Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS01460

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS01450 and LRK53_RS01455 are separated by 2 nucleotidesLRK53_RS01455 and LRK53_RS01460 are separated by 69 nucleotidesLRK53_RS01460 and LRK53_RS01465 are separated by 255 nucleotides LRK53_RS01450: LRK53_RS01450 - EF-hand domain-containing protein, at 348,961 to 349,284 _RS01450 LRK53_RS01455: LRK53_RS01455 - GTP cyclohydrolase I FolE, at 349,287 to 349,892 _RS01455 LRK53_RS01460: LRK53_RS01460 - DNA recombination protein RmuC, at 349,962 to 351,491 _RS01460 LRK53_RS01465: LRK53_RS01465 - FAD-dependent oxidoreductase, at 351,747 to 352,940 _RS01465 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 348.998 kb on + strand, within LRK53_RS01450at 348.998 kb on + strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 348.999 kb on - strand, within LRK53_RS01450at 349.052 kb on + strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.053 kb on - strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.154 kb on + strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.155 kb on - strand, within LRK53_RS01450at 349.163 kb on + strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.164 kb on - strand, within LRK53_RS01450at 349.215 kb on - strand, within LRK53_RS01450at 349.892 kb on + strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.893 kb on - strandat 349.919 kb on + strandat 349.920 kb on - strandat 349.991 kb on + strandat 349.992 kb on - strandat 349.992 kb on - strandat 349.992 kb on - strandat 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.233 kb on + strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.234 kb on - strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.299 kb on + strand, within LRK53_RS01460at 350.300 kb on - strand, within LRK53_RS01460at 350.300 kb on - strand, within LRK53_RS01460at 350.316 kb on + strand, within LRK53_RS01460at 350.330 kb on + strand, within LRK53_RS01460at 350.330 kb on + strand, within LRK53_RS01460at 350.330 kb on + strand, within LRK53_RS01460at 350.331 kb on - strand, within LRK53_RS01460at 350.368 kb on + strand, within LRK53_RS01460at 350.461 kb on + strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.462 kb on - strand, within LRK53_RS01460at 350.473 kb on + strand, within LRK53_RS01460at 350.473 kb on + strand, within LRK53_RS01460at 350.474 kb on - strand, within LRK53_RS01460at 350.474 kb on - strand, within LRK53_RS01460at 350.579 kb on - strand, within LRK53_RS01460at 350.715 kb on + strand, within LRK53_RS01460at 350.715 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.074 kb on + strand, within LRK53_RS01460at 351.075 kb on - strand, within LRK53_RS01460at 351.338 kb on - strand, within LRK53_RS01460at 351.423 kb on + strandat 351.447 kb on + strandat 351.447 kb on + strandat 351.447 kb on + strandat 351.447 kb on + strandat 351.535 kb on + strandat 351.536 kb on - strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.655 kb on + strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.656 kb on - strandat 351.765 kb on + strandat 351.765 kb on + strandat 