Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00530 and LRK53_RS00535 are separated by 129 nucleotides LRK53_RS00535 and LRK53_RS00540 are separated by 224 nucleotides
LRK53_RS00530: LRK53_RS00530 - alpha/beta fold hydrolase, at 116,324 to 117,271
_RS00530
LRK53_RS00535: LRK53_RS00535 - CHAD domain-containing protein, at 117,401 to 118,198
_RS00535
LRK53_RS00540: LRK53_RS00540 - nucleotidyltransferase family protein, at 118,423 to 119,667
_RS00540
Position (kb) 117
118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 116.523 kb on + strand, within LRK53_RS00530 at 116.523 kb on + strand, within LRK53_RS00530 at 116.523 kb on + strand, within LRK53_RS00530 at 116.523 kb on + strand, within LRK53_RS00530 at 116.524 kb on - strand, within LRK53_RS00530 at 116.524 kb on - strand, within LRK53_RS00530 at 116.754 kb on + strand, within LRK53_RS00530 at 116.754 kb on + strand, within LRK53_RS00530 at 116.755 kb on - strand, within LRK53_RS00530 at 116.829 kb on + strand, within LRK53_RS00530 at 116.830 kb on - strand, within LRK53_RS00530 at 116.830 kb on - strand, within LRK53_RS00530 at 116.830 kb on - strand, within LRK53_RS00530 at 116.841 kb on + strand, within LRK53_RS00530 at 116.841 kb on + strand, within LRK53_RS00530 at 116.841 kb on + strand, within LRK53_RS00530 at 116.842 kb on - strand, within LRK53_RS00530 at 116.847 kb on + strand, within LRK53_RS00530 at 116.847 kb on + strand, within LRK53_RS00530 at 116.847 kb on + strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 116.848 kb on - strand, within LRK53_RS00530 at 117.084 kb on + strand, within LRK53_RS00530 at 117.084 kb on + strand, within LRK53_RS00530 at 117.102 kb on + strand, within LRK53_RS00530 at 117.102 kb on + strand, within LRK53_RS00530 at 117.102 kb on + strand, within LRK53_RS00530 at 117.103 kb on - strand, within LRK53_RS00530 at 117.103 kb on - strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.120 kb on + strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.121 kb on - strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.123 kb on + strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.124 kb on - strand, within LRK53_RS00530 at 117.339 kb on + strand at 117.339 kb on + strand at 117.339 kb on + strand at 117.340 kb on - strand at 117.340 kb on - strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.371 kb on + strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.372 kb on - strand at 117.479 kb on + strand at 117.479 kb on + strand at 117.662 kb on - strand, within LRK53_RS00535 at 117.662 kb on - strand, within LRK53_RS00535 at 118.268 kb on + strand at 118.301 kb on + strand at 118.301 kb on + strand at 118.301 kb on + strand at 118.424 kb on + strand at 118.424 kb on + strand at 118.424 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.496 kb on + strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 118.497 kb on - strand at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.066 kb on + strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540 at 119.067 kb on - strand, within LRK53_RS00540
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 116,523 + LRK53_RS00530 0.21 -1.2 116,523 + LRK53_RS00530 0.21 +0.0 116,523 + LRK53_RS00530 0.21 +0.4 116,523 + LRK53_RS00530 0.21 -1.7 116,524 - LRK53_RS00530 0.21 -0.5 116,524 - LRK53_RS00530 0.21 -2.5 116,754 + LRK53_RS00530 0.45 -1.6 116,754 + LRK53_RS00530 0.45 -0.1 116,755 - LRK53_RS00530 0.45 +0.8 116,829 + LRK53_RS00530 0.53 -2.2 116,830 - LRK53_RS00530 0.53 -0.6 116,830 - LRK53_RS00530 0.53 -0.9 116,830 - LRK53_RS00530 0.53 -1.4 116,841 + LRK53_RS00530 0.55 -1.5 116,841 + LRK53_RS00530 0.55 -0.1 116,841 + LRK53_RS00530 0.55 +0.8 116,842 - LRK53_RS00530 0.55 -2.5 116,847 + LRK53_RS00530 0.55 -0.4 116,847 + LRK53_RS00530 0.55 +1.1 116,847 + LRK53_RS00530 0.55 -0.4 116,848 - LRK53_RS00530 0.55 -2.2 116,848 - LRK53_RS00530 0.55 -1.1 116,848 - LRK53_RS00530 0.55 -1.1 116,848 - LRK53_RS00530 0.55 -1.5 116,848 - LRK53_RS00530 0.55 -1.0 117,084 + LRK53_RS00530 0.80 -1.4 117,084 + LRK53_RS00530 0.80 -2.6 117,102 + LRK53_RS00530 0.82 -1.8 117,102 + LRK53_RS00530 0.82 -1.3 117,102 + LRK53_RS00530 0.82 -0.7 117,103 - LRK53_RS00530 0.82 +0.0 117,103 - LRK53_RS00530 0.82 +0.8 117,120 + LRK53_RS00530 0.84 -1.4 117,120 + LRK53_RS00530 0.84 -2.0 117,120 + LRK53_RS00530 0.84 -0.9 117,120 + LRK53_RS00530 0.84 -1.5 117,120 + LRK53_RS00530 0.84 +0.0 117,121 - LRK53_RS00530 0.84 -1.6 117,121 - LRK53_RS00530 0.84 +0.2 117,121 - LRK53_RS00530 0.84 -1.6 117,121 - LRK53_RS00530 0.84 +0.0 117,121 - LRK53_RS00530 0.84 -0.5 117,121 - LRK53_RS00530 0.84 -0.2 117,121 - LRK53_RS00530 0.84 -0.4 117,121 - LRK53_RS00530 0.84 -0.6 117,121 - LRK53_RS00530 0.84 +0.4 117,123 + LRK53_RS00530 0.84 -0.5 117,123 + LRK53_RS00530 0.84 +0.8 117,123 + LRK53_RS00530 0.84 -0.2 117,123 + LRK53_RS00530 0.84 +0.4 117,123 + LRK53_RS00530 0.84 -1.9 117,123 + LRK53_RS00530 0.84 -0.3 117,123 + LRK53_RS00530 0.84 -1.6 117,123 + LRK53_RS00530 0.84 +1.6 117,123 + LRK53_RS00530 0.84 +0.3 117,123 + LRK53_RS00530 0.84 -2.2 117,123 + LRK53_RS00530 0.84 +0.5 117,123 + LRK53_RS00530 0.84 +0.2 117,124 - LRK53_RS00530 0.84 -0.4 117,124 - LRK53_RS00530 0.84 -1.4 117,124 - LRK53_RS00530 0.84 -0.4 117,124 - LRK53_RS00530 0.84 -0.3 117,124 - LRK53_RS00530 0.84 -0.8 117,124 - LRK53_RS00530 0.84 +0.1 117,124 - LRK53_RS00530 0.84 -0.4 117,124 - LRK53_RS00530 0.84 -0.6 117,124 - LRK53_RS00530 0.84 +0.0 117,124 - LRK53_RS00530 0.84 -0.1 117,124 - LRK53_RS00530 0.84 -0.2 117,339 + -3.1 117,339 + +0.3 117,339 + +0.6 117,340 - -0.6 117,340 - -0.7 117,371 + -0.8 117,371 + -1.5 117,371 + +0.2 117,371 + +1.6 117,371 + -1.6 117,371 + -0.1 117,371 + -2.6 117,371 + -0.3 117,371 + -1.2 117,371 + +1.8 117,371 + +1.0 117,371 + -0.3 117,371 + -0.3 117,371 + -0.7 117,372 - -0.8 117,372 - -1.0 117,372 - -1.1 117,372 - -0.7 117,372 - +0.4 117,479 + +0.5 117,479 + -1.7 117,662 - LRK53_RS00535 0.33 +0.7 117,662 - LRK53_RS00535 0.33 -0.9 118,268 + -0.8 118,301 + -1.9 118,301 + -1.9 118,301 + -0.8 118,424 + +0.5 118,424 + +0.6 118,424 + -1.1 118,496 + +0.3 118,496 + -1.2 118,496 + -1.0 118,496 + -1.4 118,496 + -0.4 118,496 + -2.0 118,496 + -0.8 118,496 + -1.7 118,496 + -0.6 118,496 + +0.2 118,496 + -2.6 118,496 + +2.6 118,496 + -1.8 118,496 + +0.2 118,496 + -1.0 118,496 + +0.5 118,496 + -0.1 118,496 + -2.2 118,496 + +0.6 118,496 + -0.8 118,496 + +1.5 118,496 + -1.2 118,496 + -1.3 118,496 + -0.2 118,496 + +0.4 118,496 + +0.0 118,496 + -1.5 118,496 + -1.1 118,496 + +0.7 118,496 + -0.2 118,496 + +1.3 118,496 + -1.0 118,496 + -0.8 118,496 + -1.3 118,496 + +0.0 118,496 + -0.2 118,496 + -0.8 118,497 - -0.3 118,497 - +1.8 118,497 - +0.0 118,497 - -2.0 118,497 - -0.7 118,497 - -1.6 118,497 - -1.0 118,497 - -0.2 118,497 - -1.2 118,497 - -0.2 118,497 - -0.5 118,497 - -0.7 118,497 - -0.2 118,497 - -0.7 118,497 - +1.1 118,497 - +0.1 118,497 - -0.9 118,497 - -1.1 118,497 - +1.8 118,497 - +0.3 118,497 - +0.6 118,497 - -0.3 118,497 - +0.2 118,497 - -0.1 118,497 - +0.2 118,497 - -1.3 118,497 - +0.6 118,497 - +0.8 118,497 - -1.0 118,497 - -1.4 118,497 - -1.4 118,497 - -0.2 118,497 - +1.1 118,497 - +0.7 118,497 - -2.2 118,497 - -0.5 118,497 - -0.4 118,497 - +2.2 118,497 - -1.0 118,497 - -2.2 118,497 - -1.5 118,497 - -0.2 118,497 - -1.0 118,497 - -0.6 118,497 - -0.5 118,497 - -1.3 118,497 - -2.9 119,066 + LRK53_RS00540 0.52 +0.4 119,066 + LRK53_RS00540 0.52 +0.4 119,066 + LRK53_RS00540 0.52 +0.0 119,066 + LRK53_RS00540 0.52 -0.3 119,067 - LRK53_RS00540 0.52 +0.4 119,067 - LRK53_RS00540 0.52 -0.9 119,067 - LRK53_RS00540 0.52 +0.0 119,067 - LRK53_RS00540 0.52 -0.1 119,067 - LRK53_RS00540 0.52 -0.9
Or see this region's nucleotide sequence