Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02930 and LRK53_RS02935 are separated by 0 nucleotides LRK53_RS02935 and LRK53_RS02940 are separated by 137 nucleotides
LRK53_RS02930: LRK53_RS02930 - DNA topoisomerase I, at 677,554 to 680,037
_RS02930
LRK53_RS02935: LRK53_RS02935 - Sua5/YciO/YrdC/YwlC family protein, at 680,038 to 680,610
_RS02935
LRK53_RS02940: LRK53_RS02940 - AMP-binding protein, at 680,748 to 682,121
_RS02940
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 680.755 kb on - strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.763 kb on + strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.764 kb on - strand at 680.937 kb on + strand, within LRK53_RS02940 at 681.051 kb on + strand, within LRK53_RS02940 at 681.051 kb on + strand, within LRK53_RS02940 at 681.051 kb on + strand, within LRK53_RS02940 at 681.051 kb on + strand, within LRK53_RS02940 at 681.186 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.333 kb on + strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940 at 681.334 kb on - strand, within LRK53_RS02940
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 680,755 - -0.3 680,763 + +0.6 680,763 + -0.2 680,763 + +1.8 680,763 + +1.1 680,763 + -1.4 680,763 + -0.4 680,763 + -1.3 680,763 + +0.8 680,763 + -0.3 680,763 + -0.7 680,763 + -1.2 680,763 + +1.6 680,763 + +1.6 680,764 - +0.8 680,764 - -2.2 680,764 - -0.3 680,764 - -0.5 680,764 - -0.9 680,764 - +0.0 680,764 - -0.2 680,764 - -0.2 680,764 - -1.2 680,764 - -0.4 680,764 - -1.0 680,764 - +1.0 680,764 - +0.8 680,764 - -0.5 680,764 - +0.6 680,764 - +0.0 680,764 - -2.4 680,764 - -0.4 680,764 - -1.5 680,764 - +1.0 680,937 + LRK53_RS02940 0.14 +0.7 681,051 + LRK53_RS02940 0.22 +0.4 681,051 + LRK53_RS02940 0.22 -2.6 681,051 + LRK53_RS02940 0.22 -1.3 681,051 + LRK53_RS02940 0.22 -0.9 681,186 + LRK53_RS02940 0.32 -1.5 681,333 + LRK53_RS02940 0.43 -3.0 681,333 + LRK53_RS02940 0.43 +1.6 681,333 + LRK53_RS02940 0.43 +1.4 681,333 + LRK53_RS02940 0.43 -1.0 681,333 + LRK53_RS02940 0.43 -0.5 681,333 + LRK53_RS02940 0.43 -0.6 681,333 + LRK53_RS02940 0.43 +0.4 681,333 + LRK53_RS02940 0.43 -1.0 681,333 + LRK53_RS02940 0.43 +0.6 681,333 + LRK53_RS02940 0.43 -0.6 681,333 + LRK53_RS02940 0.43 -0.9 681,333 + LRK53_RS02940 0.43 -1.2 681,333 + LRK53_RS02940 0.43 -0.7 681,333 + LRK53_RS02940 0.43 -0.3 681,333 + LRK53_RS02940 0.43 -0.9 681,333 + LRK53_RS02940 0.43 -0.0 681,333 + LRK53_RS02940 0.43 -1.6 681,333 + LRK53_RS02940 0.43 -0.9 681,333 + LRK53_RS02940 0.43 -0.8 681,333 + LRK53_RS02940 0.43 -1.2 681,333 + LRK53_RS02940 0.43 -0.6 681,333 + LRK53_RS02940 0.43 -0.3 681,333 + LRK53_RS02940 0.43 -1.6 681,333 + LRK53_RS02940 0.43 +0.4 681,333 + LRK53_RS02940 0.43 -0.3 681,333 + LRK53_RS02940 0.43 -2.7 681,333 + LRK53_RS02940 0.43 -2.7 681,334 - LRK53_RS02940 0.43 +1.0 681,334 - LRK53_RS02940 0.43 +0.4 681,334 - LRK53_RS02940 0.43 -1.0 681,334 - LRK53_RS02940 0.43 +0.6 681,334 - LRK53_RS02940 0.43 -0.6 681,334 - LRK53_RS02940 0.43 -0.2 681,334 - LRK53_RS02940 0.43 +0.0 681,334 - LRK53_RS02940 0.43 +4.8 681,334 - LRK53_RS02940 0.43 -1.0 681,334 - LRK53_RS02940 0.43 -2.3 681,334 - LRK53_RS02940 0.43 +2.3 681,334 - LRK53_RS02940 0.43 -1.6 681,334 - LRK53_RS02940 0.43 -0.1 681,334 - LRK53_RS02940 0.43 +0.7 681,334 - LRK53_RS02940 0.43 +0.4 681,334 - LRK53_RS02940 0.43 +1.6 681,334 - LRK53_RS02940 0.43 -1.7 681,334 - LRK53_RS02940 0.43 -2.0 681,334 - LRK53_RS02940 0.43 -1.8 681,334 - LRK53_RS02940 0.43 -0.7
Or see this region's nucleotide sequence