Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43035 and QEN71_RS43040 are separated by 87 nucleotides QEN71_RS43040 and QEN71_RS43045 overlap by 1 nucleotides QEN71_RS43045 and QEN71_RS43050 are separated by 149 nucleotides QEN71_RS43050 and QEN71_RS43055 are separated by 144 nucleotides
QEN71_RS43035: QEN71_RS43035 - IS66 family transposase, at 86,803 to 88,391
_RS43035
QEN71_RS43040: QEN71_RS43040 - IS66 family insertion sequence element accessory protein TnpB, at 88,479 to 88,832
_RS43040
QEN71_RS43045: QEN71_RS43045 - transposase, at 88,832 to 89,299
_RS43045
QEN71_RS43050: QEN71_RS43050 - DUF4158 domain-containing protein, at 89,449 to 89,955
_RS43050
QEN71_RS43055: QEN71_RS43055 - CBS domain-containing protein, at 90,100 to 90,309
_RS43055
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 87.878 kb on + strand, within QEN71_RS43035 at 87.878 kb on + strand, within QEN71_RS43035 at 87.879 kb on - strand, within QEN71_RS43035 at 87.924 kb on + strand, within QEN71_RS43035 at 87.924 kb on + strand, within QEN71_RS43035 at 87.924 kb on + strand, within QEN71_RS43035 at 87.925 kb on - strand, within QEN71_RS43035 at 87.925 kb on - strand, within QEN71_RS43035 at 87.925 kb on - strand, within QEN71_RS43035 at 87.925 kb on - strand, within QEN71_RS43035 at 87.967 kb on + strand, within QEN71_RS43035 at 87.967 kb on + strand, within QEN71_RS43035 at 87.997 kb on + strand, within QEN71_RS43035 at 87.997 kb on + strand, within QEN71_RS43035 at 87.997 kb on + strand, within QEN71_RS43035 at 87.997 kb on + strand, within QEN71_RS43035 at 87.997 kb on + strand, within QEN71_RS43035 at 87.997 kb on + strand, within QEN71_RS43035 at 88.028 kb on + strand, within QEN71_RS43035 at 88.028 kb on + strand, within QEN71_RS43035 at 88.028 kb on + strand, within QEN71_RS43035 at 88.028 kb on + strand, within QEN71_RS43035 at 88.028 kb on + strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.029 kb on - strand, within QEN71_RS43035 at 88.053 kb on + strand, within QEN71_RS43035 at 88.053 kb on + strand, within QEN71_RS43035 at 88.054 kb on - strand, within QEN71_RS43035 at 88.116 kb on + strand, within QEN71_RS43035 at 88.116 kb on + strand, within QEN71_RS43035 at 88.117 kb on - strand, within QEN71_RS43035 at 88.152 kb on + strand, within QEN71_RS43035 at 88.153 kb on - strand, within QEN71_RS43035 at 88.153 kb on - strand, within QEN71_RS43035 at 88.153 kb on - strand, within QEN71_RS43035 at 88.153 kb on - strand, within QEN71_RS43035 at 88.153 kb on - strand, within QEN71_RS43035 at 88.323 kb on - strand at 88.323 kb on - strand at 88.343 kb on + strand at 88.343 kb on + strand at 88.343 kb on + strand at 88.343 kb on + strand at 88.343 kb on + strand at 88.344 kb on - strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.345 kb on + strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.346 kb on - strand at 88.365 kb on + strand at 88.439 kb on + strand at 88.439 kb on + strand at 88.440 kb on - strand at 88.440 kb on - strand at 88.440 kb on - strand at 88.476 kb on + strand at 88.545 kb on + strand, within QEN71_RS43040 at 88.629 kb on + strand, within QEN71_RS43040 at 88.629 kb on + strand, within QEN71_RS43040 at 88.657 kb on + strand, within QEN71_RS43040 at 88.658 kb on - strand, within QEN71_RS43040 at 88.702 kb on + strand, within QEN71_RS43040 at 88.703 kb on - strand, within QEN71_RS43040 at 88.703 kb on - strand, within QEN71_RS43040 at 88.703 kb on - strand, within QEN71_RS43040 at 88.703 kb on - strand, within QEN71_RS43040 at 88.703 kb on - strand, within QEN71_RS43040 at 88.979 kb on + strand, within QEN71_RS43045 at 88.979 kb on + strand, within QEN71_RS43045 at 88.979 kb on + strand, within QEN71_RS43045 at 88.980 kb on - strand, within QEN71_RS43045 at 88.980 kb on - strand, within QEN71_RS43045 at 88.980 kb on - strand, within QEN71_RS43045 at 88.980 kb on - strand, within QEN71_RS43045 at 88.980 kb on - strand, within QEN71_RS43045 at 88.980 kb on - strand, within QEN71_RS43045 at 88.994 kb on + strand, within QEN71_RS43045 at 88.994 kb on + strand, within QEN71_RS43045 at 88.995 kb on - strand, within QEN71_RS43045 at 88.995 kb on - strand, within QEN71_RS43045 at 88.995 kb on - strand, within QEN71_RS43045 at 89.252 kb on - strand, within QEN71_RS43045 at 89.252 kb on - strand, within QEN71_RS43045 at 89.360 kb on + strand at 89.360 kb on + strand at 89.360 kb on + strand at 89.360 kb on + strand at 89.360 kb on + strand at 89.360 kb on + strand at 89.361 kb on - strand at 89.361 kb on - strand at 89.361 kb on - strand at 89.361 kb on - strand at 89.381 kb on + strand at 89.416 kb on + strand at 89.417 kb on - strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.419 kb on + strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.420 kb on - strand at 89.518 kb on + strand, within QEN71_RS43050 at 89.518 kb on + strand, within QEN71_RS43050 at 89.518 kb on + strand, within QEN71_RS43050 at 89.518 kb on + strand, within QEN71_RS43050 at 89.518 kb on + strand, within QEN71_RS43050 at 89.518 kb on + strand, within QEN71_RS43050 at 89.518 kb on + strand, within QEN71_RS43050 at 89.519 kb on - strand, within QEN71_RS43050 at 89.519 kb on - strand, within QEN71_RS43050 at 89.519 kb on - strand, within QEN71_RS43050 at 89.519 kb on - strand, within QEN71_RS43050 at 89.519 kb on - strand, within QEN71_RS43050 at 89.519 kb on - strand, within QEN71_RS43050 at 89.580 kb on + strand, within QEN71_RS43050 at 89.580 kb on + strand, within QEN71_RS43050 at 89.580 kb on + strand, within QEN71_RS43050 at 89.581 kb on - strand, within QEN71_RS43050 at 89.581 kb on - strand, within QEN71_RS43050 at 89.581 kb on - strand, within QEN71_RS43050 at 89.581 kb on - strand, within QEN71_RS43050 at 89.581 kb on - strand, within QEN71_RS43050 at 89.625 kb on - strand, within QEN71_RS43050 at 89.673 kb on - strand, within QEN71_RS43050 at 89.673 kb on - strand, within QEN71_RS43050 at 89.729 kb on + strand, within QEN71_RS43050 at 89.729 kb on + strand, within QEN71_RS43050 at 89.773 kb on - strand, within QEN71_RS43050 at 89.773 kb on - strand, within QEN71_RS43050 at 89.773 kb on - strand, within QEN71_RS43050 at 89.879 kb on + strand, within QEN71_RS43050 at 89.880 kb on - strand, within QEN71_RS43050 at 89.933 kb on + strand at 89.934 kb on - strand at 89.983 kb on + strand at 89.983 kb on + strand at 89.983 kb on + strand at 89.984 kb on - strand at 89.984 kb on - strand at 89.984 kb on - strand at 89.984 kb on - strand at 89.987 kb on + strand at 89.987 kb on + strand at 89.987 kb on + strand at 89.988 kb on - strand at 89.988 kb on - strand at 89.988 kb on - strand at 90.047 kb on + strand at 90.047 kb on + strand at 90.047 kb on + strand at 90.047 kb on + strand at 90.047 kb on + strand at 90.047 kb on + strand at 90.048 kb on - strand at 90.048 kb on - strand at 90.048 kb on - strand at 90.048 kb on - strand at 90.051 kb on + strand at 90.051 kb on + strand at 90.052 kb on - strand at 90.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 87,878 + QEN71_RS43035 0.68 -1.2 87,878 + QEN71_RS43035 0.68 -0.3 87,879 - QEN71_RS43035 0.68 -0.8 87,924 + QEN71_RS43035 0.71 -1.3 87,924 + QEN71_RS43035 0.71 +0.3 87,924 + QEN71_RS43035 0.71 +0.4 87,925 - QEN71_RS43035 0.71 -0.3 87,925 - QEN71_RS43035 0.71 -0.2 87,925 - QEN71_RS43035 0.71 +1.1 87,925 - QEN71_RS43035 0.71 +1.1 87,967 + QEN71_RS43035 0.73 +0.7 87,967 + QEN71_RS43035 0.73 +1.0 87,997 + QEN71_RS43035 0.75 +0.6 87,997 + QEN71_RS43035 0.75 +2.0 87,997 + QEN71_RS43035 0.75 -1.6 87,997 + QEN71_RS43035 0.75 +0.6 87,997 + QEN71_RS43035 0.75 -0.8 87,997 + QEN71_RS43035 0.75 -0.1 88,028 + QEN71_RS43035 0.77 +1.4 88,028 + QEN71_RS43035 0.77 -1.1 88,028 + QEN71_RS43035 0.77 -0.3 88,028 + QEN71_RS43035 0.77 +0.5 88,028 + QEN71_RS43035 0.77 -0.1 88,029 - QEN71_RS43035 0.77 -0.6 88,029 - QEN71_RS43035 0.77 -0.9 88,029 - QEN71_RS43035 0.77 -2.7 88,029 - QEN71_RS43035 0.77 -0.2 88,029 - QEN71_RS43035 0.77 -0.8 88,029 - QEN71_RS43035 0.77 -1.3 88,029 - QEN71_RS43035 0.77 -0.9 88,053 + QEN71_RS43035 0.79 +0.7 88,053 + QEN71_RS43035 0.79 -0.8 88,054 - QEN71_RS43035 0.79 +1.7 88,116 + QEN71_RS43035 0.83 +0.5 88,116 + QEN71_RS43035 0.83 +0.1 88,117 - QEN71_RS43035 0.83 -0.8 88,152 + QEN71_RS43035 0.85 -0.6 88,153 - QEN71_RS43035 0.85 +0.7 88,153 - QEN71_RS43035 0.85 -1.4 88,153 - QEN71_RS43035 0.85 -0.8 88,153 - QEN71_RS43035 0.85 -0.3 88,153 - QEN71_RS43035 0.85 -0.1 88,323 - -0.1 88,323 - +0.8 88,343 + -1.3 88,343 + +0.4 88,343 + +0.2 88,343 + -1.2 88,343 + -1.3 88,344 - -0.3 88,345 + +1.0 88,345 + -1.0 88,345 + -0.3 88,345 + -0.0 88,345 + +0.2 88,345 + -0.4 88,345 + +1.2 88,345 + +1.4 88,345 + +0.3 88,346 - +0.5 88,346 - -0.6 88,346 - +0.1 88,346 - -0.5 88,346 - -0.5 88,346 - +0.6 88,346 - +0.2 88,346 - +0.2 88,346 - -0.1 88,346 - +0.5 88,346 - -2.2 88,346 - -0.2 88,365 + -0.8 88,439 + -1.5 