351.765 kb on + strandat 351.766 kb on - strandat 351.766 kb on - strandat 351.873 kb on + strand, within LRK53_RS01465at 351.968 kb on + strand, within LRK53_RS01465at 351.969 kb on - strand, within LRK53_RS01465at 351.969 kb on - strand, within LRK53_RS01465at 352.035 kb on + strand, within LRK53_RS01465at 352.035 kb on + strand, within LRK53_RS01465at 352.134 kb on + strand, within LRK53_RS01465at 352.284 kb on + strand, within LRK53_RS01465at 352.305 kb on + strand, within LRK53_RS01465at 352.306 kb on - strand, within LRK53_RS01465at 352.306 kb on - strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.317 kb on + strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.318 kb on - strand, within LRK53_RS01465at 352.320 kb on + strand, within LRK53_RS01465at 352.321 kb on - strand, within LRK53_RS01465at 352.321 kb on - strand, within LRK53_RS01465

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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348,998 + LRK53_RS01450 0.11 +0.4
348,998 + LRK53_RS01450 0.11 +1.2
348,999 - LRK53_RS01450 0.12 +2.0
348,999 - LRK53_RS01450 0.12 -1.3
349,052 + LRK53_RS01450 0.28 -1.3
349,053 - LRK53_RS01450 0.28 -0.4
349,053 - LRK53_RS01450 0.28 -0.3
349,053 - LRK53_RS01450 0.28 +0.5
349,053 - LRK53_RS01450 0.28 -0.3
349,154 + LRK53_RS01450 0.60 -1.9
349,154 + LRK53_RS01450 0.60 +1.9
349,154 + LRK53_RS01450 0.60 +1.3
349,154 + LRK53_RS01450 0.60 -1.2
349,154 + LRK53_RS01450 0.60 -1.4
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 +0.7
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 -1.9
349,154 + LRK53_RS01450 0.60 -0.7
349,154 + LRK53_RS01450 0.60 -4.1
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 -1.0
349,154 + LRK53_RS01450 0.60 -0.3
349,154 + LRK53_RS01450 0.60 +0.7
349,154 + LRK53_RS01450 0.60 -1.4
349,154 + LRK53_RS01450 0.60 -0.1
349,154 + LRK53_RS01450 0.60 -0.6
349,154 + LRK53_RS01450 0.60 -1.5
349,154 + LRK53_RS01450 0.60 -0.9
349,154 + LRK53_RS01450 0.60 -0.8
349,154 + LRK53_RS01450 0.60 -1.8
349,154 + LRK53_RS01450 0.60 +0.0
349,155 - LRK53_RS01450 0.60 -0.3
349,155 - LRK53_RS01450 0.60 -0.3
349,155 - LRK53_RS01450 0.60 -1.6
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 -1.5
349,155 - LRK53_RS01450 0.60 +0.2
349,155 - LRK53_RS01450 0.60 +1.2
349,155 - LRK53_RS01450 0.60 -0.2
349,155 - LRK53_RS01450 0.60 -2.1
349,155 - LRK53_RS01450 0.60 +0.8
349,155 - LRK53_RS01450 0.60 -0.7
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 -1.1
349,155 - LRK53_RS01450 0.60 -0.9
349,155 - LRK53_RS01450 0.60 -2.4
349,155 - LRK53_RS01450 0.60 -0.7
349,155 - LRK53_RS01450 0.60 +0.3
349,155 - LRK53_RS01450 0.60 +1.4
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 -0.1
349,155 - LRK53_RS01450 0.60 -1.5
349,155 - LRK53_RS01450 0.60 -1.9
349,163 + LRK53_RS01450 0.62 -0.3
349,164 - LRK53_RS01450 0.63 +0.6
349,164 - LRK53_RS01450 0.63 -1.1
349,215 - LRK53_RS01450 0.78 -0.4
349,892 + +2.0
349,893 - -1.0
349,893 - -1.5
349,893 - -0.9
349,893 - -1.0
349,893 - -0.3
349,893 - -1.5
349,893 - +0.4
349,893 - -1.9
349,893 - -0.9
349,919 + -0.8
349,920 - -1.4
349,991 + -2.3
349,992 - -1.6
349,992 - -0.2
349,992 - -1.2
