Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01485

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01475 and LRK53_RS01480 are separated by 153 nucleotidesLRK53_RS01480 and LRK53_RS01485 overlap by 41 nucleotidesLRK53_RS01485 and LRK53_RS01490 are separated by 2 nucleotides LRK53_RS01475: LRK53_RS01475 - hypothetical protein, at 354,508 to 354,942 _RS01475 LRK53_RS01480: LRK53_RS01480 - winged helix-turn-helix domain-containing protein, at 355,096 to 355,620 _RS01480 LRK53_RS01485: LRK53_RS01485 - IS630 family transposase, at 355,580 to 356,161 _RS01485 LRK53_RS01490: LRK53_RS01490 - glutathionylspermidine synthase family protein, at 356,164 to 357,342 _RS01490 Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1at 354.689 kb on + strand, within LRK53_RS01475at 354.690 kb on - strand, within LRK53_RS01475at 354.690 kb on - strand, within LRK53_RS01475at 354.690 kb on - strand, within LRK53_RS01475at 354.806 kb on + strand, within LRK53_RS01475at 354.806 kb on + strand, within LRK53_RS01475at 354.807 kb on - strand, within LRK53_RS01475at 354.887 kb on + strand, within LRK53_RS01475at 354.887 kb on + strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.888 kb on - strand, within LRK53_RS01475at 354.974 kb on + strandat 354.974 kb on + strandat 354.975 kb on - strandat 354.975 kb on - strandat 354.975 kb on - strandat 354.975 kb on - strandat 356.142 kb on + strandat 356.159 kb on + strandat 356.159 kb on + strandat 356.285 kb on - strand, within LRK53_RS01490at 356.364 kb on - strand, within LRK53_RS01490at 356.603 kb on + strand, within LRK53_RS01490at 356.604 kb on - strand, within LRK53_RS01490at 356.604 kb on - strand, within LRK53_RS01490at 356.643 kb on - strand, within LRK53_RS01490at 356.771 kb on + strand, within LRK53_RS01490at 356.771 kb on + strand, within LRK53_RS01490at 356.771 kb on + strand, within LRK53_RS01490at 356.771 kb on + strand, within LRK53_RS01490at 356.771 kb on + strand, within LRK53_RS01490at 356.772 kb on - strand, within LRK53_RS01490at 356.772 kb on - strand, within LRK53_RS01490at 356.772 kb on - strand, within LRK53_RS01490at 356.772 kb on - strand, within LRK53_RS01490at 356.772 kb on - strand, within LRK53_RS01490at 356.876 kb on + strand, within LRK53_RS01490at 356.876 kb on + strand, within LRK53_RS01490at 356.876 kb on + strand, within LRK53_RS01490at 356.876 kb on + strand, within LRK53_RS01490at 356.876 kb on + strand, within LRK53_RS01490at 356.876 kb on + strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.877 kb on - strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.987 kb on + strand, within LRK53_RS01490at 356.988 kb on - strand, within LRK53_RS01490at 356.988 kb on - strand, within LRK53_RS01490at 356.988 kb on - strand, within LRK53_RS01490at 356.988 kb on - strand, within LRK53_RS01490at 356.988 kb on - strand, within LRK53_RS01490at 356.988 kb on - strand, within LRK53_RS01490at 356.999 kb on + strand, within LRK53_RS01490at 356.999 kb on + strand, within LRK53_RS01490at 356.999 kb on + strand, within LRK53_RS01490at 357.000 kb on - strand, within LRK53_RS01490at 357.000 kb on - strand, within LRK53_RS01490at 357.026 kb on + strand, within LRK53_RS01490at 357.026 kb on + strand, within LRK53_RS01490at 357.047 kb on + strand, within LRK53_RS01490at 357.047 kb on + strand, within LRK53_RS01490at 357.048 kb on - strand, within LRK53_RS01490at 357.053 kb on + strand, within LRK53_RS01490at 357.054 kb on - strand, within LRK53_RS01490at 357.054 kb on - strand, within LRK53_RS01490at 357.054 kb on - strand, within LRK53_RS01490

