Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01760 and LRK53_RS01765 are separated by 65 nucleotides LRK53_RS01765 and LRK53_RS01770 are separated by 95 nucleotides LRK53_RS01770 and LRK53_RS01775 are separated by 10 nucleotides
LRK53_RS01760: LRK53_RS01760 - DUF2333 family protein, at 412,189 to 413,211
_RS01760
LRK53_RS01765: LRK53_RS01765 - inorganic diphosphatase, at 413,277 to 413,816
_RS01765
LRK53_RS01770: LRK53_RS01770 - 2OG-Fe(II) oxygenase, at 413,912 to 414,766
_RS01770
LRK53_RS01775: LRK53_RS01775 - prolyl oligopeptidase family serine peptidase, at 414,777 to 416,909
_RS01775
Position (kb) 413
414 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.413 kb on + strand, within LRK53_RS01760 at 412.414 kb on - strand, within LRK53_RS01760 at 412.414 kb on - strand, within LRK53_RS01760 at 412.414 kb on - strand, within LRK53_RS01760 at 412.414 kb on - strand, within LRK53_RS01760 at 412.414 kb on - strand, within LRK53_RS01760 at 412.687 kb on + strand, within LRK53_RS01760 at 412.687 kb on + strand, within LRK53_RS01760 at 412.687 kb on + strand, within LRK53_RS01760 at 412.688 kb on - strand, within LRK53_RS01760 at 412.688 kb on - strand, within LRK53_RS01760 at 412.688 kb on - strand, within LRK53_RS01760 at 412.688 kb on - strand, within LRK53_RS01760 at 412.688 kb on - strand, within LRK53_RS01760 at 412.732 kb on + strand, within LRK53_RS01760 at 412.732 kb on + strand, within LRK53_RS01760 at 412.733 kb on - strand, within LRK53_RS01760 at 412.733 kb on - strand, within LRK53_RS01760 at 412.733 kb on - strand, within LRK53_RS01760 at 412.733 kb on - strand, within LRK53_RS01760 at 412.733 kb on - strand, within LRK53_RS01760 at 412.733 kb on - strand, within LRK53_RS01760 at 412.759 kb on + strand, within LRK53_RS01760 at 412.759 kb on + strand, within LRK53_RS01760 at 412.759 kb on + strand, within LRK53_RS01760 at 412.759 kb on + strand, within LRK53_RS01760 at 412.759 kb on + strand, within LRK53_RS01760 at 412.759 kb on + strand, within LRK53_RS01760 at 412.760 kb on - strand, within LRK53_RS01760 at 412.760 kb on - strand, within LRK53_RS01760 at 412.760 kb on - strand, within LRK53_RS01760 at 412.760 kb on - strand, within LRK53_RS01760 at 412.760 kb on - strand, within LRK53_RS01760 at 412.806 kb on - strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.939 kb on + strand, within LRK53_RS01760 at 412.940 kb on - strand, within LRK53_RS01760 at 412.954 kb on + strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 412.955 kb on - strand, within LRK53_RS01760 at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.152 kb on + strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.153 kb on - strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.256 kb on + strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.257 kb on - strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.860 kb on + strand at 413.861 kb on - strand at 413.861 kb on - strand at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.036 kb on + strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.037 kb on - strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.120 kb on + strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.121 kb on - strand, within LRK53_RS01770 at 414.213 kb on + strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.214 kb on - strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.231 kb on + strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.232 kb on - strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.657 kb on + strand, within LRK53_RS01770 at 414.658 kb on - strand, within LRK53_RS01770 at 414.658 kb on - strand, within LRK53_RS01770 at 414.778 kb on + strand at 414.778 kb on + strand at 414.778 kb on + strand at 414.779 kb on - strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.805 kb on + strand at 414.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 412,413 + LRK53_RS01760 0.22 -0.3 412,413 + LRK53_RS01760 0.22 -1.0 412,413 + LRK53_RS01760 0.22 -0.3 412,413 + LRK53_RS01760 0.22 -0.6 412,413 + LRK53_RS01760 0.22 -0.3 412,413 + LRK53_RS01760 0.22 -0.4 412,413 + LRK53_RS01760 0.22 -1.5 412,413 + LRK53_RS01760 0.22 -2.1 412,413 + LRK53_RS01760 0.22 -1.3 412,414 - LRK53_RS01760 0.22 +1.8 412,414 - LRK53_RS01760 0.22 -0.7 412,414 - LRK53_RS01760 0.22 +1.0 412,414 - LRK53_RS01760 0.22 +0.4 412,414 - LRK53_RS01760 0.22 -1.3 412,687 + LRK53_RS01760 0.49 -1.9 412,687 + LRK53_RS01760 0.49 +0.6 412,687 + LRK53_RS01760 0.49 +3.8 412,688 - LRK53_RS01760 0.49 -0.6 412,688 - LRK53_RS01760 0.49 -0.3 412,688 - LRK53_RS01760 0.49 -1.0 412,688 - LRK53_RS01760 0.49 +0.5 412,688 - LRK53_RS01760 0.49 -1.4 412,732 + LRK53_RS01760 0.53 -1.5 412,732 + LRK53_RS01760 0.53 +1.9 412,733 - LRK53_RS01760 0.53 -0.7 412,733 - LRK53_RS01760 0.53 +0.6 412,733 - LRK53_RS01760 0.53 -0.7 412,733 - LRK53_RS01760 0.53 +0.2 412,733 - LRK53_RS01760 0.53 +0.9 412,733 - LRK53_RS01760 0.53 -1.1 412,759 + LRK53_RS01760 0.56 -0.7 412,759 + LRK53_RS01760 0.56 -1.1 412,759 + LRK53_RS01760 0.56 -0.9 412,759 + LRK53_RS01760 0.56 +0.8 412,759 + LRK53_RS01760 0.56 +1.8 412,759 + LRK53_RS01760 0.56 -0.1 412,760 - LRK53_RS01760 0.56 -0.5 412,760 - LRK53_RS01760 0.56 -2.3 412,760 - LRK53_RS01760 0.56 -1.8 412,760 - LRK53_RS01760 0.56 -0.5 412,760 - LRK53_RS01760 0.56 -0.1 412,806 - LRK53_RS01760 0.60 -0.2 412,939 + LRK53_RS01760 0.73 -0.2 412,939 + LRK53_RS01760 0.73 -0.2 412,939 + LRK53_RS01760 0.73 -2.8 412,939 + LRK53_RS01760 0.73 -0.0 412,940 - LRK53_RS01760 0.73 +0.2 412,954 + LRK53_RS01760 0.75 -0.9 412,955 - LRK53_RS01760 0.75 -0.9 412,955 - LRK53_RS01760 0.75 -1.2 412,955 - LRK53_RS01760 0.75 -0.6 413,152 + -2.4 413,152 + +0.2 413,152 + -0.3 413,152 + +0.8 413,152 + -0.5 413,152 + -2.4 413,152 + -0.7 413,152 + -1.4 413,152 + -0.1 413,152 + -0.9 413,152 + -0.4 413,152 + -1.7 413,152 + -0.4 413,152 + +0.9 413,152 + +1.6 413,152 + -1.3 413,152 + +0.9 413,152 + -0.3 413,152 + -0.7 413,152 + -1.2 413,153 - -0.6 413,153 - -1.0 413,153 - -1.4 413,153 - +0.2 413,153 - -0.5 