350,233 + LRK53_RS01460 0.18 +0.3
350,233 + LRK53_RS01460 0.18 -1.4
350,233 + LRK53_RS01460 0.18 -0.1
350,233 + LRK53_RS01460 0.18 -1.1
350,233 + LRK53_RS01460 0.18 -0.4
350,233 + LRK53_RS01460 0.18 +0.8
350,233 + LRK53_RS01460 0.18 -0.1
350,234 - LRK53_RS01460 0.18 -0.9
350,234 - LRK53_RS01460 0.18 -1.1
350,234 - LRK53_RS01460 0.18 -1.1
350,234 - LRK53_RS01460 0.18 -0.7
350,234 - LRK53_RS01460 0.18 +0.0
350,234 - LRK53_RS01460 0.18 -2.5
350,299 + LRK53_RS01460 0.22 +0.0
350,299 + LRK53_RS01460 0.22 -2.3
350,299 + LRK53_RS01460 0.22 -0.7
350,299 + LRK53_RS01460 0.22 -0.4
350,300 - LRK53_RS01460 0.22 -1.4
350,300 - LRK53_RS01460 0.22 -0.4
350,316 + LRK53_RS01460 0.23 +0.0
350,330 + LRK53_RS01460 0.24 -1.1
350,330 + LRK53_RS01460 0.24 -2.1
350,330 + LRK53_RS01460 0.24 -1.4
350,331 - LRK53_RS01460 0.24 +1.7
350,368 + LRK53_RS01460 0.27 -0.7
350,461 + LRK53_RS01460 0.33 -1.1
350,462 - LRK53_RS01460 0.33 +0.2
350,462 - LRK53_RS01460 0.33 -0.3
350,462 - LRK53_RS01460 0.33 +0.0
350,462 - LRK53_RS01460 0.33 -0.4
350,462 - LRK53_RS01460 0.33 -0.6
350,473 + LRK53_RS01460 0.33 -0.4
350,473 + LRK53_RS01460 0.33 +0.9
350,474 - LRK53_RS01460 0.33 +0.2
350,474 - LRK53_RS01460 0.33 -0.2
350,579 - LRK53_RS01460 0.40 -0.3
350,715 + LRK53_RS01460 0.49 -0.1
350,715 + LRK53_RS01460 0.49 +0.4
351,074 + LRK53_RS01460 0.73 -1.1
351,074 + LRK53_RS01460 0.73 -0.4
351,074 + LRK53_RS01460 0.73 -1.6
351,074 + LRK53_RS01460 0.73 -1.9
351,074 + LRK53_RS01460 0.73 +0.9
351,074 + LRK53_RS01460 0.73 +0.3
351,075 - LRK53_RS01460 0.73 -0.6
351,338 - LRK53_RS01460 0.90 -0.8
351,423 + -1.1
351,447 + +1.0
351,447 + -1.1
351,447 + -0.6
351,447 + -1.8
351,535 + -0.6
351,536 - +1.0
351,655 + -2.1
351,655 + -2.2
351,655 + +0.1
351,655 + -0.9
351,655 + -0.3
351,655 + -0.1
351,655 + -0.9
351,655 + -0.7
351,656 - +0.4
351,656 - -0.4
351,656 - -0.1
351,656 - +1.4
351,656 - +0.8
351,656 - -0.7
351,656 - -0.8
351,656 - -2.1
351,656 - -0.1
351,656 - -0.8
351,656 - -1.1
351,656 - -1.2
351,656 - -0.9
351,765 + -0.3
351,765 + -1.5
351,765 + -0.1
351,766 - -1.8
351,766 - -0.3
351,873 + LRK53_RS01465 0.11 -0.9
351,968 + LRK53_RS01465 0.19 -0.3
351,969 - LRK53_RS01465 0.19 +0.4
351,969 - LRK53_RS01465 0.19 -3.5
352,035 + LRK53_RS01465 0.24 +0.0
352,035 + LRK53_RS01465 0.24 -0.7
352,134 + LRK53_RS01465 0.32 -0.8
352,284 + LRK53_RS01465 0.45 -2.0
352,305 + LRK53_RS01465 0.47 -0.7
352,306 - LRK53_RS01465 0.47 -1.7
352,306 - LRK53_RS01465 0.47 -0.5
352,317 + LRK53_RS01465 0.48 -1.3
352,317 + LRK53_RS01465 0.48 -2.3
352,317 + LRK53_RS01465 0.48 -0.1
352,317 + LRK53_RS01465 0.48 -0.9
352,317 + LRK53_RS01465 0.48 -1.9
352,317 + LRK53_RS01465 0.48 -0.8
352,317 + LRK53_RS01465 0.48 -0.1
352,317 + LRK53_RS01465 0.48 +0.0
352,318 - LRK53_RS01465 0.48 +0.0
352,318 - LRK53_RS01465 0.48 -0.4
352,318 - LRK53_RS01465 0.48 -1.5
352,318 - LRK53_RS01465 0.48 -1.2
352,318 - LRK53_RS01465 0.48 -1.1
352,318 - LRK53_RS01465 0.48 -1.8
352,318 - LRK53_RS01465 0.48 -1.6
352,318 - LRK53_RS01465 0.48 -0.9
352,320 + LRK53_RS01465 0.48 -1.1
352,321 - LRK53_RS01465 0.48 -1.1
352,321 - LRK53_RS01465 0.48 -0.9

Or see this region's nucleotide sequence