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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354,689 + LRK53_RS01475 0.42 -1.4
354,690 - LRK53_RS01475 0.42 +0.1
354,690 - LRK53_RS01475 0.42 -0.4
354,690 - LRK53_RS01475 0.42 -1.4
354,806 + LRK53_RS01475 0.69 -3.4
354,806 + LRK53_RS01475 0.69 -0.4
354,807 - LRK53_RS01475 0.69 +0.1
354,887 + LRK53_RS01475 0.87 -0.4
354,887 + LRK53_RS01475 0.87 -0.3
354,888 - LRK53_RS01475 0.87 -1.3
354,888 - LRK53_RS01475 0.87 -0.5
354,888 - LRK53_RS01475 0.87 -0.7
354,888 - LRK53_RS01475 0.87 -1.9
354,888 - LRK53_RS01475 0.87 -0.1
354,888 - LRK53_RS01475 0.87 +0.3
354,888 - LRK53_RS01475 0.87 -0.3
354,888 - LRK53_RS01475 0.87 -0.5
354,974 + -1.4
354,974 + -1.5
354,975 - +1.1
354,975 - -1.4
354,975 - -2.0
354,975 - -1.2
356,142 + -1.6
356,159 + +0.1
356,159 + +0.8
356,285 - LRK53_RS01490 0.10 +0.3
356,364 - LRK53_RS01490 0.17 +0.1
356,603 + LRK53_RS01490 0.37 -1.7
356,604 - LRK53_RS01490 0.37 -2.3
356,604 - LRK53_RS01490 0.37 -0.3
356,643 - LRK53_RS01490 0.41 +0.3
356,771 + LRK53_RS01490 0.51 -1.0
356,771 + LRK53_RS01490 0.51 -0.1
356,771 + LRK53_RS01490 0.51 -0.4
356,771 + LRK53_RS01490 0.51 -0.4
356,771 + LRK53_RS01490 0.51 -2.1
356,772 - LRK53_RS01490 0.52 -0.9
356,772 - LRK53_RS01490 0.52 +1.2
356,772 - LRK53_RS01490 0.52 -2.0
356,772 - LRK53_RS01490 0.52 -0.5
356,772 - LRK53_RS01490 0.52 +0.1
356,876 + LRK53_RS01490 0.60 -0.6
356,876 + LRK53_RS01490 0.60 +1.3
356,876 + LRK53_RS01490 0.60 -2.3
356,876 + LRK53_RS01490 0.60 +0.4
356,876 + LRK53_RS01490 0.60 -2.3
356,876 + LRK53_RS01490 0.60 +1.1
356,877 - LRK53_RS01490 0.60 -0.6
356,877 - LRK53_RS01490 0.60 -1.9
356,877 - LRK53_RS01490 0.60 -0.7
356,877 - LRK53_RS01490 0.60 -0.4
356,877 - LRK53_RS01490 0.60 -1.2
356,877 - LRK53_RS01490 0.60 -1.7
356,877 - LRK53_RS01490 0.60 -1.3
356,877 - LRK53_RS01490 0.60 -1.0
356,877 - LRK53_RS01490 0.60 -0.5
356,877 - LRK53_RS01490 0.60 +0.7
356,987 + LRK53_RS01490 0.70 -0.7
356,987 + LRK53_RS01490 0.70 -0.3
356,987 + LRK53_RS01490 0.70 +0.3
356,987 + LRK53_RS01490 0.70 +0.1
356,987 + LRK53_RS01490 0.70 -0.4
356,987 + LRK53_RS01490 0.70 +0.5
356,987 + LRK53_RS01490 0.70 +1.4
356,988 - LRK53_RS01490 0.70 +0.5
356,988 - LRK53_RS01490 0.70 -0.3
356,988 - LRK53_RS01490 0.70 +0.1
356,988 - LRK53_RS01490 0.70 -1.2
356,988 - LRK53_RS01490 0.70 -0.3
356,988 - LRK53_RS01490 0.70 -0.6
356,999 + LRK53_RS01490 0.71 -2.7
356,999 + LRK53_RS01490 0.71 -1.8
356,999 + LRK53_RS01490 0.71 -0.8
357,000 - LRK53_RS01490 0.71 -1.1
357,000 - LRK53_RS01490 0.71 +0.3
357,026 + LRK53_RS01490 0.73 -0.8
357,026 + LRK53_RS01490 0.73 -0.7
357,047 + LRK53_RS01490 0.75 -1.3
357,047 + LRK53_RS01490 0.75 -0.8
357,048 - LRK53_RS01490 0.75 -1.3
357,053 + LRK53_RS01490 0.75 -0.4
357,054 - LRK53_RS01490 0.75 -0.1
357,054 - LRK53_RS01490 0.75 -1.5
357,054 - LRK53_RS01490 0.75 -0.9

Or see this region's nucleotide sequence