Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02175

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02165 and LRK53_RS02170 are separated by 68 nucleotidesLRK53_RS02170 and LRK53_RS02175 are separated by 93 nucleotidesLRK53_RS02175 and LRK53_RS02180 are separated by 3 nucleotidesLRK53_RS02180 and LRK53_RS02185 are separated by 148 nucleotides LRK53_RS02165: LRK53_RS02165 - F0F1 ATP synthase subunit A, at 506,995 to 507,813 _RS02165 LRK53_RS02170: LRK53_RS02170 - F0F1 ATP synthase subunit C, at 507,882 to 508,160 _RS02170 LRK53_RS02175: LRK53_RS02175 - F0F1 ATP synthase subunit B, at 508,254 to 508,724 _RS02175 LRK53_RS02180: LRK53_RS02180 - F0F1 ATP synthase subunit delta, at 508,728 to 509,261 _RS02180 LRK53_RS02185: LRK53_RS02185 - F0F1 ATP synthase subunit alpha, at 509,410 to 510,960 _RS02185 Position (kb) 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1at 508.158 kb on + strandat 508.158 kb on + strandat 508.158 kb on + strandat 508.158 kb on + strandat 508.158 kb on + strandat 508.158 kb on + strandat 508.158 kb on + strandat 509.264 kb on + strandat 509.314 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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508,158 + -2.0
508,158 + -2.9
508,158 + -1.5
508,158 + -1.0
508,158 + +0.2
508,158 + -0.8
508,158 + -1.3
509,264 + +1.5
509,314 + +0.1

Or see this region's nucleotide sequence