Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02530 and LRK53_RS02535 are separated by 99 nucleotides LRK53_RS02535 and LRK53_RS02540 are separated by 60 nucleotides LRK53_RS02540 and LRK53_RS02545 are separated by 149 nucleotides
LRK53_RS02530: LRK53_RS02530 - hypothetical protein, at 578,466 to 578,663
_RS02530
LRK53_RS02535: LRK53_RS02535 - DUF481 domain-containing protein, at 578,763 to 579,572
_RS02535
LRK53_RS02540: LRK53_RS02540 - hypothetical protein, at 579,633 to 580,304
_RS02540
LRK53_RS02545: LRK53_RS02545 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 580,454 to 581,197
_RS02545
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.722 kb on + strand at 578.722 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.731 kb on + strand at 578.734 kb on + strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.735 kb on - strand at 578.742 kb on - strand at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.111 kb on + strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.112 kb on - strand, within LRK53_RS02535 at 579.132 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.192 kb on + strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.193 kb on - strand, within LRK53_RS02535 at 579.194 kb on + strand, within LRK53_RS02535 at 579.195 kb on - strand, within LRK53_RS02535 at 579.247 kb on - strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.351 kb on + strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.352 kb on - strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.357 kb on + strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.358 kb on - strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.423 kb on + strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.424 kb on - strand, within LRK53_RS02535 at 579.493 kb on + strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.561 kb on + strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.562 kb on - strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.570 kb on + strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.571 kb on - strand at 579.617 kb on + strand at 579.618 kb on - strand at 579.634 kb on + strand at 579.634 kb on + strand at 579.635 kb on - strand at 579.635 kb on - strand at 580.310 kb on + strand at 580.335 kb on + strand at 580.335 kb on + strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.336 kb on - strand at 580.596 kb on - strand, within LRK53_RS02545 at 580.767 kb on - strand, within LRK53_RS02545 at 580.802 kb on + strand, within LRK53_RS02545 at 580.802 kb on + strand, within LRK53_RS02545 at 580.803 kb on - strand, within LRK53_RS02545 at 580.934 kb on + strand, within LRK53_RS02545 at 581.024 kb on + strand, within LRK53_RS02545 at 581.025 kb on - strand, within LRK53_RS02545 at 581.025 kb on - strand, within LRK53_RS02545 at 581.090 kb on + strand, within LRK53_RS02545 at 581.126 kb