Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02770

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02765 and LRK53_RS02770 overlap by 4 nucleotidesLRK53_RS02770 and LRK53_RS02775 overlap by 4 nucleotidesLRK53_RS02775 and LRK53_RS02780 are separated by 3 nucleotides LRK53_RS02765: LRK53_RS02765 - PilN domain-containing protein, at 634,476 to 635,648 _RS02765 LRK53_RS02770: LRK53_RS02770 - type II secretion system protein GspM, at 635,645 to 636,292 _RS02770 LRK53_RS02775: LRK53_RS02775 - general secretion pathway protein GspN, at 636,289 to 637,017 _RS02775 LRK53_RS02780: LRK53_RS02780 - type II secretion system secretin GspD, at 637,021 to 639,351 _RS02780 Position (kb) 635 636 637Strain fitness (log2 ratio) -2 -1 0 1 2 3at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.932 kb on + strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.933 kb on - strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.935 kb on + strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 634.936 kb on - strand, within LRK53_RS02765at 635.360 kb on - strand, within LRK53_RS02765at 635.577 kb on + strandat 635.577 kb on + strandat 635.577 kb on + strandat 635.578 kb on - strandat 635.723 kb on + strand, within LRK53_RS02770at 635.723 kb on + strand, within LRK53_RS02770at 635.723 kb on + strand, within LRK53_RS02770at 635.723 kb on + strand, within LRK53_RS02770at 635.724 kb on - strand, within LRK53_RS02770at 635.724 kb on - strand, within LRK53_RS02770at 635.724 kb on - strand, within LRK53_RS02770at 635.724 kb on - strand, within LRK53_RS02770at 635.810 kb on + strand, within LRK53_RS02770at 635.811 kb on - strand, within LRK53_RS02770at 635.811 kb on - strand, within LRK53_RS02770at 635.811 kb on - strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.125 kb on + strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.126 kb on - strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.152 kb on + strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.153 kb on - strand, within LRK53_RS02770at 636.221 kb on + strand, within LRK53_RS02770at 636.222 kb on - strand, within LRK53_RS02770at 636.222 kb on - strand, within LRK53_RS02770at 637.045 kb on - strandat 637.045 kb on - strandat 637.045 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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634,932 + LRK53_RS02765 0.39 -0.9
634,932 + LRK53_RS02765 0.39 -0.6
634,932 + LRK53_RS02765 0.39 -0.1
634,932 + LRK53_RS02765 0.39 -0.4
634,932 + LRK53_RS02765 0.39 -1.4
634,932 + LRK53_RS02765 0.39 -1.3
634,932 + LRK53_RS02765 0.39 +1.7
634,932 + LRK53_RS02765 0.39 +0.6
634,932 + LRK53_RS02765 0.39 -0.7
634,932 + LRK53_RS02765 0.39 +0.7
634,932 + LRK53_RS02765 0.39 +0.8
634,932 + LRK53_RS02765 0.39 +0.7
634,932 + LRK53_RS02765 0.39 +2.4
634,932 + LRK53_RS02765 0.39 +0.0
634,933 - LRK53_RS02765 0.39 -0.8
634,933 - LRK53_RS02765 0.39 +0.7
634,933 - LRK53_RS02765 0.39 +1.6
634,933 - LRK53_RS02765 0.39 +0.0
634,933 - LRK53_RS02765 0.39 +0.4
634,933 - LRK53_RS02765 0.39 -1.1
634,933 - LRK53_RS02765 0.39 +0.7
634,933 - LRK53_RS02765 0.39 -0.4
634,933 - LRK53_RS02765 0.39 +2.7
634,933 - LRK53_RS02765 0.39 -0.6
634,933 - LRK53_RS02765 0.39 +0.3
634,933 - LRK53_RS02765 0.39 -0.8
634,933 - LRK53_RS02765 0.39 -0.1
634,933 - LRK53_RS02765 0.39 -2.0
634,933 - LRK53_RS02765 0.39 +1.8
634,933 - LRK53_RS02765 0.39 -0.2
634,933 - LRK53_RS02765 0.39 -2.0
634,933 - LRK53_RS02765 0.39 +1.6
634,935 + LRK53_RS02765 0.39 +0.8
634,935 + LRK53_RS02765 0.39 +0.0
634,935 + LRK53_RS02765 0.39 +2.0
634,935 + LRK53_RS02765 0.39 +2.0
634,935 + LRK53_RS02765 0.39 -0.5
634,935 + LRK53_RS02765 0.39 +1.7
634,936 - LRK53_RS02765 0.39 +0.7
634,936 - LRK53_RS02765 0.39 -2.2
634,936 - LRK53_RS02765 0.39 +0.9
634,936 - LRK53_RS02765 0.39 +3.5
634,936 - LRK53_RS02765 0.39 +0.7
634,936 - LRK53_RS02765 0.39 +1.5
635,360 - LRK53_RS02765 0.75 -0.7
635,577 + -1.5
635,577 + +1.0
635,577 + -0.4
635,578 - +0.2
635,723 + LRK53_RS02770 0.12 -0.9
635,723 + LRK53_RS02770 0.12 +0.7
635,723 + LRK53_RS02770 0.12 +0.4
635,723 + LRK53_RS02770 0.12 +0.2
635,724 - LRK53_RS02770 0.12 +0.9
635,724 - LRK53_RS02770 0.12 -0.3
635,724 - LRK53_RS02770 0.12 +1.4
635,724 - LRK53_RS02770 0.12 +1.4
635,810 + LRK53_RS02770 0.25 -0.6
635,811 - LRK53_RS02770 0.26 +0.5
635,811 - LRK53_RS02770 0.26 +1.2
635,811 - LRK53_RS02770 0.26 +0.2
636,125 + LRK53_RS02770 0.74 +0.2
636,125 + LRK53_RS02770 0.74 +0.7
636,125 + LRK53_RS02770 0.74 +1.6
636,125 + LRK53_RS02770 0.74 +1.4
636,125 + LRK53_RS02770 0.74 -0.2
636,125 + LRK53_RS02770 0.74 +0.2
636,125 + LRK53_RS02770 0.74 +0.8
636,125 + LRK53_RS02770 0.74 +0.3
636,125 + LRK53_RS02770 0.74 +1.8
636,126 - LRK53_RS02770 0.74 +0.6
636,126 - LRK53_RS02770 0.74 +0.9
636,126 - LRK53_RS02770 0.74 -1.1
636,126 - LRK53_RS02770 0.74 -0.3
636,126 - LRK53_RS02770 0.74 +0.9
636,126 - LRK53_RS02770 0.74 -0.3
636,152 + LRK53_RS02770 0.78 +0.4
636,152 + LRK53_RS02770 0.78 -1.1
636,152 + LRK53_RS02770 0.78 +0.1
636,152 + LRK53_RS02770 0.78 +0.5
636,152 + LRK53_RS02770 0.78 +0.3
636,153 - LRK53_RS02770 0.78 +1.1
636,153 - LRK53_RS02770 0.78 +0.8
636,153 - LRK53_RS02770 0.78 +0.7
636,153 - LRK53_RS02770 0.78 +0.0
636,153 - LRK53_RS02770 0.78 +0.3
636,221 + LRK53_RS02770 0.89 +1.2
636,222 - LRK53_RS02770 0.89 +1.7
636,222 - LRK53_RS02770 0.89 +0.4
637,045 - +0.0
637,045 - -1.7
637,045 - -2.7

Or see this region's nucleotide sequence