Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44390

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44380 and QEN71_RS44385 are separated by 253 nucleotidesQEN71_RS44385 and QEN71_RS44390 are separated by 139 nucleotidesQEN71_RS44390 and QEN71_RS44395 overlap by 4 nucleotides QEN71_RS44380: QEN71_RS44380 - IS3 family transposase, at 350,107 to 350,828 _RS44380 QEN71_RS44385: QEN71_RS44385 - integrase, at 351,082 to 351,165 _RS44385 QEN71_RS44390: QEN71_RS44390 - site-specific integrase, at 351,305 to 352,315 _RS44390 QEN71_RS44395: QEN71_RS44395 - tyrosine-type recombinase/integrase, at 352,312 to 353,244 _RS44395 Position (kb) 351 352 353Strain fitness (log2 ratio) -2 -1 0 1 2at 350.931 kb on - strandat 351.038 kb on + strandat 351.038 kb on + strandat 351.053 kb on + strandat 351.053 kb on + strandat 351.054 kb on - strandat 351.063 kb on + strandat 351.064 kb on - strandat 351.153 kb on + strand, within QEN71_RS44385at 351.163 kb on + strandat 351.166 kb on + strandat 351.230 kb on + strandat 351.240 kb on - strandat 351.240 kb on - strandat 351.244 kb on - strandat 351.429 kb on + strand, within QEN71_RS44390at 351.429 kb on + strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.430 kb on - strand, within QEN71_RS44390at 351.542 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.588 kb on + strand, within QEN71_RS44390at 351.589 kb on - strand, within QEN71_RS44390at 351.746 kb on + strand, within QEN71_RS44390at 351.747 kb on - strand, within QEN71_RS44390at 351.788 kb on - strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.849 kb on + strand, within QEN71_RS44390at 351.850 kb on - strand, within QEN71_RS44390at 351.854 kb on + strand, within QEN71_RS44390at 351.854 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.892 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.896 kb on + strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.897 kb on - strand, within QEN71_RS44390at 351.898 kb on - strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 351.927 kb on + strand, within QEN71_RS44390at 352.016 kb on + strand, within QEN71_RS44390at 352.028 kb on + strand, within QEN71_RS44390at 352.029 kb on - strand, within QEN71_RS44390at 352.134 kb on - strand, within QEN71_RS44390at 352.320 kb on + strandat 352.320 kb on + strandat 352.320 kb on + strandat 352.320 kb on + strandat 352.321 kb on - strandat 352.321 kb on - strandat 352.321 kb on - strandat 352.321 kb on - strandat 352.359 kb on + strandat 352.360 kb on - strandat 352.381 kb on + strandat 352.382 kb on - strandat 352.403 kb on + strandat 352.404 kb on - strandat 352.439 kb on + strand, within QEN71_RS44395at 352.439 kb on + strand, within QEN71_RS44395at 352.440 kb on - strand, within QEN71_RS44395at 352.605 kb on - strand, within QEN71_RS44395at 352.652 kb on + strand, within QEN71_RS44395at 352.652 kb on + strand, within QEN71_RS44395at 352.688 kb on + strand, within QEN71_RS44395at 352.688 kb on + strand, within QEN71_RS44395at 352.689 kb on - strand, within QEN71_RS44395at 352.706 kb on - strand, within QEN71_RS44395at 352.838 kb on + strand, within QEN71_RS44395at 352.838 kb on + strand, within QEN71_RS44395at 352.838 kb on + strand, within QEN71_RS44395at 352.974 kb on - strand, within QEN71_RS44395at 352.979 kb on - strand, within QEN71_RS44395at 353.059 kb on - strand, within QEN71_RS44395at 353.059 kb on - strand, within QEN71_RS44395at 353.066 kb on + strand, within QEN71_RS44395at 353.067 kb on - strand, within QEN71_RS44395at 353.287 kb on - strandat 353.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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350,931 - -1.7
