, within LRK53_RS03215 at 752.911 kb on - strand, within LRK53_RS03215 at 752.992 kb on + strand, within LRK53_RS03215 at 752.992 kb on + strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 752.993 kb on - strand, within LRK53_RS03215 at 753.097 kb on + strand, within LRK53_RS03215 at 753.097 kb on + strand, within LRK53_RS03215 at 753.098 kb on - strand, within LRK53_RS03215 at 753.098 kb on - strand, within LRK53_RS03215 at 753.098 kb on - strand, within LRK53_RS03215 at 753.098 kb on - strand, within LRK53_RS03215 at 753.131 kb on - strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.274 kb on + strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.275 kb on - strand, within LRK53_RS03215 at 753.325 kb on + strand, within LRK53_RS03215 at 753.326 kb on - strand, within LRK53_RS03215 at 753.326 kb on - strand, within LRK53_RS03215 at 753.427 kb on + strand, within LRK53_RS03215 at 753.428 kb on - strand, within LRK53_RS03215 at 753.428 kb on - strand, within LRK53_RS03215 at 753.428 kb on - strand, within LRK53_RS03215
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 750,333 - -1.6 750,340 + -0.4 750,340 + -0.6 750,340 + +0.0 750,340 + -0.4 750,340 + -1.3 750,355 - -1.7 750,355 - -0.1 750,363 + +0.7 750,363 + -1.6 750,363 + +0.2 750,363 + -0.7 750,364 - +0.4 750,364 - +2.5 750,364 - +0.6 750,364 - -1.2 750,364 - -1.1 750,364 - -0.1 750,372 + -1.2 750,372 + +0.2 750,373 - -1.0 750,373 - +0.0 750,373 - -0.6 750,429 + -1.7 750,429 + -1.5 750,430 - -1.1 750,447 - +0.3 750,699 + +2.0 750,700 - +0.0 750,795 + -0.1 750,795 + -1.4 750,796 - -0.2 750,796 - -1.0 750,801 + +0.2 750,801 + +0.0 750,801 + -1.2 750,801 + -0.9 750,801 + -0.1 750,802 - -2.8 750,802 - +1.4 750,802 - -0.9 750,802 - +2.8 750,802 - -1.1 750,802 - -1.0 750,806 + -2.0 750,806 + -1.6 750,806 + -0.5 750,806 + -1.6 750,807 - +0.8 750,807 - +1.3 750,807 - -0.4 750,876 + +1.0 750,876 + -1.3 750,876 + +0.5 750,877 - -0.6 750,877 - -0.4 751,047 - -0.8 751,229 - +0.8 751,229 - +0.4 751,229 - +1.0 751,229 - -0.3 751,229 - +0.2 751,229 - -0.9 751,229 - -0.9 751,229 - +0.1 751,229 - +0.0 752,565 + -2.1 752,565 + -1.4 752,565 + +1.5 752,565 + -1.1 752,678 + -0.2 752,678 + -0.6 752,716 + -1.2 752,716 + +0.6 752,716 + -2.2 752,716 + +0.5 752,716 + -0.3 752,716 + -0.1 752,716 + +0.0 752,716 + -1.0 752,716 + +1.0 752,716 + -0.7 752,716 + -1.0 752,716 + -1.4 752,716 + +1.0 752,716 + -1.1 752,716 + -1.6 752,716 + -1.5 752,716 + +1.5 752,716 + -1.8 752,716 + +1.2 752,716 + -1.6 752,716 + -0.6 752,717 - -0.7 752,717 - -2.3 752,717 - -1.3 752,717 - -0.9 752,717 - -2.1 752,717 - -1.0 752,717 - -2.2 752,717 - +0.3 752,717 - -0.2 752,717 - +0.1 752,717 - +0.4 752,717 - -1.2 752,717 - -0.3 752,717 - -0.3 752,717 - -0.4 752,717 - -1.9 752,717 - -2.8 752,717 - +0.4 752,717 - -0.1 752,910 + LRK53_RS03215 0.11 +0.4 752,910 + LRK53_RS03215 0.11 -1.0 752,910 + LRK53_RS03215 0.11 +0.2 752,911 - LRK53_RS03215 0.11 -0.1 752,911 - LRK53_RS03215 0.11 -0.8 752,911 - LRK53_RS03215 0.11 -1.8 752,911 - LRK53_RS03215 0.11 -1.5 752,992 + LRK53_RS03215 0.15 -0.2 752,992 + LRK53_RS03215 0.15 +0.3 752,993 - LRK53_RS03215 0.15 -0.5 752,993 - LRK53_RS03215 0.15 +0.0 752,993 - LRK53_RS03215 0.15 -1.5 752,993 - LRK53_RS03215 0.15 -1.7 752,993 - LRK53_RS03215 0.15 -0.0 752,993 - LRK53_RS03215 0.15 -1.4 752,993 - LRK53_RS03215 0.15 +1.0 753,097 + LRK53_RS03215 0.20 -1.7 753,097 + LRK53_RS03215 0.20 -0.0 753,098 - LRK53_RS03215 0.20 -0.1 753,098 - LRK53_RS03215 0.20 -2.9 753,098 - LRK53_RS03215 0.20 -0.6 753,098 - LRK53_RS03215 0.20 -0.3 753,131 - LRK53_RS03215 0.22 -0.5 753,274 + LRK53_RS03215 0.29 -0.4 753,274 + LRK53_RS03215 0.29 -0.3 753,274 + LRK53_RS03215 0.29 +1.3 753,274 + LRK53_RS03215 0.29 -0.8 753,274 + LRK53_RS03215 0.29 -0.4 753,274 + LRK53_RS03215 0.29 -3.1 753,274 + LRK53_RS03215 0.29 -1.6 753,274 + LRK53_RS03215 0.29 -2.7 753,274 + LRK53_RS03215 0.29 -2.0 753,274 + LRK53_RS03215 0.29 -1.3 753,274 + LRK53_RS03215 0.29 +0.4 753,274 + LRK53_RS03215 0.29 -0.5 753,274 + LRK53_RS03215 0.29 -0.0 753,275 - LRK53_RS03215 0.29 -0.1 753,275 - LRK53_RS03215 0.29 -0.9 753,275 - LRK53_RS03215 0.29 +0.8 753,275 - LRK53_RS03215 0.29 +0.0 753,275 - LRK53_RS03215 0.29 +0.6 753,275 - LRK53_RS03215 0.29 -1.1 753,275 - LRK53_RS03215 0.29 -0.3 753,275 - LRK53_RS03215 0.29 +0.7 753,275 - LRK53_RS03215 0.29 -0.8 753,275 - LRK53_RS03215 0.29 -1.3 753,275 - LRK53_RS03215 0.29 -1.1 753,275 - LRK53_RS03215 0.29 -2.6 753,275 - LRK53_RS03215 0.29 +1.4 753,275 - LRK53_RS03215 0.29 -0.9 753,275 - LRK53_RS03215 0.29 -0.6 753,325 + LRK53_RS03215 0.32 -0.1 753,326 - LRK53_RS03215 0.32 -1.3 753,326 - LRK53_RS03215 0.32 +0.3 753,427 + LRK53_RS03215 0.37 -0.1 753,428 - LRK53_RS03215 0.37 -1.0 753,428 - LRK53_RS03215 0.37 -0.4 753,428 - LRK53_RS03215 0.37 -0.4
Or see this region's nucleotide sequence