on + strand at 581.126 kb on + strand at 581.126 kb on + strand at 581.126 kb on + strand at 581.126 kb on + strand at 581.127 kb on - strand at 581.127 kb on - strand at 581.127 kb on - strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.129 kb on + strand at 581.130 kb on - strand at 581.130 kb on - strand at 581.130 kb on - strand at 581.130 kb on - strand at 581.130 kb on - strand at 581.130 kb on - strand at 581.195 kb on + strand at 581.195 kb on + strand at 581.195 kb on + strand at 581.195 kb on + strand at 581.196 kb on - strand at 581.196 kb on - strand at 581.196 kb on - strand at 581.196 kb on - strand at 581.196 kb on - strand at 581.259 kb on + strand at 581.259 kb on + strand at 581.259 kb on + strand at 581.259 kb on + strand at 581.259 kb on + strand at 581.260 kb on - strand at 581.260 kb on - strand at 581.260 kb on - strand at 581.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 578,722 + +0.4 578,722 + -0.5 578,731 + +0.8 578,731 + -1.9 578,731 + -0.9 578,731 + -0.1 578,731 + -2.0 578,734 + +1.4 578,735 - -0.1 578,735 - -0.4 578,735 - -1.8 578,735 - +0.9 578,742 - -2.6 579,111 + LRK53_RS02535 0.43 +0.7 579,111 + LRK53_RS02535 0.43 -0.9 579,111 + LRK53_RS02535 0.43 -1.2 579,111 + LRK53_RS02535 0.43 +0.4 579,111 + LRK53_RS02535 0.43 +0.1 579,111 + LRK53_RS02535 0.43 -0.2 579,112 - LRK53_RS02535 0.43 -0.6 579,112 - LRK53_RS02535 0.43 -1.9 579,112 - LRK53_RS02535 0.43 -0.1 579,112 - LRK53_RS02535 0.43 -0.8 579,112 - LRK53_RS02535 0.43 -0.3 579,112 - LRK53_RS02535 0.43 -1.2 579,112 - LRK53_RS02535 0.43 -1.0 579,132 + LRK53_RS02535 0.46 -2.0 579,192 + LRK53_RS02535 0.53 -0.4 579,192 + LRK53_RS02535 0.53 -0.9 579,192 + LRK53_RS02535 0.53 +0.3 579,192 + LRK53_RS02535 0.53 -0.6 579,192 + LRK53_RS02535 0.53 +1.7 579,192 + LRK53_RS02535 0.53 -0.8 579,193 - LRK53_RS02535 0.53 +0.1 579,193 - LRK53_RS02535 0.53 +0.1 579,193 - LRK53_RS02535 0.53 -0.8 579,193 - LRK53_RS02535 0.53 -1.1 579,194 + LRK53_RS02535 0.53 -0.9 579,195 - LRK53_RS02535 0.53 -1.2 579,247 - LRK53_RS02535 0.60 -1.0 579,351 + LRK53_RS02535 0.73 -2.3 579,351 + LRK53_RS02535 0.73 -0.8 579,351 + LRK53_RS02535 0.73 +0.4 579,351 + LRK53_RS02535 0.73 -1.6 579,351 + LRK53_RS02535 0.73 -0.4 579,351 + LRK53_RS02535 0.73 -1.0 579,351 + LRK53_RS02535 0.73 -0.4 579,351 + LRK53_RS02535 0.73 +0.0 579,351 + LRK53_RS02535 0.73 +1.5 579,351 + LRK53_RS02535 0.73 +0.5 579,351 + LRK53_RS02535 0.73 -2.1 579,351 + LRK53_RS02535 0.73 -1.6 579,351 + LRK53_RS02535 0.73 -0.2 579,351 + LRK53_RS02535 0.73 -1.5 579,352 - LRK53_RS02535 0.73 -0.2 579,352 - LRK53_RS02535 0.73 -0.8 579,352 - LRK53_RS02535 0.73 -0.5 579,352 - LRK53_RS02535 0.73 -0.2 579,352 - LRK53_RS02535 0.73 +1.1 579,352 - LRK53_RS02535 0.73 -0.8 579,352 - LRK53_RS02535 0.73 -0.4 579,352 - LRK53_RS02535 0.73 -0.4 579,352 - LRK53_RS02535 0.73 -2.3 579,357 + LRK53_RS02535 0.73 -1.1 579,357 + LRK53_RS02535 0.73 -0.4 