Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01715 and LRK53_RS01720 overlap by 4 nucleotides LRK53_RS01720 and LRK53_RS01725 are separated by 264 nucleotides LRK53_RS01725 and LRK53_RS01730 are separated by 126 nucleotides
LRK53_RS01715: LRK53_RS01715 - glycosyltransferase family 4 protein, at 402,914 to 403,990
_RS01715
LRK53_RS01720: LRK53_RS01720 - polysaccharide deacetylase family protein, at 403,987 to 404,688
_RS01720
LRK53_RS01725: LRK53_RS01725 - LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase, at 404,953 to 405,870
_RS01725
LRK53_RS01730: LRK53_RS01730 - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 405,997 to 407,262
_RS01730
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 404.402 kb on + strand, within LRK53_RS01720 at 404.402 kb on + strand, within LRK53_RS01720 at 404.403 kb on - strand, within LRK53_RS01720 at 404.403 kb on - strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.429 kb on + strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.430 kb on - strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.492 kb on + strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.493 kb on - strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.546 kb on + strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.547 kb on - strand, within LRK53_RS01720 at 404.646 kb on - strand at 404.646 kb on - strand at 404.646 kb on - strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.684 kb on + strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.685 kb on - strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.957 kb on + strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 404.958 kb on - strand at 405.891 kb on + strand at 405.891 kb on + strand at 405.891 kb on + strand at 405.892 kb on - strand at 405.892 kb on - strand at 405.892 kb on - strand at 405.892 kb on - strand at 405.892 kb on - strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.964 kb on + strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.965 kb on - strand at 405.966 kb on + strand at 405.966 kb on + strand at 405.966 kb on + strand at 405.967 kb on - strand at 406.003 kb on + strand at 406.003 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.009 kb on + strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.011 kb on + strand at 406.024 kb on + strand at 406.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 404,402 + LRK53_RS01720 0.59 -1.4 404,402 + LRK53_RS01720 0.59 -1.5 404,403 - LRK53_RS01720 0.59 -0.4 404,403 - LRK53_RS01720 0.59 -1.0 404,429 + LRK53_RS01720 0.63 +0.7 404,429 + LRK53_RS01720 0.63 -2.7 404,429 + LRK53_RS01720 0.63 -0.3 404,429 + LRK53_RS01720 0.63 -0.1 404,429 + LRK53_RS01720 0.63 -1.0 404,429 + LRK53_RS01720 0.63 -1.3 404,429 + LRK53_RS01720 0.63 +0.8 404,429 + LRK53_RS01720 0.63 -0.8 404,429 + LRK53_RS01720 0.63 -1.9 404,429 + LRK53_RS01720 0.63 +1.5 404,429 + LRK53_RS01720 0.63 -0.1 404,429 + LRK53_RS01720 0.63 -0.6 404,429 + LRK53_RS01720 0.63 -0.0 404,429 + LRK53_RS01720 0.63 +0.4 404,429 + LRK53_RS01720 0.63 -0.4 404,430 - LRK53_RS01720 0.63 +0.1 404,430 - LRK53_RS01720 0.63 +0.6 404,430 - LRK53_RS01720 0.63 +1.1 404,430 - LRK53_RS01720 0.63 -0.9 404,430 - LRK53_RS01720 0.63 -0.6 404,430 - LRK53_RS01720 0.63 -2.1 404,430 - LRK53_RS01720 0.63 -0.6 404,430 - LRK53_RS01720 0.63 -1.4 404,430 - LRK53_RS01720 0.63 -1.8 404,430 - LRK53_RS01720 0.63 +2.0 404,430 - LRK53_RS01720 0.63 -2.1 404,492 + LRK53_RS01720 0.72 +0.9 404,492 + LRK53_RS01720 0.72 -0.4 404,492 + LRK53_RS01720 0.72 -0.4 404,493 - LRK53_RS01720 0.72 -0.3 404,493 - LRK53_RS01720 0.72 -0.0 404,493 - LRK53_RS01720 0.72 -0.4 404,546 + LRK53_RS01720 0.80 +1.2 404,546 + LRK53_RS01720 0.80 -2.1 404,546 + LRK53_RS01720 0.80 -1.1 404,547 - LRK53_RS01720 0.80 -1.2 404,547 - LRK53_RS01720 0.80 -1.3 404,547 - LRK53_RS01720 0.80 -1.0 404,646 - -0.8 404,646 - -1.5 404,646 - -2.2 404,684 + -0.6 404,684 + -0.8 404,684 + +0.4 404,684 + -1.4 404,684 + -0.8 404,684 + +0.1 404,684 + -1.1 404,684 + +0.0 404,684 + -1.6 404,684 + -0.3 404,684 + -1.2 404,684 + -0.7 404,684 + -1.7 404,684 + -0.1 404,684 + -0.3 404,684 + -2.7 404,684 + -0.4 404,684 + -1.4 404,684 + +0.0 404,684 + -1.5 404,684 + -1.7 404,684 + -0.4 404,684 + -0.7 404,685 - -0.3 404,685 - -1.4 404,685 - -0.3 404,685 - -0.4 404,685 - -2.7 404,685 - -0.8 404,685 - -2.5 404,685 - -0.4 404,685 - -0.3 404,685 - -0.7 404,685 - -1.5 404,685 - -1.7 404,685 - -0.3 404,685 - -0.3 404,685 - -0.4 404,685 - -1.3 404,685 - -0.4 404,685 - -1.1 404,685 - -1.1 404,685 - -3.0 404,685 - -0.4 404,957 + -1.5 404,957 + -2.0 404,957 + -0.6 404,957 + -0.8 404,957 + -0.3 404,957 + -1.1 404,958 - +1.2 404,958 - -0.4 404,958 - +0.2 404,958 - +1.3 404,958 - +1.9 404,958 - -1.9 405,891 + -0.6 405,891 + -0.5 405,891 + -0.7 405,892 - -1.0 405,892 - -0.7 405,892 - +0.6 405,892 - -0.6 405,892 - -1.1 405,964 + -1.4 405,964 + -0.4 405,964 + -0.1 405,964 + -0.4 405,964 + -2.3 405,964 + -0.3 405,964 + +0.4 405,964 + -0.9 405,964 + +0.6 405,964 + +0.7 405,964 + -0.4 405,965 - +1.9 405,965 - -0.7 405,965 - -1.8 405,965 - -1.5 405,965 - -1.3 405,965 - +0.5 405,965 - -1.1 405,965 - +0.2 405,966 + +1.4 405,966 + -0.7 405,966 + -1.6 405,967 - -0.6 406,003 + -0.7 406,003 + -0.6 406,009 + -2.7 406,009 + -1.4 406,009 + -2.0 406,009 + +0.2 406,009 + +0.5 406,009 + +0.0 406,009 + -1.1 406,009 + +0.0 406,011 + +0.4 406,011 + -1.4 406,011 + -0.2 406,011 + -0.9 406,011 + +1.3 406,011 + -0.1 406,011 + -2.2 406,024 + -2.4 406,024 + -1.4
Or see this region's nucleotide sequence