Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00545 and LRK53_RS00550 are separated by 416 nucleotides LRK53_RS00550 and LRK53_RS00555 are separated by 155 nucleotides LRK53_RS00555 and LRK53_RS00560 are separated by 170 nucleotides
LRK53_RS00545: LRK53_RS00545 - B12-binding domain-containing radical SAM protein, at 119,675 to 121,150
_RS00545
LRK53_RS00550: LRK53_RS00550 - serine kinase, at 121,567 to 122,589
_RS00550
LRK53_RS00555: LRK53_RS00555 - peroxiredoxin, at 122,745 to 123,353
_RS00555
LRK53_RS00560: LRK53_RS00560 - ABC transporter ATP-binding protein/permease, at 123,524 to 125,290
_RS00560
Position (kb) 121
122
123 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 120.933 kb on + strand, within LRK53_RS00545 at 120.933 kb on + strand, within LRK53_RS00545 at 120.933 kb on + strand, within LRK53_RS00545 at 120.934 kb on - strand, within LRK53_RS00545 at 120.934 kb on - strand, within LRK53_RS00545 at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.122 kb on + strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.123 kb on - strand at 121.216 kb on + strand at 121.216 kb on + strand at 121.216 kb on + strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.217 kb on - strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.440 kb on + strand at 121.441 kb on - strand at 121.441 kb on - strand at 121.441 kb on - strand at 121.458 kb on - strand at 121.469 kb on + strand at 121.469 kb on + strand at 121.469 kb on + strand at 121.470 kb on - strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.522 kb on + strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.523 kb on - strand at 121.724 kb on - strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.885 kb on + strand, within LRK53_RS00550 at 121.886 kb on - strand, within LRK53_RS00550 at 121.886 kb on - strand, within LRK53_RS00550 at 121.955 kb on - strand, within LRK53_RS00550 at 121.966 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.197 kb on + strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.198 kb on - strand, within LRK53_RS00550 at 122.464 kb on + strand, within LRK53_RS00550 at 122.465 kb on - strand, within LRK53_RS00550 at 122.465 kb on - strand, within LRK53_RS00550 at 122.465 kb on - strand, within LRK53_RS00550 at 122.465 kb on - strand, within LRK53_RS00550 at 122.465 kb on - strand, within LRK53_RS00550 at 122.465 kb on - strand, within LRK53_RS00550 at 122.614 kb on + strand at 122.615 kb on - strand at 122.650 kb on + strand at 122.650 kb on + strand at 122.650 kb on + strand at 122.650 kb on + strand at 122.650 kb on + strand at 122.650 kb on + strand at 122.650 kb on + strand at 122.651 kb on - strand at 122.651 kb on - strand at 122.651 kb on - strand at 122.651 kb on - strand at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.928 kb on + strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.929 kb on - strand, within LRK53_RS00555 at 122.934 kb on + strand, within LRK53_RS00555 at 