Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS43860

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS43855 and QEN71_RS43860 overlap by 4 nucleotidesQEN71_RS43860 and QEN71_RS43865 are separated by 3 nucleotides QEN71_RS43855: QEN71_RS43855 - tyrosine-type recombinase/integrase, at 248,995 to 250,914 _RS43855 QEN71_RS43860: QEN71_RS43860 - TetR family transcriptional regulator, at 250,911 to 251,411 _RS43860 QEN71_RS43865: QEN71_RS43865 - DUF5131 family protein, at 251,415 to 252,422 _RS43865 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 249.979 kb on + strand, within QEN71_RS43855at 249.980 kb on - strand, within QEN71_RS43855at 249.980 kb on - strand, within QEN71_RS43855at 249.981 kb on + strand, within QEN71_RS43855at 249.982 kb on - strand, within QEN71_RS43855at 250.013 kb on + strand, within QEN71_RS43855at 250.014 kb on - strand, within QEN71_RS43855at 250.057 kb on - strand, within QEN71_RS43855at 250.057 kb on - strand, within QEN71_RS43855at 250.068 kb on + strand, within QEN71_RS43855at 250.081 kb on + strand, within QEN71_RS43855at 250.081 kb on + strand, within QEN71_RS43855at 250.081 kb on + strand, within QEN71_RS43855at 250.082 kb on - strand, within QEN71_RS43855at 250.082 kb on - strand, within QEN71_RS43855at 250.339 kb on + strand, within QEN71_RS43855at 250.339 kb on + strand, within QEN71_RS43855at 250.340 kb on - strand, within QEN71_RS43855at 250.340 kb on - strand, within QEN71_RS43855at 250.368 kb on - strand, within QEN71_RS43855at 250.368 kb on - strand, within QEN71_RS43855at 250.380 kb on + strand, within QEN71_RS43855at 250.380 kb on + strand, within QEN71_RS43855at 250.381 kb on - strand, within QEN71_RS43855at 250.381 kb on - strand, within QEN71_RS43855at 250.429 kb on + strand, within QEN71_RS43855at 250.429 kb on + strand, within QEN71_RS43855at 250.430 kb on - strand, within QEN71_RS43855at 250.430 kb on - strand, within QEN71_RS43855at 250.528 kb on + strand, within QEN71_RS43855at 250.529 kb on - strand, within QEN71_RS43855at 250.548 kb on + strand, within QEN71_RS43855at 250.657 kb on - strand, within QEN71_RS43855at 250.842 kb on + strandat 250.862 kb on + strandat 250.862 kb on + strandat 250.863 kb on - strandat 250.863 kb on - strandat 250.863 kb on - strandat 250.863 kb on - strandat 250.967 kb on + strand, within QEN71_RS43860at 250.967 kb on + strand, within QEN71_RS43860at 250.968 kb on - strand, within QEN71_RS43860at 251.103 kb on + strand, within QEN71_RS43860at 251.103 kb on + strand, within QEN71_RS43860at 251.269 kb on + strand, within QEN71_RS43860at 251.270 kb on - strand, within QEN71_RS43860at 251.275 kb on - strand, within QEN71_RS43860at 251.291 kb on + strand, within QEN71_RS43860at 251.413 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.414 kb on + strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.415 