Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01795

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01790 and LRK53_RS01795 are separated by 191 nucleotidesLRK53_RS01795 and LRK53_RS01800 are separated by 36 nucleotides LRK53_RS01790: LRK53_RS01790 - 6-phosphofructokinase, at 419,890 to 421,167 _RS01790 LRK53_RS01795: LRK53_RS01795 - adenylate kinase, at 421,359 to 421,943 _RS01795 LRK53_RS01800: LRK53_RS01800 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 421,980 to 423,425 _RS01800 Position (kb) 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.668 kb on + strand, within LRK53_RS01790at 420.669 kb on - strand, within LRK53_RS01790at 420.669 kb on - strand, within LRK53_RS01790at 420.669 kb on - strand, within LRK53_RS01790at 420.669 kb on - strand, within LRK53_RS01790at 420.669 kb on - strand, within LRK53_RS01790at 420.758 kb on + strand, within LRK53_RS01790at 420.824 kb on + strand, within LRK53_RS01790at 420.824 kb on + strand, within LRK53_RS01790at 420.825 kb on - strand, within LRK53_RS01790at 420.825 kb on - strand, within LRK53_RS01790at 420.876 kb on - strand, within LRK53_RS01790at 420.911 kb on + strand, within LRK53_RS01790at 420.911 kb on + strand, within LRK53_RS01790at 420.912 kb on - strand, within LRK53_RS01790at 421.034 kb on + strand, within LRK53_RS01790at 421.035 kb on - strand, within LRK53_RS01790at 421.035 kb on - strand, within LRK53_RS01790at 421.035 kb on - strand, within LRK53_RS01790at 421.121 kb on + strandat 421.121 kb on + strandat 421.121 kb on + strandat 421.121 kb on + strandat 421.121 kb on + strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.122 kb on - strandat 421.232 kb on + strandat 421.232 kb on + strandat 421.232 kb on + strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 421.233 kb on - strandat 422.082 kb on + strandat 422.082 kb on + strandat 422.083 kb on - strandat 422.136 kb on + strand, within LRK53_RS01800at 422.136 kb on + strand, within LRK53_RS01800at 422.137 kb on - strand, within LRK53_RS01800at 422.137 kb on - strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.217 kb on + strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.218 kb on - strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.241 kb on + strand, within LRK53_RS01800at 422.242 kb on - strand, within LRK53_RS01800at 422.242 kb on - strand, within LRK53_RS01800at 422.242 kb on - strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.442 kb on + strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.443 kb on - strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.550 kb on + strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.551 kb on - strand, within LRK53_RS01800at 422.628 kb on + strand, within LRK53_RS01800at 422.629 kb on - strand, within LRK53_RS01800