88,439 + -0.4 88,440 - -2.0 88,440 - +1.0 88,440 - -0.2 88,476 + -1.1 88,545 + QEN71_RS43040 0.19 +0.7 88,629 + QEN71_RS43040 0.42 -1.0 88,629 + QEN71_RS43040 0.42 +0.7 88,657 + QEN71_RS43040 0.50 -0.8 88,658 - QEN71_RS43040 0.51 +1.3 88,702 + QEN71_RS43040 0.63 +0.1 88,703 - QEN71_RS43040 0.63 +0.2 88,703 - QEN71_RS43040 0.63 +1.0 88,703 - QEN71_RS43040 0.63 -0.4 88,703 - QEN71_RS43040 0.63 -1.2 88,703 - QEN71_RS43040 0.63 -1.6 88,979 + QEN71_RS43045 0.31 -0.7 88,979 + QEN71_RS43045 0.31 +0.4 88,979 + QEN71_RS43045 0.31 -0.0 88,980 - QEN71_RS43045 0.32 -0.0 88,980 - QEN71_RS43045 0.32 +0.7 88,980 - QEN71_RS43045 0.32 +0.4 88,980 - QEN71_RS43045 0.32 +1.1 88,980 - QEN71_RS43045 0.32 +0.6 88,980 - QEN71_RS43045 0.32 -0.6 88,994 + QEN71_RS43045 0.35 -0.5 88,994 + QEN71_RS43045 0.35 -1.2 88,995 - QEN71_RS43045 0.35 -0.7 88,995 - QEN71_RS43045 0.35 +0.2 88,995 - QEN71_RS43045 0.35 -0.8 89,252 - QEN71_RS43045 0.90 -0.6 89,252 - QEN71_RS43045 0.90 -0.3 89,360 + -0.1 89,360 + -1.8 89,360 + -1.7 89,360 + +2.0 89,360 + -0.8 89,360 + -0.3 89,361 - -0.5 89,361 - -0.0 89,361 - -0.1 89,361 - -0.1 89,381 + +0.0 89,416 + +0.5 89,417 - -0.6 89,419 + +0.9 89,419 + +0.3 89,419 + +1.4 89,419 + -0.2 89,419 + +0.4 89,419 + -2.1 89,419 + +0.4 89,419 + +0.1 89,419 + +0.8 89,419 + -1.1 89,419 + +0.1 89,419 + +0.8 89,420 - +0.3 89,420 - -0.5 89,420 - -1.3 89,420 - -0.4 89,420 - +0.0 89,420 - -0.1 89,420 - +1.4 89,420 - +1.0 89,420 - -0.7 89,420 - +1.0 89,420 - +0.2 89,518 + QEN71_RS43050 0.14 +1.3 89,518 + QEN71_RS43050 0.14 -0.8 89,518 + QEN71_RS43050 0.14 +0.7 89,518 + QEN71_RS43050 0.14 -2.3 89,518 + QEN71_RS43050 0.14 -0.8 89,518 + QEN71_RS43050 0.14 -0.7 89,518 + QEN71_RS43050 0.14 +0.2 89,519 - QEN71_RS43050 0.14 -0.5 89,519 - QEN71_RS43050 0.14 -0.2 89,519 - QEN71_RS43050 0.14 -0.8 89,519 - QEN71_RS43050 0.14 -0.6 89,519 - QEN71_RS43050 0.14 -1.7 89,519 - QEN71_RS43050 0.14 +0.4 89,580 + QEN71_RS43050 0.26 -0.5 89,580 + QEN71_RS43050 0.26 -2.4 89,580 + QEN71_RS43050 0.26 -0.1 89,581 - QEN71_RS43050 0.26 -0.8 89,581 - QEN71_RS43050 0.26 -3.3 89,581 - QEN71_RS43050 0.26 +0.4 89,581 - QEN71_RS43050 0.26 +0.2 89,581 - QEN71_RS43050 0.26 +0.1 89,625 - QEN71_RS43050 0.35 +0.5 89,673 - QEN71_RS43050 0.44 +0.9 89,673 - QEN71_RS43050 0.44 -0.6 89,729 + QEN71_RS43050 0.55 +0.1 89,729 + QEN71_RS43050 0.55 +1.2 89,773 - QEN71_RS43050 0.64 -0.3 89,773 - QEN71_RS43050 0.64 -1.3 89,773 - QEN71_RS43050 0.64 +0.4 89,879 + QEN71_RS43050 0.85 -0.2 89,880 - QEN71_RS43050 0.85 -0.6 89,933 + +0.2 89,934 - +0.2 89,983 + -0.4 89,983 + -0.9 89,983 + -0.9 89,984 - -0.9 89,984 - -1.1 89,984 - +0.9 89,984 - -0.3 89,987 + +0.1 89,987 + -1.0 89,987 + -0.6 89,988 - -0.3 89,988 - +2.5 89,988 - -0.6 90,047 + -0.6 90,047 + +0.3 90,047 + +1.0 90,047 + +0.3 90,047 + -0.2 90,047 + -0.5 90,048 - -0.7 90,048 - -0.9 90,048 - +0.1 90,048 - +0.2 90,051 + -0.8 90,051 + -0.5 90,052 - +1.7 90,099 - -1.1
Or see this region's nucleotide sequence