351,038 + -0.9
351,038 + +0.7
351,053 + +0.7
351,053 + -0.4
351,054 - -0.7
351,063 + -1.4
351,064 - -1.3
351,153 + QEN71_RS44385 0.85 +0.5
351,163 + -1.3
351,166 + +1.7
351,230 + -0.3
351,240 - -1.6
351,240 - -1.7
351,244 - -0.7
351,429 + QEN71_RS44390 0.12 -2.0
351,429 + QEN71_RS44390 0.12 -1.8
351,430 - QEN71_RS44390 0.12 -0.4
351,430 - QEN71_RS44390 0.12 -1.3
351,430 - QEN71_RS44390 0.12 -0.4
351,430 - QEN71_RS44390 0.12 +2.0
351,430 - QEN71_RS44390 0.12 -1.4
351,542 + QEN71_RS44390 0.23 -0.5
351,588 + QEN71_RS44390 0.28 -0.7
351,588 + QEN71_RS44390 0.28 +0.1
351,588 + QEN71_RS44390 0.28 -0.1
351,589 - QEN71_RS44390 0.28 -0.5
351,746 + QEN71_RS44390 0.44 +0.6
351,747 - QEN71_RS44390 0.44 +0.2
351,788 - QEN71_RS44390 0.48 -0.3
351,849 + QEN71_RS44390 0.54 -1.6
351,849 + QEN71_RS44390 0.54 -0.1
351,849 + QEN71_RS44390 0.54 +0.5
351,849 + QEN71_RS44390 0.54 -0.8
351,849 + QEN71_RS44390 0.54 -0.3
351,850 - QEN71_RS44390 0.54 -1.0
351,854 + QEN71_RS44390 0.54 -0.2
351,854 + QEN71_RS44390 0.54 -1.3
351,892 + QEN71_RS44390 0.58 -0.3
351,892 + QEN71_RS44390 0.58 -0.8
351,892 + QEN71_RS44390 0.58 -1.8
351,892 + QEN71_RS44390 0.58 -1.1
351,896 + QEN71_RS44390 0.58 -2.2
351,896 + QEN71_RS44390 0.58 -0.3
351,896 + QEN71_RS44390 0.58 +2.7
351,896 + QEN71_RS44390 0.58 +0.2
351,897 - QEN71_RS44390 0.59 -0.1
351,897 - QEN71_RS44390 0.59 -1.4
351,897 - QEN71_RS44390 0.59 -1.2
351,897 - QEN71_RS44390 0.59 +0.6
351,897 - QEN71_RS44390 0.59 +2.0
351,897 - QEN71_RS44390 0.59 +0.9
351,898 - QEN71_RS44390 0.59 -1.4
351,927 + QEN71_RS44390 0.62 -1.6
351,927 + QEN71_RS44390 0.62 -0.4
351,927 + QEN71_RS44390 0.62 +0.0
351,927 + QEN71_RS44390 0.62 +0.5
352,016 + QEN71_RS44390 0.70 -2.4
352,028 + QEN71_RS44390 0.72 -0.3
352,029 - QEN71_RS44390 0.72 +0.0
352,134 - QEN71_RS44390 0.82 -0.8
352,320 + -1.3
352,320 + +0.3
352,320 + -0.3
352,320 + -0.7
352,321 - +0.9
352,321 - -0.7
352,321 - -0.9
352,321 - +1.0
352,359 + -1.0
352,360 - -0.3
352,381 + +0.0
352,382 - -1.3
352,403 + -0.0
352,404 - -0.3
352,439 + QEN71_RS44395 0.14 -0.1
352,439 + QEN71_RS44395 0.14 -0.4
352,440 - QEN71_RS44395 0.14 -0.2
352,605 - QEN71_RS44395 0.31 +0.2
352,652 + QEN71_RS44395 0.36 +0.2
352,652 + QEN71_RS44395 0.36 -1.7
352,688 + QEN71_RS44395 0.40 +1.1
352,688 + QEN71_RS44395 0.40 +0.2
352,689 - QEN71_RS44395 0.40 -0.6
352,706 - QEN71_RS44395 0.42 +0.2
352,838 + QEN71_RS44395 0.56 -2.2
352,838 + QEN71_RS44395 0.56 -1.4
352,838 + QEN71_RS44395 0.56 -0.5
352,974 - QEN71_RS44395 0.71 -0.6
352,979 - QEN71_RS44395 0.71 -0.1
353,059 - QEN71_RS44395 0.80 -0.4
353,059 - QEN71_RS44395 0.80 -0.6
353,066 + QEN71_RS44395 0.81 +0.6
353,067 - QEN71_RS44395 0.81 -0.1
353,287 - -1.0
353,287 - -1.4

Or see this region's nucleotide sequence