Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02465 and LRK53_RS02470 are separated by 76 nucleotides LRK53_RS02470 and LRK53_RS02475 are separated by 3 nucleotides LRK53_RS02475 and LRK53_RS02480 are separated by 227 nucleotides LRK53_RS02480 and LRK53_RS02485 are separated by 51 nucleotides
LRK53_RS02465: LRK53_RS02465 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 567,052 to 568,143
_RS02465
LRK53_RS02470: LRK53_RS02470 - ParA family protein, at 568,220 to 569,092
_RS02470
LRK53_RS02475: LRK53_RS02475 - ParB/RepB/Spo0J family partition protein, at 569,096 to 569,965
_RS02475
LRK53_RS02480: LRK53_RS02480 - glycosyltransferase family 2 protein, at 570,193 to 570,909
_RS02480
LRK53_RS02485: LRK53_RS02485 - hypothetical protein, at 570,961 to 571,155
_RS02485
Position (kb) 569
570 Strain fitness (log2 ratio) -2
-1
0
1 at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.182 kb on + strand at 568.207 kb on + strand at 568.207 kb on + strand at 568.207 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.139 kb on + strand at 570.176 kb on + strand at 570.176 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.955 kb on + strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand at 570.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 568,182 + -1.3 568,182 + -1.4 568,182 + -0.4 568,182 + +0.2 568,182 + -0.3 568,182 + -0.0 568,182 + -0.9 568,182 + -0.5 568,207 + +0.2 568,207 + +0.6 568,207 + -0.5 570,139 + -0.7 570,139 + -0.0 570,139 + -1.1 570,139 + -1.1 570,176 + -0.5 570,176 + +0.6 570,955 + -0.5 570,955 + -0.7 570,955 + -0.2 570,955 + -0.4 570,955 + -0.0 570,955 + -0.9 570,956 - +0.9 570,956 - -1.2 570,956 - +0.2 570,956 - -0.2 570,956 - -1.8
Or see this region's nucleotide sequence