Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00145 and LRK53_RS00150 are separated by 10 nucleotides LRK53_RS00150 and LRK53_RS00155 overlap by 4 nucleotides LRK53_RS00155 and LRK53_RS00160 are separated by 101 nucleotides LRK53_RS00160 and LRK53_RS00165 are separated by 103 nucleotides LRK53_RS00165 and LRK53_RS00170 overlap by 4 nucleotides
LRK53_RS00145: LRK53_RS00145 - DJ-1/PfpI family protein, at 40,289 to 40,900
_RS00145
LRK53_RS00150: LRK53_RS00150 - hypothetical protein, at 40,911 to 41,099
_RS00150
LRK53_RS00155: LRK53_RS00155 - GFA family protein, at 41,096 to 41,500
_RS00155
LRK53_RS00160: LRK53_RS00160 - YafY family transcriptional regulator, at 41,602 to 42,306
_RS00160
LRK53_RS00165: LRK53_RS00165 - chromosome partitioning protein ParB, at 42,410 to 43,024
_RS00165
LRK53_RS00170: LRK53_RS00170 - SulP family inorganic anion transporter, at 43,021 to 44,682
_RS00170
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.688 kb on + strand, within LRK53_RS00145 at 40.706 kb on + strand, within LRK53_RS00145 at 40.706 kb on + strand, within LRK53_RS00145 at 40.706 kb on + strand, within LRK53_RS00145 at 40.706 kb on + strand, within LRK53_RS00145 at 40.706 kb on + strand, within LRK53_RS00145 at 40.808 kb on + strand, within LRK53_RS00145 at 40.808 kb on + strand, within LRK53_RS00145 at 40.808 kb on + strand, within LRK53_RS00145 at 40.808 kb on + strand, within LRK53_RS00145 at 40.808 kb on + strand, within LRK53_RS00145 at 40.808 kb on + strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.809 kb on - strand, within LRK53_RS00145 at 40.944 kb on + strand, within LRK53_RS00150 at 40.957 kb on - strand, within LRK53_RS00150 at 40.957 kb on - strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.986 kb on + strand, within LRK53_RS00150 at 40.987 kb on - strand, within LRK53_RS00150 at 40.987 kb on - strand, within LRK53_RS00150 at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.108 kb on + strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.109 kb on - strand at 41.136 kb on + strand at 41.136 kb on + strand at 41.136 kb on + strand at 41.136 kb on + strand at 41.141 kb on + strand, within LRK53_RS00155 at 41.142 kb on - strand, within LRK53_RS00155 at 41.276 kb on + strand, within LRK53_RS00155 at 41.276 kb on + strand, within LRK53_RS00155 at 41.276 kb on + strand, within LRK53_RS00155 at 41.277 kb on - strand, within LRK53_RS00155 at 41.372 kb on + strand, within LRK53_RS00155 at 41.372 kb on + strand, within LRK53_RS00155 at 41.372 kb on + strand, within LRK53_RS00155 at 41.372 kb on + strand, within LRK53_RS00155 at 41.372 kb on + strand, within LRK53_RS00155 at 41.372 kb on + strand, within LRK53_RS00155 at 41.373 kb on - strand, within LRK53_RS00155 at 41.373 kb on - strand, within LRK53_RS00155 at 41.373 kb on - strand, within LRK53_RS00155 at 41.373 kb on - strand, within LRK53_RS00155 at 41.373 kb on - strand, within LRK53_RS00155 at 41.546 kb on + strand at 41.546 kb on + strand at 41.547 kb on - strand at 41.547 kb on - strand at 41.593 kb on + strand at 41.593 kb on + strand