kb on - strandat 251.470 kb on - strandat 251.512 kb on + strandat 251.512 kb on + strandat 251.517 kb on - strand, within QEN71_RS43865at 251.517 kb on - strand, within QEN71_RS43865at 251.565 kb on + strand, within QEN71_RS43865at 251.566 kb on - strand, within QEN71_RS43865at 251.566 kb on - strand, within QEN71_RS43865at 251.566 kb on - strand, within QEN71_RS43865at 251.634 kb on - strand, within QEN71_RS43865at 251.672 kb on + strand, within QEN71_RS43865at 251.673 kb on - strand, within QEN71_RS43865at 251.758 kb on + strand, within QEN71_RS43865at 251.759 kb on - strand, within QEN71_RS43865at 251.911 kb on + strand, within QEN71_RS43865at 251.911 kb on + strand, within QEN71_RS43865at 251.911 kb on + strand, within QEN71_RS43865at 251.911 kb on + strand, within QEN71_RS43865at 251.912 kb on - strand, within QEN71_RS43865at 251.912 kb on - strand, within QEN71_RS43865at 251.912 kb on - strand, within QEN71_RS43865at 252.104 kb on + strand, within QEN71_RS43865at 252.105 kb on - strand, within QEN71_RS43865at 252.108 kb on + strand, within QEN71_RS43865at 252.108 kb on + strand, within QEN71_RS43865at 252.109 kb on - strand, within QEN71_RS43865at 252.109 kb on - strand, within QEN71_RS43865at 252.109 kb on - strand, within QEN71_RS43865at 252.109 kb on - strand, within QEN71_RS43865at 252.120 kb on + strand, within QEN71_RS43865at 252.155 kb on + strand, within QEN71_RS43865at 252.155 kb on + strand, within QEN71_RS43865at 252.155 kb on + strand, within QEN71_RS43865at 252.156 kb on - strand, within QEN71_RS43865at 252.254 kb on + strand, within QEN71_RS43865at 252.254 kb on + strand, within QEN71_RS43865at 252.255 kb on - strand, within QEN71_RS43865at 252.255 kb on - strand, within QEN71_RS43865at 252.255 kb on - strand, within QEN71_RS43865at 252.255 kb on - strand, within QEN71_RS43865at 252.255 kb on - strand, within QEN71_RS43865at 252.334 kb on + strandat 252.334 kb on + strandat 252.335 kb on - strandat 252.335 kb on - strandat 252.335 kb on - strandat 252.335 kb on - strandat 252.335 kb on - strandat 252.406 kb on + strandat 252.407 kb on - strandat 252.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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249,979 + QEN71_RS43855 0.51 -0.8
249,980 - QEN71_RS43855 0.51 +0.8
249,980 - QEN71_RS43855 0.51 -2.3
249,981 + QEN71_RS43855 0.51 +0.0
249,982 - QEN71_RS43855 0.51 -0.4
250,013 + QEN71_RS43855 0.53 -1.6
250,014 - QEN71_RS43855 0.53 -1.9
250,057 - QEN71_RS43855 0.55 +0.3
250,057 - QEN71_RS43855 0.55 +1.0
250,068 + QEN71_RS43855 0.56 +0.6
250,081 + QEN71_RS43855 0.57 +0.3
250,081 + QEN71_RS43855 0.57 -0.3
250,081 + QEN71_RS43855 0.57 -0.3
250,082 - QEN71_RS43855 0.57 -1.3
250,082 - QEN71_RS43855 0.57 +0.3
250,339 + QEN71_RS43855 0.70 +0.9
250,339 + QEN71_RS43855 0.70 +0.2
