Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00460 and LRK53_RS00465 are separated by 7 nucleotides LRK53_RS00465 and LRK53_RS00470 overlap by 14 nucleotides LRK53_RS00470 and LRK53_RS00475 overlap by 1 nucleotides
LRK53_RS00460: LRK53_RS00460 - acetyltransferase, at 101,628 to 102,293
_RS00460
LRK53_RS00465: LRK53_RS00465 - hypothetical protein, at 102,301 to 103,248
_RS00465
LRK53_RS00470: LRK53_RS00470 - GNAT family N-acetyltransferase, at 103,235 to 104,167
_RS00470
LRK53_RS00475: LRK53_RS00475 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 104,167 to 105,309
_RS00475
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 102.235 kb on - strand at 102.235 kb on - strand at 102.235 kb on - strand at 102.235 kb on - strand at 102.424 kb on + strand, within LRK53_RS00465 at 102.424 kb on + strand, within LRK53_RS00465 at 102.424 kb on + strand, within LRK53_RS00465 at 102.424 kb on + strand, within LRK53_RS00465 at 102.467 kb on - strand, within LRK53_RS00465 at 102.476 kb on + strand, within LRK53_RS00465 at 102.476 kb on + strand, within LRK53_RS00465 at 102.476 kb on + strand, within LRK53_RS00465 at 102.476 kb on + strand, within LRK53_RS00465 at 102.477 kb on - strand, within LRK53_RS00465 at 102.477 kb on - strand, within LRK53_RS00465 at 102.477 kb on - strand, within LRK53_RS00465 at 102.477 kb on - strand, within LRK53_RS00465 at 102.477 kb on - strand, within LRK53_RS00465 at 102.613 kb on + strand, within LRK53_RS00465 at 102.613 kb on + strand, within LRK53_RS00465 at 102.614 kb on - strand, within LRK53_RS00465 at 102.614 kb on - strand, within LRK53_RS00465 at 102.614 kb on - strand, within LRK53_RS00465 at 102.614 kb on - strand, within LRK53_RS00465 at 102.614 kb on - strand, within LRK53_RS00465 at 102.614 kb on - strand, within LRK53_RS00465 at 102.762 kb on + strand, within LRK53_RS00465 at 102.762 kb on + strand, within LRK53_RS00465 at 102.762 kb on + strand, within LRK53_RS00465 at 102.763 kb on - strand, within LRK53_RS00465 at 102.763 kb on - strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.772 kb on + strand, within LRK53_RS00465 at 102.773 kb on - strand, within LRK53_RS00465 at 102.773 kb on - strand, within LRK53_RS00465 at 102.773 kb on - strand, within LRK53_RS00465 at 102.773 kb on - strand, within LRK53_RS00465 at 102.773 kb on - strand, within LRK53_RS00465 at 102.773 kb on - strand, within LRK53_RS00465 at 102.799 kb on + strand, within LRK53_RS00465 at 102.799 kb on + strand, within LRK53_RS00465 at 102.799 kb on + strand, within LRK53_RS00465 at 102.851 kb on - strand, within LRK53_RS00465 at 102.851 kb on - strand, within LRK53_RS00465 at 102.959 kb on - strand, within LRK53_RS00465 at 102.959 kb on - strand, within LRK53_RS00465 at 102.965 kb on - strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.985 kb on + strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 102.986 kb on - strand, within LRK53_RS00465 at 103.015 kb on + strand, within LRK53_RS00465 at 103.015 kb on + strand, within LRK53_RS00465 at 103.015 kb on + strand, within LRK53_RS00465 at 103.016 kb on - strand, within LRK53_RS00465 at 103.016 kb on - strand, within LRK53_RS00465 at 103.016 kb on - strand, within LRK53_RS00465 