at 41.593 kb on + strand at 41.593 kb on + strand at 41.594 kb on - strand at 41.713 kb on + strand, within LRK53_RS00160 at 41.714 kb on - strand, within LRK53_RS00160 at 41.776 kb on + strand, within LRK53_RS00160 at 41.776 kb on + strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.071 kb on - strand, within LRK53_RS00160 at 42.071 kb on - strand, within LRK53_RS00160 at 42.265 kb on + strand at 42.265 kb on + strand at 42.265 kb on + strand at 42.265 kb on + strand at 42.266 kb on - strand at 42.266 kb on - strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.349 kb on - strand at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.743 kb on + strand, within LRK53_RS00165 at 42.743 kb on + strand, within LRK53_RS00165 at 42.770 kb on + strand, within LRK53_RS00165 at 42.770 kb on + strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.903 kb on - strand, within LRK53_RS00165 at 42.992 kb on + strand at 42.992 kb on + strand at 42.993 kb on - strand at 42.993 kb on - strand at 42.993 kb on - strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.127 kb on - strand at 43.127 kb on - strand at 43.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 40,688 + LRK53_RS00145 0.65 -0.3 40,706 + LRK53_RS00145 0.68 -0.2 40,706 + LRK53_RS00145 0.68 +0.3 40,706 + LRK53_RS00145 0.68 -0.0 40,706 + LRK53_RS00145 0.68 -1.5 40,706 + LRK53_RS00145 0.68 -3.7 40,808 + LRK53_RS00145 0.85 -1.5 40,808 + LRK53_RS00145 0.85 -2.5 40,808 + LRK53_RS00145 0.85 +0.2 40,808 + LRK53_RS00145 0.85 -0.9 40,808 + LRK53_RS00145 0.85 -1.1 40,808 + LRK53_RS00145 0.85 +0.8 40,809 - LRK53_RS00145 0.85 -2.1 40,809 - LRK53_RS00145 0.85 -1.4 40,809 - LRK53_RS00145 0.85 -1.5 40,809 - LRK53_RS00145 0.85 -0.9 40,809 - LRK53_RS00145 0.85 +0.6 40,809 - LRK53_RS00145 0.85 -0.3 40,809 - LRK53_RS00145 0.85 -1.0 40,809 - LRK53_RS00145 0.85 -0.3 40,809 - LRK53_RS00145 0.85 -0.4 40,944 + LRK53_RS00150 0.17 -0.9 40,957 - LRK53_RS00150 0.24 +0.8 40,957 - LRK53_RS00150 0.24 -2.3 40,986 + LRK53_RS00150 0.40 +0.5 40,986 + LRK53_RS00150 0.40 +0.3 40,986 + LRK53_RS00150 0.40 -2.3 40,986 + LRK53_RS00150 0.40 -0.6 40,986 + LRK53_RS00150 0.40 -0.2 40,986 + LRK53_RS00150 0.40 -0.3 40,986 + LRK53_RS00150 0.40 -0.4 40,986 + LRK53_RS00150 0.40 -0.7 40,986 + LRK53_RS00150 0.40 -1.1 40,987 - LRK53_RS00150 0.40 +1.3 40,987 - LRK53_RS00150 0.40 -0.8 41,108 + +0.5 41,108 + -0.8 41,108 + +0.2 41,108 + +1.0 41,108 + -0.4 41,108 + -0.6 41,108 + +1.2 41,108 + -0.2 41,108 + +1.0 41,108 + -1.3 41,108 + -0.3 41,108 + -1.4 41,108 + -0.5 41,108 + -1.6 41,108 + -0.2 41,109 - +0.6 41,109 - -0.3 41,109 - -2.0 41,109 - +0.6 41,109 - -0.2 41,109 - +0.1 41,109 - +0.6 41,109 - +0.5 41,136 + -2.2 41,136 + -0.8 41,136 + -1.8 41,136 + -2.1 41,141 + LRK53_RS00155 0.11 -0.2 41,142 - LRK53_RS00155 0.11 +0.2 41,276 + LRK53_RS00155 0.44 +0.4 41,276 + LRK53_RS00155 0.44 -0.3 41,276 + LRK53_RS00155 0.44 -1.2 41,277 - LRK53_RS00155 0.45 -0.5 41,372 + LRK53_RS00155 0.68 -1.2 41,372 + LRK53_RS00155 0.68 -0.9 41,372 + LRK53_RS00155 0.68 -1.3 41,372 + LRK53_RS00155 0.68 +0.0 41,372 + LRK53_RS00155 