Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01935

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01930 and LRK53_RS01935 are separated by 11 nucleotidesLRK53_RS01935 and LRK53_RS01940 are separated by 46 nucleotidesLRK53_RS01940 and LRK53_RS01945 overlap by 14 nucleotides LRK53_RS01930: LRK53_RS01930 - NAD(+) diphosphatase, at 451,201 to 452,172 _RS01930 LRK53_RS01935: LRK53_RS01935 - iron-sulfur cluster insertion protein ErpA, at 452,184 to 452,552 _RS01935 LRK53_RS01940: LRK53_RS01940 - polymer-forming cytoskeletal protein, at 452,599 to 453,027 _RS01940 LRK53_RS01945: LRK53_RS01945 - hypothetical protein, at 453,014 to 453,769 _RS01945 Position (kb) 452 453Strain fitness (log2 ratio) -2 -1 0 1 2at 451.277 kb on + strandat 451.277 kb on + strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.278 kb on - strandat 451.463 kb on + strand, within LRK53_RS01930at 451.463 kb on + strand, within LRK53_RS01930at 451.565 kb on + strand, within LRK53_RS01930at 451.566 kb on - strand, within LRK53_RS01930at 451.566 kb on - strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.781 kb on + strand, within LRK53_RS01930at 451.782 kb on - strand, within LRK53_RS01930at 451.782 kb on - strand, within LRK53_RS01930at 451.919 kb on + strand, within LRK53_RS01930at 451.919 kb on + strand, within LRK53_RS01930at 451.920 kb on - strand, within LRK53_RS01930at 451.920 kb on - strand, within LRK53_RS01930at 451.920 kb on - strand, within LRK53_RS01930at 451.920 kb on - strand, within LRK53_RS01930at 451.920 kb on - strand, within LRK53_RS01930at 451.927 kb on - strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.045 kb on + strand, within LRK53_RS01930at 452.046 kb on - strand, within LRK53_RS01930at 452.046 kb on - strand, within LRK53_RS01930at 452.534 kb on + strandat 452.535 kb on - strandat 452.535 kb on - strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.582 kb on + strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.583 kb on - strandat 452.592 kb on + strandat 452.592 kb on + strandat 452.592 kb on + strandat 452.720 kb on + strand, within LRK53_RS01940at 452.721 kb on - strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.773 kb on + strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.774 kb on - strand, within LRK53_RS01940at 452.863 kb on + strand, within LRK53_RS01940at 452.863 kb on + strand, within LRK53_RS01940at 452.864 kb on - strand, within LRK53_RS01940at 453.015 kb on + strandat 453.015 kb on + strandat 453.016 kb on - strandat 453.186 kb on + strand, within LRK53_RS01945at 453.187 kb on - strand, within LRK53_RS01945at 453.187 kb on - strand, within LRK53_RS01945at 453.187 kb on - strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.438 kb on + strand, within LRK53_RS01945at 453.439 kb on - strand, within LRK53_RS01945at 453.439 kb on - strand, within LRK53_RS01945at 453.439 kb on - strand, within LRK53_RS01945at 453.439 kb on - strand, within LRK53_RS01945