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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420,668 + LRK53_RS01790 0.61 -0.7
420,668 + LRK53_RS01790 0.61 -1.1
420,668 + LRK53_RS01790 0.61 -1.3
420,668 + LRK53_RS01790 0.61 -0.7
420,668 + LRK53_RS01790 0.61 -1.9
420,668 + LRK53_RS01790 0.61 +0.7
420,668 + LRK53_RS01790 0.61 +0.1
420,668 + LRK53_RS01790 0.61 +0.2
420,668 + LRK53_RS01790 0.61 -1.3
420,668 + LRK53_RS01790 0.61 -1.9
420,668 + LRK53_RS01790 0.61 +1.6
420,669 - LRK53_RS01790 0.61 +2.1
420,669 - LRK53_RS01790 0.61 -1.6
420,669 - LRK53_RS01790 0.61 -0.3
420,669 - LRK53_RS01790 0.61 +0.7
420,669 - LRK53_RS01790 0.61 -2.3
420,758 + LRK53_RS01790 0.68 -1.5
420,824 + LRK53_RS01790 0.73 -1.5
420,824 + LRK53_RS01790 0.73 -0.5
420,825 - LRK53_RS01790 0.73 -0.8
420,825 - LRK53_RS01790 0.73 -0.6
420,876 - LRK53_RS01790 0.77 -1.3
420,911 + LRK53_RS01790 0.80 +0.8
420,911 + LRK53_RS01790 0.80 -1.3
420,912 - LRK53_RS01790 0.80 -1.4
421,034 + LRK53_RS01790 0.90 +0.3
421,035 - LRK53_RS01790 0.90 +0.1
421,035 - LRK53_RS01790 0.90 -0.3
421,035 - LRK53_RS01790 0.90 +1.3
421,121 + +3.1
421,121 + -0.6
421,121 + -0.3
421,121 + +0.0
421,121 + -2.7
421,122 - +0.2
421,122 - -1.0
421,122 - +0.1
421,122 - +0.3
421,122 - +0.1
421,232 + -0.3
421,232 + +1.1
421,232 + +1.1
421,233 - +1.8
421,233 - +0.1
421,233 - -0.5
421,233 - -3.0
421,233 - -0.0
421,233 - -0.4
422,082 + -0.1
422,082 + -1.0
422,083 - -1.5
422,136 + LRK53_RS01800 0.11 -0.4
422,136 + LRK53_RS01800 0.11 +1.1
422,137 - LRK53_RS01800 0.11 -0.8
422,137 - LRK53_RS01800 0.11 -0.5
422,217 + LRK53_RS01800 0.16 -1.5
422,217 + LRK53_RS01800 0.16 -0.4
422,217 + LRK53_RS01800 0.16 -2.1
422,217 + LRK53_RS01800 0.16 -0.8
422,217 + LRK53_RS01800 0.16 -0.3
422,217 + LRK53_RS01800 0.16 +0.3
422,217 + LRK53_RS01800 0.16 -2.6
422,217 + LRK53_RS01800 0.16 -1.9
422,217 + LRK53_RS01800 0.16 +0.1
422,217 + LRK53_RS01800 0.16 -3.1
422,218 - LRK53_RS01800 0.16 -0.9
422,218 - LRK53_RS01800 0.16 +1.6
422,218 - LRK53_RS01800 0.16 +0.1
422,218 - LRK53_RS01800 0.16 -0.8
422,218 - LRK53_RS01800 0.16 -1.6
422,218 - LRK53_RS01800 0.16 -0.3
422,241 + LRK53_RS01800 0.18 -0.8
422,241 + LRK53_RS01800 0.18 -0.1
422,241 + LRK53_RS01800 0.18 +1.9
422,241 + LRK53_RS01800 0.18 -1.1
422,241 + LRK53_RS01800 0.18 -0.5
422,241 + LRK53_RS01800 0.18 -1.4
422,241 + LRK53_RS01800 0.18 -0.3
422,241 + LRK53_RS01800 0.18 -1.7
422,241 + LRK53_RS01800 0.18 +0.1
422,242 - LRK53_RS01800 0.18 -0.2
422,242 - LRK53_RS01800 0.18 -1.0
422,242 - LRK53_RS01800 0.18 +0.9
422,442 + LRK53_RS01800 0.32 -1.2
422,442 + LRK53_RS01800 0.32 -0.4
422,442 + LRK53_RS01800 0.32 -0.9
422,442 + LRK53_RS01800 0.32 +0.2
422,442 + LRK53_RS01800 0.32 -0.6
422,443 - LRK53_RS01800 0.32 -0.1
422,443 - LRK53_RS01800 0.32 +0.3
422,443 - LRK53_RS01800 0.32 -1.7
422,443 - LRK53_RS01800 0.32 -0.6
422,550 + LRK53_RS01800 0.39 -0.4
422,550 + LRK53_RS01800 0.39 -1.1
422,550 + LRK53_RS01800 0.39 -1.0
422,550 + LRK53_RS01800 0.39 -0.1
422,550 + LRK53_RS01800 0.39 +0.5
422,550 + LRK53_RS01800 0.39 -0.5
422,550 + LRK53_RS01800 0.39 -2.0
422,550 + LRK53_RS01800 0.39 -2.3
422,551 - LRK53_RS01800 0.39 -0.1
422,551 - LRK53_RS01800 0.39 -2.0
422,551 - LRK53_RS01800 0.39 -1.3
422,551 - LRK53_RS01800 0.39 +1.2
422,628 + LRK53_RS01800 0.45 +0.1
422,629 - LRK53_RS01800 0.45 -1.4

Or see this region's nucleotide sequence