at 103.016 kb on - strand, within LRK53_RS00465 at 103.164 kb on - strand at 103.165 kb on + strand at 103.165 kb on + strand at 103.165 kb on + strand at 103.165 kb on + strand at 103.165 kb on + strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.166 kb on - strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.331 kb on + strand, within LRK53_RS00470 at 103.331 kb on + strand, within LRK53_RS00470 at 103.332 kb on - strand, within LRK53_RS00470 at 103.332 kb on - strand, within LRK53_RS00470 at 103.340 kb on + strand, within LRK53_RS00470 at 103.340 kb on + strand, within LRK53_RS00470 at 103.340 kb on + strand, within LRK53_RS00470 at 103.341 kb on - strand, within LRK53_RS00470 at 103.457 kb on + strand, within LRK53_RS00470 at 103.457 kb on + strand, within LRK53_RS00470 at 103.457 kb on + strand, within LRK53_RS00470 at 103.457 kb on + strand, within LRK53_RS00470 at 103.457 kb on + strand, within LRK53_RS00470 at 103.458 kb on - strand, within LRK53_RS00470 at 103.458 kb on - strand, within LRK53_RS00470 at 103.532 kb on + strand, within LRK53_RS00470 at 103.562 kb on + strand, within LRK53_RS00470 at 103.562 kb on + strand, within LRK53_RS00470 at 103.562 kb on + strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.563 kb on - strand, within LRK53_RS00470 at 103.613 kb on + strand, within LRK53_RS00470 at 103.614 kb on - strand, within LRK53_RS00470 at 103.614 kb on - strand, within LRK53_RS00470 at 103.925 kb on + strand, within LRK53_RS00470 at 103.925 kb on + strand, within LRK53_RS00470 at 103.925 kb on + strand, within LRK53_RS00470 at 103.926 kb on - strand, within LRK53_RS00470 at 103.926 kb on - strand, within LRK53_RS00470 at 103.926 kb on - strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.955 kb on + strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 103.956 kb on - strand, within LRK53_RS00470 at 104.045 kb on + strand, within LRK53_RS00470 at 104.045 kb on + strand, within LRK53_RS00470 at 104.045 kb on + strand, within LRK53_RS00470 at 104.045 kb on + strand, within LRK53_RS00470 at 104.046 kb on - strand, within LRK53_RS00470 at 104.046 kb on - strand, within LRK53_RS00470 at 104.046 kb on - strand, within LRK53_RS00470 at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.117 kb on + strand at 104.118 kb on - strand at 104.118 kb on - strand at 104.118 kb on - strand at 104.118 kb on - strand at 104.118 kb on - strand at 104.118 kb on - strand at 104.150 kb on + strand at 104.150 kb on + strand at 104.151 kb on - strand at 104.151 kb on - strand at 104.151 kb on - strand at 104.290 kb on + strand, within LRK53_RS00475 at 104.290 kb on + strand, within LRK53_RS00475 at 104.290 kb on + strand, within LRK53_RS00475 at 104.290 kb on + strand, within LRK53_RS00475 at 104.290 kb on + strand, within LRK53_RS00475 at 104.290 kb on + strand, within LRK53_RS00475 at 104.290 kb on + strand, within LRK53_RS00475 at 104.291 kb on - strand, within LRK53_RS00475 at 104.291 kb on - strand, within LRK53_RS00475 at 104.291 kb on - strand, within LRK53_RS00475 at 104.291 kb on - strand, within LRK53_RS00475 at 104.849 kb on - strand, within LRK53_RS00475 at 104.866 kb on + strand, within LRK53_RS00475 at 104.866 kb on + strand, within LRK53_RS00475 at 104.866 kb on + strand, within LRK53_RS00475 at 104.866 kb on + strand, within LRK53_RS00475 at 104.867 kb on - strand, within LRK53_RS00475 at 104.867 kb on - strand, within LRK53_RS00475 at 104.867 kb on - strand, within LRK53_RS00475 at 104.867 kb on - strand, within LRK53_RS00475 at 104.867 kb on - strand, within LRK53_RS00475 at 104.867 kb on - strand, within LRK53_RS00475