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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451,277 + +0.4
451,277 + -1.4
451,278 - -1.5
451,278 - -0.8
451,278 - -0.2
451,278 - +0.1
451,278 - -0.3
451,278 - -1.5
451,463 + LRK53_RS01930 0.27 -0.6
451,463 + LRK53_RS01930 0.27 -1.6
451,565 + LRK53_RS01930 0.37 -1.6
451,566 - LRK53_RS01930 0.38 -2.7
451,566 - LRK53_RS01930 0.38 -1.8
451,781 + LRK53_RS01930 0.60 +0.7
451,781 + LRK53_RS01930 0.60 -1.8
451,781 + LRK53_RS01930 0.60 -2.3
451,781 + LRK53_RS01930 0.60 -0.4
451,781 + LRK53_RS01930 0.60 -0.2
451,782 - LRK53_RS01930 0.60 -0.6
451,782 - LRK53_RS01930 0.60 -1.0
451,919 + LRK53_RS01930 0.74 +0.0
451,919 + LRK53_RS01930 0.74 +0.8
451,920 - LRK53_RS01930 0.74 -1.1
451,920 - LRK53_RS01930 0.74 -0.6
451,920 - LRK53_RS01930 0.74 -0.7
451,920 - LRK53_RS01930 0.74 -0.3
451,920 - LRK53_RS01930 0.74 -0.8
451,927 - LRK53_RS01930 0.75 -1.8
452,045 + LRK53_RS01930 0.87 -0.6
452,045 + LRK53_RS01930 0.87 -0.3
452,045 + LRK53_RS01930 0.87 +0.4
452,045 + LRK53_RS01930 0.87 -1.0
452,045 + LRK53_RS01930 0.87 -1.9
452,045 + LRK53_RS01930 0.87 -0.5
452,045 + LRK53_RS01930 0.87 -1.9
452,045 + LRK53_RS01930 0.87 -1.3
452,046 - LRK53_RS01930 0.87 -0.2
452,046 - LRK53_RS01930 0.87 +0.9
452,534 + -2.3
452,535 - +0.1
452,535 - +0.2
452,582 + +0.2
452,582 + -1.0
452,582 + +0.0
452,582 + -1.9
452,582 + -1.8
452,582 + +1.0
452,582 + -1.1
452,582 + +0.4
452,582 + -2.0
452,582 + +1.6
452,582 + +1.4
452,582 + -0.2
452,583 - -0.4
452,583 - -0.7
452,583 - -0.6
452,583 - -0.4
452,583 - -1.8
452,583 - +2.0
452,583 - -1.0
452,583 - -1.0
452,592 + -0.1
452,592 + -0.6
452,592 + -1.4
452,720 + LRK53_RS01940 0.28 -2.3
452,721 - LRK53_RS01940 0.28 -0.2
452,773 + LRK53_RS01940 0.41 +1.3
452,773 + LRK53_RS01940 0.41 -0.4
452,773 + LRK53_RS01940 0.41 -1.2
452,773 + LRK53_RS01940 0.41 +1.4
452,773 + LRK53_RS01940 0.41 -2.3
452,773 + LRK53_RS01940 0.41 +0.0
452,773 + LRK53_RS01940 0.41 -1.1
452,773 + LRK53_RS01940 0.41 -1.5
452,773 + LRK53_RS01940 0.41 -1.1
452,773 + LRK53_RS01940 0.41 +0.7
452,773 + LRK53_RS01940 0.41 -1.1
452,773 + LRK53_RS01940 0.41 -1.1
452,773 + LRK53_RS01940 0.41 +1.0
452,774 - LRK53_RS01940 0.41 -1.6
452,774 - LRK53_RS01940 0.41 +1.0
452,774 - LRK53_RS01940 0.41 -2.6
452,774 - LRK53_RS01940 0.41 -0.8
452,774 - LRK53_RS01940 0.41 +0.8
452,774 - LRK53_RS01940 0.41 -2.0
452,774 - LRK53_RS01940 0.41 -0.0
452,774 - LRK53_RS01940 0.41 +1.2
452,774 - LRK53_RS01940 0.41 +1.3
452,863 + LRK53_RS01940 0.62 +1.1
452,863 + LRK53_RS01940 0.62 -0.6
452,864 - LRK53_RS01940 0.62 -2.6
453,015 + -1.4
453,015 + +0.2
453,016 - +2.0
453,186 + LRK53_RS01945 0.23 +2.4
453,187 - LRK53_RS01945 0.23 -0.3
453,187 - LRK53_RS01945 0.23 -0.2
453,187 - LRK53_RS01945 0.23 +0.4
453,438 + LRK53_RS01945 0.56 +1.4
453,438 + LRK53_RS01945 0.56 -2.2
453,438 + LRK53_RS01945 0.56 +1.5
453,438 + LRK53_RS01945 0.56 +0.0
453,438 + LRK53_RS01945 0.56 +1.7
453,438 + LRK53_RS01945 0.56 -2.5
453,438 + LRK53_RS01945 0.56 -0.6
453,439 - LRK53_RS01945 0.56 -1.5
453,439 - LRK53_RS01945 0.56 -1.0
453,439 - LRK53_RS01945 0.56 +0.0
453,439 - LRK53_RS01945 0.56 -1.3

Or see this region's nucleotide sequence