250,340 - QEN71_RS43855 0.70 -1.6
250,340 - QEN71_RS43855 0.70 -0.3
250,368 - QEN71_RS43855 0.72 -2.5
250,368 - QEN71_RS43855 0.72 +0.7
250,380 + QEN71_RS43855 0.72 +0.3
250,380 + QEN71_RS43855 0.72 +1.0
250,381 - QEN71_RS43855 0.72 +1.2
250,381 - QEN71_RS43855 0.72 -1.0
250,429 + QEN71_RS43855 0.75 +0.2
250,429 + QEN71_RS43855 0.75 +0.7
250,430 - QEN71_RS43855 0.75 -0.6
250,430 - QEN71_RS43855 0.75 +0.0
250,528 + QEN71_RS43855 0.80 +0.0
250,529 - QEN71_RS43855 0.80 -0.8
250,548 + QEN71_RS43855 0.81 -0.0
250,657 - QEN71_RS43855 0.87 +0.9
250,842 + -2.4
250,862 + +0.7
250,862 + +0.8
250,863 - -0.1
250,863 - -0.1
250,863 - -0.5
250,863 - +0.2
250,967 + QEN71_RS43860 0.11 -1.6
250,967 + QEN71_RS43860 0.11 +0.2
250,968 - QEN71_RS43860 0.11 +1.3
251,103 + QEN71_RS43860 0.38 +0.7
251,103 + QEN71_RS43860 0.38 -1.2
251,269 + QEN71_RS43860 0.71 -0.4
251,270 - QEN71_RS43860 0.72 +0.7
251,275 - QEN71_RS43860 0.73 +1.2
251,291 + QEN71_RS43860 0.76 -0.7
251,413 + -0.6
251,414 + -1.2
251,414 + +0.9
251,414 + +0.1
251,414 + +1.3
251,414 + -0.3
251,414 + +0.3
251,414 + -0.1
251,414 + -0.8
251,414 + +0.6
251,414 + +0.2
251,414 + +0.0
251,415 - -0.7
251,415 - +0.5
251,415 - +0.2
251,415 - +0.2
251,415 - -2.6
251,415 - -1.0
251,415 - -0.6
251,415 - -0.3
251,415 - -0.1
251,415 - +0.2
251,415 - -1.5
251,415 - -0.8
251,470 - +1.7
251,512 + +0.4
251,512 + -0.1
251,517 - QEN71_RS43865 0.10 -0.3
251,517 - QEN71_RS43865 0.10 +0.8
251,565 + QEN71_RS43865 0.15 +0.3
251,566 - QEN71_RS43865 0.15 -0.4
251,566 - QEN71_RS43865 0.15 -0.1
251,566 - QEN71_RS43865 0.15 +0.1
251,634 - QEN71_RS43865 0.22 +0.5
251,672 + QEN71_RS43865 0.25 +0.2
251,673 - QEN71_RS43865 0.26 -0.8
251,758 + QEN71_RS43865 0.34 -0.2
251,759 - QEN71_RS43865 0.34 +0.0
251,911 + QEN71_RS43865 0.49 -0.6
251,911 + QEN71_RS43865 0.49 -1.4
251,911 + QEN71_RS43865 0.49 -0.9
251,911 + QEN71_RS43865 0.49 +0.2
251,912 - QEN71_RS43865 0.49 +0.3
251,912 - QEN71_RS43865 0.49 +0.9
251,912 - QEN71_RS43865 0.49 +0.6
252,104 + QEN71_RS43865 0.68 +0.4
252,105 - QEN71_RS43865 0.68 +0.3
252,108 + QEN71_RS43865 0.69 +0.6
252,108 + QEN71_RS43865 0.69 -0.2
252,109 - QEN71_RS43865 0.69 -0.1
252,109 - QEN71_RS43865 0.69 +2.3
252,109 - QEN71_RS43865 0.69 -1.1
252,109 - QEN71_RS43865 0.69 -3.2
252,120 + QEN71_RS43865 0.70 -0.1
252,155 + QEN71_RS43865 0.73 -0.7
252,155 + QEN71_RS43865 0.73 +0.3
252,155 + QEN71_RS43865 0.73 -2.4
252,156 - QEN71_RS43865 0.74 -0.1
252,254 + QEN71_RS43865 0.83 -0.6
252,254 + QEN71_RS43865 0.83 +0.3
252,255 - QEN71_RS43865 0.83 -0.0
252,255 - QEN71_RS43865 0.83 -0.3
252,255 - QEN71_RS43865 0.83 +0.7
252,255 - QEN71_RS43865 0.83 +0.7
252,255 - QEN71_RS43865 0.83 -0.4
252,334 + -0.0
252,334 + -0.3
252,335 - +1.0
252,335 - -0.7
252,335 - +0.7
252,335 - -1.4
252,335 - +0.3
252,406 + +2.3
252,407 - +0.0
252,407 - -0.2

Or see this region's nucleotide sequence