0.68 -1.4 41,372 + LRK53_RS00155 0.68 -1.4 41,373 - LRK53_RS00155 0.68 +1.0 41,373 - LRK53_RS00155 0.68 +0.4 41,373 - LRK53_RS00155 0.68 +0.8 41,373 - LRK53_RS00155 0.68 +0.8 41,373 - LRK53_RS00155 0.68 -3.0 41,546 + -1.4 41,546 + +0.6 41,547 - -0.4 41,547 - -0.9 41,593 + +0.1 41,593 + +0.2 41,593 + -0.4 41,593 + -1.2 41,594 - -0.4 41,713 + LRK53_RS00160 0.16 -0.6 41,714 - LRK53_RS00160 0.16 -0.3 41,776 + LRK53_RS00160 0.25 +1.2 41,776 + LRK53_RS00160 0.25 -1.9 41,777 - LRK53_RS00160 0.25 -0.9 41,777 - LRK53_RS00160 0.25 -0.2 41,777 - LRK53_RS00160 0.25 -1.1 41,777 - LRK53_RS00160 0.25 -0.4 41,777 - LRK53_RS00160 0.25 +0.2 41,971 + LRK53_RS00160 0.52 +0.1 41,971 + LRK53_RS00160 0.52 +0.4 41,971 + LRK53_RS00160 0.52 -1.4 41,971 + LRK53_RS00160 0.52 -1.5 41,971 + LRK53_RS00160 0.52 +1.2 41,971 + LRK53_RS00160 0.52 -0.5 41,972 - LRK53_RS00160 0.52 +1.4 41,972 - LRK53_RS00160 0.52 -0.7 41,972 - LRK53_RS00160 0.52 -2.1 41,972 - LRK53_RS00160 0.52 -1.2 41,972 - LRK53_RS00160 0.52 -0.6 41,972 - LRK53_RS00160 0.52 -0.7 41,995 + LRK53_RS00160 0.56 -1.4 41,995 + LRK53_RS00160 0.56 +0.5 41,995 + LRK53_RS00160 0.56 -0.0 41,995 + LRK53_RS00160 0.56 +0.4 41,996 - LRK53_RS00160 0.56 -1.5 41,996 - LRK53_RS00160 0.56 -0.3 41,996 - LRK53_RS00160 0.56 +1.2 41,996 - LRK53_RS00160 0.56 -1.6 41,996 - LRK53_RS00160 0.56 -2.2 41,996 - LRK53_RS00160 0.56 +0.4 42,070 + LRK53_RS00160 0.66 -0.0 42,070 + LRK53_RS00160 0.66 -1.9 42,070 + LRK53_RS00160 0.66 -0.7 42,070 + LRK53_RS00160 0.66 -0.8 42,071 - LRK53_RS00160 0.67 +0.4 42,071 - LRK53_RS00160 0.67 -0.8 42,265 + -0.2 42,265 + -1.3 42,265 + -0.2 42,265 + -1.7 42,266 - -0.0 42,266 - -1.0 42,289 + -1.2 42,289 + -0.3 42,289 + +0.2 42,289 + -0.8 42,289 + -0.7 42,289 + -1.3 42,289 + -0.7 42,290 - -2.1 42,290 - -0.9 42,290 - -1.5 42,290 - -0.2 42,290 - -1.5 42,290 - -1.0 42,290 - +0.4 42,304 + -0.7 42,304 + -0.9 42,304 + +2.4 42,304 + -0.1 42,305 - -0.2 42,305 - +0.1 42,305 - -0.6 42,305 - +0.4 42,305 - -2.1 42,349 - -0.5 42,599 + LRK53_RS00165 0.31 -0.0 42,599 + LRK53_RS00165 0.31 -3.1 42,599 + LRK53_RS00165 0.31 -0.2 42,599 + LRK53_RS00165 0.31 -0.4 42,599 + LRK53_RS00165 0.31 -0.6 42,599 + LRK53_RS00165 0.31 -1.6 42,599 + LRK53_RS00165 0.31 -1.0 42,599 + LRK53_RS00165 0.31 -0.9 42,599 + LRK53_RS00165 0.31 -2.6 42,600 - LRK53_RS00165 0.31 +1.0 42,600 - LRK53_RS00165 0.31 -0.4 42,600 - LRK53_RS00165 0.31 -0.7 42,600 - LRK53_RS00165 0.31 +0.6 42,600 - LRK53_RS00165 0.31 -0.4 42,600 - LRK53_RS00165 0.31 -1.4 42,600 - LRK53_RS00165 0.31 -0.7 42,600 - LRK53_RS00165 0.31 -1.6 42,600 - LRK53_RS00165 0.31 -1.5 42,600 - LRK53_RS00165 0.31 -1.0 42,743 + LRK53_RS00165 0.54 -0.4 42,743 + LRK53_RS00165 0.54 -1.3 42,770 + LRK53_RS00165 0.59 -0.6 42,770 + LRK53_RS00165 0.59 -3.1 42,771 - LRK53_RS00165 0.59 -0.6 42,771 - LRK53_RS00165 0.59 -0.0 42,771 - LRK53_RS00165 0.59 -0.8 42,903 - LRK53_RS00165 0.80 -0.4 42,992 + -0.5 42,992 + -1.6 42,993 - -0.2 42,993 - +0.1 42,993 - -1.2 43,126 + -0.3 43,126 + +0.4 43,126 + +0.7 43,126 + -1.1 43,127 - -0.2 43,127 - -1.4 43,127 - +0.7
Or see this region's nucleotide sequence