579,357 + LRK53_RS02535 0.73 -0.5 579,357 + LRK53_RS02535 0.73 -1.1 579,357 + LRK53_RS02535 0.73 -0.6 579,357 + LRK53_RS02535 0.73 -0.4 579,357 + LRK53_RS02535 0.73 -0.2 579,357 + LRK53_RS02535 0.73 -0.1 579,357 + LRK53_RS02535 0.73 -1.1 579,357 + LRK53_RS02535 0.73 -1.2 579,357 + LRK53_RS02535 0.73 -1.3 579,357 + LRK53_RS02535 0.73 +0.5 579,357 + LRK53_RS02535 0.73 -1.0 579,357 + LRK53_RS02535 0.73 -0.2 579,358 - LRK53_RS02535 0.73 -0.2 579,358 - LRK53_RS02535 0.73 -0.6 579,358 - LRK53_RS02535 0.73 -1.7 579,358 - LRK53_RS02535 0.73 -0.2 579,358 - LRK53_RS02535 0.73 +0.2 579,358 - LRK53_RS02535 0.73 -2.1 579,358 - LRK53_RS02535 0.73 -1.4 579,358 - LRK53_RS02535 0.73 -0.5 579,358 - LRK53_RS02535 0.73 +0.6 579,358 - LRK53_RS02535 0.73 -1.4 579,423 + LRK53_RS02535 0.81 +0.4 579,423 + LRK53_RS02535 0.81 +0.4 579,423 + LRK53_RS02535 0.81 -1.1 579,423 + LRK53_RS02535 0.81 -0.5 579,423 + LRK53_RS02535 0.81 -0.4 579,423 + LRK53_RS02535 0.81 -2.6 579,423 + LRK53_RS02535 0.81 -2.8 579,424 - LRK53_RS02535 0.82 -0.1 579,424 - LRK53_RS02535 0.82 -0.8 579,424 - LRK53_RS02535 0.82 +0.9 579,424 - LRK53_RS02535 0.82 -1.5 579,424 - LRK53_RS02535 0.82 -1.0 579,424 - LRK53_RS02535 0.82 -0.5 579,424 - LRK53_RS02535 0.82 -0.4 579,424 - LRK53_RS02535 0.82 +0.2 579,424 - LRK53_RS02535 0.82 +1.8 579,424 - LRK53_RS02535 0.82 +1.2 579,493 + -1.8 579,494 - -0.9 579,494 - -1.2 579,494 - -0.6 579,494 - -1.1 579,561 + -0.4 579,561 + -2.5 579,561 + -1.0 579,562 - -1.1 579,562 - -1.2 579,562 - -2.4 579,562 - +2.6 579,562 - +0.6 579,570 + -1.6 579,570 + -2.1 579,570 + -1.0 579,570 + +1.6 579,570 + -1.2 579,570 + -1.0 579,570 + -1.4 579,571 - +0.1 579,571 - +2.1 579,571 - -1.4 579,571 - -0.5 579,571 - -0.5 579,617 + -0.5 579,618 - -0.4 579,634 + +0.9 579,634 + -0.7 579,635 - +1.1 579,635 - -1.8 580,310 + -0.6 580,335 + +2.9 580,335 + -1.3 580,336 - -0.1 580,336 - -2.3 580,336 - -0.2 580,336 - -0.6 580,596 - LRK53_RS02545 0.19 +0.1 580,767 - LRK53_RS02545 0.42 +0.1 580,802 + LRK53_RS02545 0.47 -0.9 580,802 + LRK53_RS02545 0.47 -1.3 580,803 - LRK53_RS02545 0.47 -2.9 580,934 + LRK53_RS02545 0.65 -1.6 581,024 + LRK53_RS02545 0.77 -2.1 581,025 - LRK53_RS02545 0.77 -2.1 581,025 - LRK53_RS02545 0.77 +0.8 581,090 + LRK53_RS02545 0.85 -1.2 581,126 + +0.1 581,126 + -1.1 581,126 + +0.9 581,126 + +2.9 581,126 + -2.7 581,127 - -1.2 581,127 - -1.7 581,127 - -1.5 581,129 + -0.4 581,129 + -0.5 581,129 + -3.5 581,129 + -0.2 581,129 + -0.9 581,129 + -0.1 581,129 + -2.0 581,129 + -0.2 581,129 + +0.7 581,130 - -0.6 581,130 - +0.9 581,130 - -2.0 581,130 - +0.2 581,130 - -0.2 581,130 - -1.9 581,195 + -0.2 581,195 + -0.2 581,195 + -1.2 581,195 + +0.1 581,196 - -0.3 581,196 - -1.2 581,196 - +0.0 581,196 - -0.6 581,196 - -2.2 581,259 + +1.4 581,259 + -2.2 581,259 + -0.4 581,259 + +1.6 581,259 + -1.1 581,260 - -0.9 581,260 - -0.8 581,260 - -0.8 581,260 - -2.3
Or see this region's nucleotide sequence