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 102,235 - -0.9 102,235 - -0.5 102,235 - -1.5 102,235 - -2.3 102,424 + LRK53_RS00465 0.13 -1.3 102,424 + LRK53_RS00465 0.13 -1.3 102,424 + LRK53_RS00465 0.13 -1.2 102,424 + LRK53_RS00465 0.13 +0.4 102,467 - LRK53_RS00465 0.18 -1.2 102,476 + LRK53_RS00465 0.18 -1.5 102,476 + LRK53_RS00465 0.18 -0.6 102,476 + LRK53_RS00465 0.18 -1.4 102,476 + LRK53_RS00465 0.18 -1.8 102,477 - LRK53_RS00465 0.19 -1.4 102,477 - LRK53_RS00465 0.19 +0.8 102,477 - LRK53_RS00465 0.19 +0.8 102,477 - LRK53_RS00465 0.19 -0.4 102,477 - LRK53_RS00465 0.19 -1.0 102,613 + LRK53_RS00465 0.33 -1.1 102,613 + LRK53_RS00465 0.33 -2.0 102,614 - LRK53_RS00465 0.33 -1.0 102,614 - LRK53_RS00465 0.33 -0.7 102,614 - LRK53_RS00465 0.33 -0.3 102,614 - LRK53_RS00465 0.33 -1.9 102,614 - LRK53_RS00465 0.33 -1.0 102,614 - LRK53_RS00465 0.33 -1.1 102,762 + LRK53_RS00465 0.49 -1.4 102,762 + LRK53_RS00465 0.49 +1.3 102,762 + LRK53_RS00465 0.49 +1.6 102,763 - LRK53_RS00465 0.49 -0.3 102,763 - LRK53_RS00465 0.49 -1.0 102,772 + LRK53_RS00465 0.50 +0.5 102,772 + LRK53_RS00465 0.50 -0.7 102,772 + LRK53_RS00465 0.50 +1.1 102,772 + LRK53_RS00465 0.50 -1.5 102,772 + LRK53_RS00465 0.50 -0.6 102,772 + LRK53_RS00465 0.50 -0.2 102,772 + LRK53_RS00465 0.50 -0.9 102,773 - LRK53_RS00465 0.50 +0.4 102,773 - LRK53_RS00465 0.50 -0.3 102,773 - LRK53_RS00465 0.50 -0.2 102,773 - LRK53_RS00465 0.50 -0.7 102,773 - LRK53_RS00465 0.50 -0.8 102,773 - LRK53_RS00465 0.50 -2.5 102,799 + LRK53_RS00465 0.53 +0.5 102,799 + LRK53_RS00465 0.53 -2.3 102,799 + LRK53_RS00465 0.53 -0.7 102,851 - LRK53_RS00465 0.58 -0.7 102,851 - LRK53_RS00465 0.58 -1.9 102,959 - LRK53_RS00465 0.69 +1.4 102,959 - LRK53_RS00465 0.69 +0.9 102,965 - LRK53_RS00465 0.70 -0.2 102,985 + LRK53_RS00465 0.72 -0.4 102,985 + LRK53_RS00465 0.72 -1.3 102,985 + LRK53_RS00465 0.72 -0.9 102,985 + LRK53_RS00465 0.72 +0.4 102,985 + LRK53_RS00465 0.72 +0.7 102,985 + LRK53_RS00465 0.72 -3.0 102,985 + LRK53_RS00465 0.72 -2.4 102,986 - LRK53_RS00465 0.72 -0.3 102,986 - LRK53_RS00465 0.72 -1.0 102,986 - LRK53_RS00465 0.72 +0.6 102,986 - LRK53_RS00465 0.72 -0.2 102,986 - LRK53_RS00465 0.72 +0.0 102,986 - LRK53_RS00465 0.72 -1.3 102,986 - LRK53_RS00465 0.72 -0.2 102,986 - LRK53_RS00465 0.72 +0.2 102,986 - LRK53_RS00465 0.72 -1.4 102,986 - LRK53_RS00465 0.72 +2.8 102,986 - LRK53_RS00465 0.72 -0.5 102,986 - LRK53_RS00465 0.72 -1.0 103,015 + LRK53_RS00465 0.75 +0.6 103,015 + LRK53_RS00465 0.75 -0.3 103,015 + LRK53_RS00465 0.75 -2.5 103,016 - LRK53_RS00465 0.75 -0.6 103,016 - LRK53_RS00465 0.75 -0.3 103,016 - LRK53_RS00465 0.75 -1.9 103,016 - LRK53_RS00465 0.75 -1.0 103,164 - -2.8 103,165 + +0.4 103,165 + -0.5 103,165 + +0.2 103,165 + -0.4 103,165 + -2.0 103,166 - -1.3 103,166 - -0.5 103,166 - +0.4 103,166 - -0.8 103,166 - +0.9 103,253 + -1.3 103,253 + +0.1 103,254 - +1.4 103,331 + LRK53_RS00470 0.10 -0.9 103,331 + LRK53_RS00470 0.10 +0.2 103,332 - LRK53_RS00470 0.10 -0.8 103,332 - LRK53_RS00470 0.10 -0.4 103,340 + LRK53_RS00470 0.11 +1.2 103,340 + LRK53_RS00470 0.11 -0.8 103,340 + LRK53_RS00470 0.11 -1.2 103,341 - LRK53_RS00470 0.11 -1.6 103,457 + LRK53_RS00470 0.24 +0.6 103,457 + LRK53_RS00470 0.24 -0.4 103,457 + LRK53_RS00470 0.24 -1.6 103,457 + LRK53_RS00470 0.24 -0.7 103,457 + LRK53_RS00470 0.24 +0.2 103,458 - LRK53_RS00470 0.24 +0.6 103,458 - LRK53_RS00470 0.24 -0.4 103,532 + LRK53_RS00470 0.32 -1.7 103,562 + LRK53_RS00470 0.35 -0.5 103,562 + LRK53_RS00470 0.35 -0.9 103,562 + LRK53_RS00470 0.35 -1.3 103,563 - LRK53_RS00470 0.35 -1.4 103,563 - LRK53_RS00470 0.35 -0.1 103,563 - LRK53_RS00470 0.35 +0.6 103,563 - LRK53_RS00470 0.35 +1.4 103,563 - LRK53_RS00470 0.35 -2.6 103,563 - LRK53_RS00470 0.35 -0.4 103,563 - LRK53_RS00470 0.35 +1.1 103,613 + LRK53_RS00470 0.41 -0.4 103,614 - LRK53_RS00470 0.41 -1.0 103,614 - LRK53_RS00470 0.41 -0.2 103,925 + LRK53_RS00470 0.74 -0.8 103,925 + LRK53_RS00470 0.74 -0.9 103,925 + LRK53_RS00470 0.74 -1.0 103,926 - LRK53_RS00470 0.74 -0.5 103,926 - LRK53_RS00470 0.74 -0.3 103,926 - LRK53_RS00470 0.74 -0.8 103,955 + LRK53_RS00470 0.77 -0.2 103,955 + LRK53_RS00470 0.77 -2.2 103,955 + LRK53_RS00470 0.77 -1.4 103,955 + LRK53_RS00470 0.77 +1.1 103,955 + LRK53_RS00470 0.77 -1.6 103,955 + LRK53_RS00470 0.77 -0.6 103,955 + LRK53_RS00470 0.77 -1.2 103,955 + LRK53_RS00470 0.77 -0.5 103,955 + LRK53_RS00470 0.77 -0.3 103,955 + LRK53_RS00470 0.77 -0.7 103,955 + LRK53_RS00470 0.77 +0.3 103,956 - LRK53_RS00470 0.77 +0.2 103,956 - LRK53_RS00470 0.77 -1.2 103,956 - LRK53_RS00470 0.77 -0.3 103,956 - LRK53_RS00470 0.77 -0.6 103,956 - LRK53_RS00470 0.77 -1.0 103,956 - LRK53_RS00470 0.77 -0.3 103,956 - LRK53_RS00470 0.77 -2.1 103,956 - LRK53_RS00470 0.77 -1.6 104,045 + LRK53_RS00470 0.87 -1.6 104,045 + LRK53_RS00470 0.87 +0.7 104,045 + LRK53_RS00470 0.87 +1.3 104,045 + LRK53_RS00470 0.87 -0.3 104,046 - LRK53_RS00470 0.87 -1.9 104,046 - LRK53_RS00470 0.87 -1.1 104,046 - LRK53_RS00470 0.87 +0.3 104,117 + -0.5 104,117 + -0.2 104,117 + -0.8 104,117 + -1.0 104,117 + -1.4 104,117 + -1.1 104,117 + -0.7 104,117 + +0.7 104,117 + +0.0 104,118 - -1.0 104,118 - -1.4 104,118 - +1.1 104,118 - -1.3 104,118 - -0.5 104,118 - +0.7 104,150 + +0.5 104,150 + +1.8 104,151 - +0.9 104,151 - -0.1 104,151 - +0.2 104,290 + LRK53_RS00475 0.11 -1.2 104,290 + LRK53_RS00475 0.11 +0.2 104,290 + LRK53_RS00475 0.11 -0.2 104,290 + LRK53_RS00475 0.11 +1.2 104,290 + LRK53_RS00475 0.11 +1.3 104,290 + LRK53_RS00475 0.11 +1.8 104,290 + LRK53_RS00475 0.11 +0.2 104,291 - LRK53_RS00475 0.11 -0.2 104,291 - LRK53_RS00475 0.11 -0.8 104,291 - LRK53_RS00475 0.11 +0.1 104,291 - LRK53_RS00475 0.11 -0.9 104,849 - LRK53_RS00475 0.60 +0.2 104,866 + LRK53_RS00475 0.61 +0.3 104,866 + LRK53_RS00475 0.61 -0.8 104,866 + LRK53_RS00475 0.61 +0.1 104,866 + LRK53_RS00475 0.61 -1.8 104,867 - LRK53_RS00475 0.61 -0.3 104,867 - LRK53_RS00475 0.61 -0.4 104,867 - LRK53_RS00475 0.61 -0.7 104,867 - LRK53_RS00475 0.61 -1.4 104,867 - LRK53_RS00475 0.61 -0.6 104,867 - LRK53_RS00475 0.61 -0.1
Or see this region's nucleotide sequence