123.081 kb on + strand, within LRK53_RS00555 at 123.081 kb on + strand, within LRK53_RS00555 at 123.081 kb on + strand, within LRK53_RS00555 at 123.081 kb on + strand, within LRK53_RS00555 at 123.081 kb on + strand, within LRK53_RS00555 at 123.082 kb on - strand, within LRK53_RS00555 at 123.082 kb on - strand, within LRK53_RS00555 at 123.082 kb on - strand, within LRK53_RS00555 at 123.138 kb on + strand, within LRK53_RS00555 at 123.138 kb on + strand, within LRK53_RS00555 at 123.139 kb on - strand, within LRK53_RS00555 at 123.139 kb on - strand, within LRK53_RS00555 at 123.139 kb on - strand, within LRK53_RS00555 at 123.139 kb on - strand, within LRK53_RS00555 at 123.139 kb on - strand, within LRK53_RS00555 at 123.139 kb on - strand, within LRK53_RS00555
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 120,933 + LRK53_RS00545 0.85 -0.5 120,933 + LRK53_RS00545 0.85 -2.4 120,933 + LRK53_RS00545 0.85 +1.2 120,934 - LRK53_RS00545 0.85 -0.4 120,934 - LRK53_RS00545 0.85 -0.2 121,122 + -0.2 121,122 + -0.5 121,122 + -1.5 121,122 + -1.5 121,122 + +1.2 121,122 + +0.4 121,122 + -1.5 121,123 - -2.0 121,123 - -1.1 121,123 - +0.9 121,123 - -0.5 121,123 - -1.3 121,123 - -1.2 121,216 + -0.5 121,216 + +1.6 121,216 + +0.4 121,217 - +0.7 121,217 - -0.6 121,217 - -0.5 121,217 - -2.6 121,217 - -1.2 121,217 - -1.2 121,440 + -2.1 121,440 + +1.4 121,440 + -1.2 121,440 + +0.9 121,440 + -1.0 121,441 - -2.1 121,441 - -0.3 121,441 - -0.4 121,458 - -0.8 121,469 + -0.8 121,469 + -0.5 121,469 + -1.8 121,470 - -2.3 121,522 + -0.0 121,522 + +0.4 121,522 + -0.9 121,522 + +0.6 121,522 + -1.6 121,522 + -0.2 121,522 + -1.2 121,523 - -0.1 121,523 - -1.8 121,523 - -1.1 121,523 - -0.0 121,523 - -1.2 121,523 - -1.4 121,523 - +0.6 121,724 - LRK53_RS00550 0.15 -1.2 121,885 + LRK53_RS00550 0.31 -1.6 121,885 + LRK53_RS00550 0.31 -1.4 121,885 + LRK53_RS00550 0.31 -0.5 121,885 + LRK53_RS00550 0.31 -1.1 121,885 + LRK53_RS00550 0.31 -1.0 121,885 + LRK53_RS00550 0.31 -0.4 121,885 + LRK53_RS00550 0.31 +0.4 121,885 + LRK53_RS00550 0.31 -1.5 121,885 + LRK53_RS00550 0.31 -0.7 121,886 - LRK53_RS00550 0.31 -0.8 121,886 - LRK53_RS00550 0.31 +1.4 121,955 - LRK53_RS00550 0.38 -0.6 121,966 + LRK53_RS00550 0.39 +1.8 122,197 + LRK53_RS00550 0.62 -0.8 122,197 + LRK53_RS00550 0.62 -1.4 122,197 + LRK53_RS00550 0.62 +0.2 122,197 + LRK53_RS00550 0.62 +1.4 122,197 + LRK53_RS00550 0.62 -3.3 122,197 + LRK53_RS00550 0.62 +1.5 122,197 + LRK53_RS00550 0.62 -1.2 122,198 - LRK53_RS00550 0.62 -2.2 122,198 - LRK53_RS00550 0.62 -0.8 122,198 - LRK53_RS00550 0.62 +0.4 122,198 - LRK53_RS00550 0.62 -0.6 122,198 - LRK53_RS00550 0.62 -2.5 122,198 - LRK53_RS00550 0.62 -0.4 122,198 - LRK53_RS00550 0.62 -0.1 122,198 - LRK53_RS00550 0.62 -1.5 122,198 - LRK53_RS00550 0.62 -1.9 122,464 + LRK53_RS00550 0.88 -2.2 122,465 - LRK53_RS00550 0.88 -0.2 122,465 - LRK53_RS00550 0.88 -1.5 122,465 - LRK53_RS00550 0.88 -1.3 122,465 - LRK53_RS00550 0.88 -0.4 122,465 - LRK53_RS00550 0.88 -1.2 122,465 - LRK53_RS00550 