413,153 - -3.8 413,153 - -0.5 413,153 - +0.2 413,153 - -0.9 413,153 - -1.7 413,153 - +0.0 413,153 - +0.4 413,153 - +0.0 413,153 - +0.6 413,153 - -1.2 413,153 - -0.6 413,153 - -2.8 413,153 - -0.6 413,153 - -1.8 413,153 - +0.2 413,153 - -2.1 413,153 - -0.3 413,153 - -0.9 413,153 - -0.3 413,153 - -0.6 413,153 - -0.9 413,153 - +1.4 413,256 + -1.1 413,256 + +0.3 413,256 + -0.7 413,256 + +0.3 413,256 + -1.7 413,256 + +0.8 413,256 + -0.8 413,256 + +1.7 413,256 + +0.4 413,256 + -0.3 413,256 + -0.8 413,256 + -0.8 413,256 + -0.6 413,256 + -1.4 413,256 + -0.6 413,256 + -1.7 413,256 + -2.6 413,256 + -0.6 413,256 + -0.4 413,256 + -0.4 413,256 + +0.4 413,256 + -2.8 413,256 + +0.2 413,256 + -0.4 413,256 + +1.0 413,256 + -0.9 413,256 + -0.4 413,256 + +1.3 413,256 + -0.1 413,257 - -0.9 413,257 - +0.7 413,257 - +2.0 413,257 - -2.2 413,257 - -1.5 413,257 - +0.2 413,257 - -0.5 413,257 - +0.0 413,257 - +0.0 413,257 - +0.1 413,257 - -0.8 413,257 - -1.2 413,257 - -1.5 413,257 - -0.6 413,257 - -2.3 413,257 - -0.1 413,257 - -0.8 413,257 - -1.4 413,257 - -1.6 413,257 - -0.7 413,257 - +0.1 413,257 - -1.7 413,257 - +1.2 413,257 - -2.4 413,257 - -3.2 413,257 - -1.0 413,257 - -2.1 413,860 + -1.9 413,860 + +1.7 413,860 + -0.8 413,860 + -2.0 413,860 + +1.4 413,860 + -0.3 413,861 - -0.8 413,861 - -2.5 414,036 + LRK53_RS01770 0.15 -0.3 414,036 + LRK53_RS01770 0.15 +0.0 414,036 + LRK53_RS01770 0.15 -1.8 414,036 + LRK53_RS01770 0.15 -0.1 414,037 - LRK53_RS01770 0.15 -2.5 414,037 - LRK53_RS01770 0.15 +0.8 414,037 - LRK53_RS01770 0.15 -1.2 414,037 - LRK53_RS01770 0.15 +0.2 414,037 - LRK53_RS01770 0.15 +1.7 414,120 + LRK53_RS01770 0.24 +0.1 414,120 + LRK53_RS01770 0.24 +0.2 414,120 + LRK53_RS01770 0.24 -2.6 414,120 + LRK53_RS01770 0.24 +0.1 414,120 + LRK53_RS01770 0.24 -0.8 414,120 + LRK53_RS01770 0.24 -0.9 414,120 + LRK53_RS01770 0.24 -0.8 414,120 + LRK53_RS01770 0.24 -1.9 414,120 + LRK53_RS01770 0.24 -0.4 414,121 - LRK53_RS01770 0.24 -1.3 414,121 - LRK53_RS01770 0.24 -2.4 414,121 - LRK53_RS01770 0.24 +0.3 414,121 - LRK53_RS01770 0.24 -0.9 414,213 + LRK53_RS01770 0.35 +1.5 414,214 - LRK53_RS01770 0.35 -1.5 414,214 - LRK53_RS01770 0.35 +0.4 414,214 - LRK53_RS01770 0.35 +0.5 414,214 - LRK53_RS01770 0.35 -2.5 414,231 + LRK53_RS01770 0.37 -2.6 414,231 + LRK53_RS01770 0.37 -0.4 414,231 + LRK53_RS01770 0.37 -0.3 414,231 + LRK53_RS01770 0.37 -0.9 414,231 + LRK53_RS01770 0.37 +1.4 414,231 + LRK53_RS01770 0.37 +0.1 414,231 + LRK53_RS01770 0.37 +0.3 414,231 + LRK53_RS01770 0.37 -0.7 414,232 - LRK53_RS01770 0.37 -2.2 414,232 - LRK53_RS01770 0.37 +1.3 414,232 - LRK53_RS01770 0.37 -1.6 414,232 - LRK53_RS01770 0.37 -0.4 414,232 - LRK53_RS01770 0.37 -0.9 414,657 + LRK53_RS01770 0.87 -1.6 414,657 + LRK53_RS01770 0.87 -0.4 414,657 + LRK53_RS01770 0.87 -0.5 414,658 - LRK53_RS01770 0.87 -1.0 414,658 - LRK53_RS01770 0.87 -2.1 414,778 + -1.1 414,778 + +0.6 414,778 + -1.0 414,779 - -3.3 414,805 + +2.0 414,805 + -0.3 414,805 + -1.8 414,805 + -1.1 414,805 + +0.4 414,806 - -0.6
Or see this region's nucleotide sequence