0.88 -1.5 122,614 + +1.6 122,615 - +0.8 122,650 + -0.0 122,650 + -0.3 122,650 + +0.6 122,650 + -1.5 122,650 + -0.3 122,650 + +0.2 122,650 + -0.6 122,651 - -0.3 122,651 - -0.5 122,651 - -0.3 122,651 - -1.3 122,928 + LRK53_RS00555 0.30 -0.4 122,928 + LRK53_RS00555 0.30 -1.4 122,928 + LRK53_RS00555 0.30 -0.2 122,928 + LRK53_RS00555 0.30 +0.4 122,928 + LRK53_RS00555 0.30 -0.0 122,928 + LRK53_RS00555 0.30 -2.4 122,928 + LRK53_RS00555 0.30 -1.0 122,928 + LRK53_RS00555 0.30 -2.1 122,928 + LRK53_RS00555 0.30 -0.8 122,928 + LRK53_RS00555 0.30 +0.8 122,928 + LRK53_RS00555 0.30 -2.1 122,928 + LRK53_RS00555 0.30 -1.4 122,928 + LRK53_RS00555 0.30 -0.2 122,928 + LRK53_RS00555 0.30 -1.8 122,928 + LRK53_RS00555 0.30 -0.2 122,928 + LRK53_RS00555 0.30 +0.6 122,928 + LRK53_RS00555 0.30 -1.3 122,928 + LRK53_RS00555 0.30 +0.0 122,928 + LRK53_RS00555 0.30 +0.4 122,928 + LRK53_RS00555 0.30 -0.2 122,928 + LRK53_RS00555 0.30 -0.8 122,928 + LRK53_RS00555 0.30 -0.8 122,928 + LRK53_RS00555 0.30 -1.3 122,928 + LRK53_RS00555 0.30 +1.6 122,928 + LRK53_RS00555 0.30 -1.4 122,929 - LRK53_RS00555 0.30 -0.5 122,929 - LRK53_RS00555 0.30 -1.7 122,929 - LRK53_RS00555 0.30 -0.2 122,929 - LRK53_RS00555 0.30 -0.2 122,929 - LRK53_RS00555 0.30 +1.8 122,929 - LRK53_RS00555 0.30 -0.0 122,929 - LRK53_RS00555 0.30 -0.9 122,929 - LRK53_RS00555 0.30 -0.3 122,929 - LRK53_RS00555 0.30 +0.6 122,929 - LRK53_RS00555 0.30 +1.6 122,929 - LRK53_RS00555 0.30 +1.1 122,929 - LRK53_RS00555 0.30 -1.4 122,929 - LRK53_RS00555 0.30 +0.8 122,929 - LRK53_RS00555 0.30 -0.6 122,929 - LRK53_RS00555 0.30 -1.3 122,929 - LRK53_RS00555 0.30 -0.8 122,929 - LRK53_RS00555 0.30 -0.8 122,929 - LRK53_RS00555 0.30 -2.6 122,929 - LRK53_RS00555 0.30 +0.4 122,929 - LRK53_RS00555 0.30 -2.6 122,929 - LRK53_RS00555 0.30 -1.5 122,929 - LRK53_RS00555 0.30 -0.2 122,929 - LRK53_RS00555 0.30 -1.7 122,929 - LRK53_RS00555 0.30 -0.3 122,929 - LRK53_RS00555 0.30 -0.2 122,929 - LRK53_RS00555 0.30 +0.2 122,929 - LRK53_RS00555 0.30 +0.2 122,929 - LRK53_RS00555 0.30 -0.1 122,929 - LRK53_RS00555 0.30 -0.3 122,929 - LRK53_RS00555 0.30 -3.2 122,929 - LRK53_RS00555 0.30 +0.1 122,929 - LRK53_RS00555 0.30 -1.8 122,929 - LRK53_RS00555 0.30 -0.4 122,929 - LRK53_RS00555 0.30 -1.4 122,929 - LRK53_RS00555 0.30 +0.5 122,929 - LRK53_RS00555 0.30 +0.2 122,929 - LRK53_RS00555 0.30 -0.4 122,929 - LRK53_RS00555 0.30 -3.2 122,934 + LRK53_RS00555 0.31 +0.7 123,081 + LRK53_RS00555 0.55 -0.7 123,081 + LRK53_RS00555 0.55 +0.6 123,081 + LRK53_RS00555 0.55 +0.5 123,081 + LRK53_RS00555 0.55 +1.4 123,081 + LRK53_RS00555 0.55 +0.2 123,082 - LRK53_RS00555 0.55 +0.3 123,082 - LRK53_RS00555 0.55 +0.8 123,082 - LRK53_RS00555 0.55 -0.1 123,138 + LRK53_RS00555 0.65 +0.7 123,138 + LRK53_RS00555 0.65 -0.6 123,139 - LRK53_RS00555 0.65 +1.2 123,139 - LRK53_RS00555 0.65 +0.2 123,139 - LRK53_RS00555 0.65 -0.4 123,139 - LRK53_RS00555 0.65 -0.6 123,139 - LRK53_RS00555 0.65 +0.2 123,139 - LRK53_RS00555 0.65 -1.2
Or see this region's nucleotide sequence