Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41390 and QEN71_RS41395 are separated by 55 nucleotides QEN71_RS41395 and QEN71_RS41400 are separated by 131 nucleotides
QEN71_RS41390: QEN71_RS41390 - lactonase family protein, at 357,533 to 358,594
_RS41390
QEN71_RS41395: QEN71_RS41395 - MFS transporter, at 358,650 to 359,984
_RS41395
QEN71_RS41400: QEN71_RS41400 - porin, at 360,116 to 361,290
_RS41400
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.701 kb on + strand, within QEN71_RS41390 at 357.701 kb on + strand, within QEN71_RS41390 at 357.702 kb on - strand, within QEN71_RS41390 at 357.702 kb on - strand, within QEN71_RS41390 at 357.796 kb on + strand, within QEN71_RS41390 at 357.797 kb on - strand, within QEN71_RS41390 at 357.856 kb on + strand, within QEN71_RS41390 at 357.857 kb on - strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.160 kb on + strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.161 kb on - strand, within QEN71_RS41390 at 358.196 kb on + strand, within QEN71_RS41390 at 358.196 kb on + strand, within QEN71_RS41390 at 358.196 kb on + strand, within QEN71_RS41390 at 358.197 kb on - strand, within QEN71_RS41390 at 358.197 kb on - strand, within QEN71_RS41390 at 358.258 kb on + strand, within QEN71_RS41390 at 358.461 kb on - strand, within QEN71_RS41390 at 358.461 kb on - strand, within QEN71_RS41390 at 358.461 kb on - strand, within QEN71_RS41390 at 358.740 kb on + strand at 358.740 kb on + strand at 358.740 kb on + strand at 358.740 kb on + strand at 358.741 kb on - strand at 358.741 kb on - strand at 358.741 kb on - strand at 358.741 kb on - strand at 358.741 kb on - strand at 358.858 kb on - strand, within QEN71_RS41395 at 358.899 kb on + strand, within QEN71_RS41395 at 358.899 kb on + strand, within QEN71_RS41395 at 358.899 kb on + strand, within QEN71_RS41395 at 358.989 kb on + strand, within QEN71_RS41395 at 358.989 kb on + strand, within QEN71_RS41395 at 358.989 kb on + strand, within QEN71_RS41395 at 358.990 kb on - strand, within QEN71_RS41395 at 358.990 kb on - strand, within QEN71_RS41395 at 358.990 kb on - strand, within QEN71_RS41395 at 359.049 kb on + strand, within QEN71_RS41395 at 359.124 kb on + strand, within QEN71_RS41395 at 359.124 kb on + strand, within QEN71_RS41395 at 359.124 kb on + strand, within QEN71_RS41395 at 359.125 kb on - strand, within QEN71_RS41395 at 359.125 kb on - strand, within QEN71_RS41395 at 359.125 kb on - strand, within QEN71_RS41395 at 359.400 kb on + strand, within QEN71_RS41395 at 359.400 kb on + strand, within QEN71_RS41395 at 359.400 kb on + strand, within QEN71_RS41395 at 359.401 kb on - strand, within QEN71_RS41395 at 359.401 kb on - strand, within QEN71_RS41395 at 359.401 kb on - strand, within QEN71_RS41395 at 359.415 kb on + strand, within QEN71_RS41395 at 359.415 kb on + strand, within QEN71_RS41395 at 359.416 kb on - strand, within QEN71_RS41395 at 359.416 kb on - strand, within QEN71_RS41395 at 359.416 kb on - strand, within QEN71_RS41395 at 359.424 kb on + strand, within QEN71_RS41395 at 359.425 kb on - strand, within QEN71_RS41395 at 359.425 kb on - strand, within QEN71_RS41395 at 359.498 kb on + strand, within QEN71_RS41395 at 359.499 kb on - strand, within QEN71_RS41395 at 359.530 kb on - strand, within QEN71_RS41395 at 359.664 kb on + strand, within QEN71_RS41395 at 359.664 kb on + strand, within QEN71_RS41395 at 359.664 kb on + strand, within QEN71_RS41395 at 359.665 kb on - strand, within QEN71_RS41395 at 359.668 kb on + strand, within QEN71_RS41395 at 359.668 kb on + strand, within QEN71_RS41395 at 359.668 kb on + strand, within QEN71_RS41395 at 359.668 kb on + strand, within QEN71_RS41395 at 359.669 kb on - strand, within QEN71_RS41395 at 359.669 kb on - strand, within QEN71_RS41395 at 359.669 kb on - strand, within QEN71_RS41395 at 359.669 kb on - strand, within QEN71_RS41395 at 359.706 kb on + strand, within QEN71_RS41395 at 359.707 kb on - strand, within QEN71_RS41395 at 359.707 kb on - strand, within QEN71_RS41395 at 359.771 kb on - strand, within QEN71_RS41395 at 359.835 kb on + strand, within QEN71_RS41395 at 359.835 kb on + strand, within QEN71_RS41395 at 359.836 kb on - strand, within QEN71_RS41395 at 359.836 kb on - strand, within QEN71_RS41395 at 359.838 kb on - strand, within QEN71_RS41395 at 359.838 kb on - strand, within QEN71_RS41395 at 360.131 kb on + strand at 360.155 kb on + strand at 360.156 kb on - strand at 360.182 kb on + strand at 360.182 kb on + strand at 360.183 kb on - strand at 360.183 kb on - strand at 360.352 kb on + strand, within QEN71_RS41400 at 360.352 kb on + strand, within QEN71_RS41400 at 360.352 kb on + strand, within QEN71_RS41400 at 360.352 kb on + strand, within QEN71_RS41400 at 360.353 kb on - strand, within QEN71_RS41400 at 360.406 kb on + strand, within QEN71_RS41400 at 360.407 kb on - strand, within QEN71_RS41400 at 360.438 kb on + strand, within QEN71_RS41400 at 360.438 kb on + strand, within QEN71_RS41400 at 360.439 kb on - strand, within QEN71_RS41400 at 360.444 kb on - strand, within QEN71_RS41400 at 360.455 kb on - strand, within QEN71_RS41400 at 360.475 kb on + strand, within QEN71_RS41400 at 360.511 kb on + strand, within QEN71_RS41400 at 360.511 kb on + strand, within QEN71_RS41400 at 360.512 kb on - strand, within QEN71_RS41400 at 360.595 kb on + strand, within QEN71_RS41400 at 360.596 kb on - strand, within QEN71_RS41400 at 360.621 kb on - strand, within QEN71_RS41400 at 360.686 kb on - strand, within QEN71_RS41400 at 360.789 kb on + strand, within QEN71_RS41400 at 360.789 kb on + strand, within QEN71_RS41400 at 360.789 kb on + strand, within QEN71_RS41400 at 360.913 kb on + strand, within QEN71_RS41400
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 357,701 + QEN71_RS41390 0.16 -1.3 357,701 + QEN71_RS41390 0.16 -0.3 357,702 - QEN71_RS41390 0.16 -0.7 357,702 - QEN71_RS41390 0.16 -0.9 357,796 + QEN71_RS41390 0.25 -2.2 357,797 - QEN71_RS41390 0.25 -0.5 357,856 + QEN71_RS41390 0.30 -0.4 357,857 - QEN71_RS41390 0.31 -1.2 358,160 + QEN71_RS41390 0.59 -0.7 358,160 + QEN71_RS41390 0.59 +0.6 358,160 + QEN71_RS41390 0.59 +0.4 358,160 + QEN71_RS41390 0.59 +0.9 358,160 + QEN71_RS41390 0.59 +0.4 358,160 + QEN71_RS41390 0.59 -1.5 358,160 + QEN71_RS41390 0.59 +0.0 358,160 + QEN71_RS41390 0.59 -0.7 358,160 + QEN71_RS41390 0.59 -0.1 358,160 + QEN71_RS41390 0.59 -0.7 358,160 + QEN71_RS41390 0.59 +1.6 358,160 + QEN71_RS41390 0.59 +1.0 358,160 + QEN71_RS41390 0.59 +0.4 358,160 + QEN71_RS41390 0.59 -1.3 358,161 - QEN71_RS41390 0.59 -1.1 358,161 - QEN71_RS41390 0.59 +1.9 358,161 - QEN71_RS41390 0.59 +0.5 358,161 - QEN71_RS41390 0.59 -0.4 358,161 - QEN71_RS41390 0.59 -0.0 358,161 - QEN71_RS41390 0.59 -0.9 358,161 - QEN71_RS41390 0.59 +0.4 358,161 - QEN71_RS41390 0.59 -0.4 358,161 - QEN71_RS41390 0.59 +1.0 358,161 - QEN71_RS41390 0.59 -0.3 358,196 + QEN71_RS41390 0.62 -0.8 358,196 + QEN71_RS41390 0.62 +0.9 358,196 + QEN71_RS41390 0.62 -1.3 358,197 - QEN71_RS41390 0.63 +0.8 358,197 - QEN71_RS41390 0.63 -1.1 358,258 + QEN71_RS41390 0.68 -0.3 358,461 - QEN71_RS41390 0.87 -0.8 358,461 - QEN71_RS41390 0.87 -1.4 358,461 - QEN71_RS41390 0.87 +1.0 358,740 + -2.2 358,740 + +0.6 358,740 + -0.5 358,740 + +1.4 358,741 - -0.4 358,741 - -0.4 358,741 - -0.4 358,741 - +0.3 358,741 - -1.5 358,858 - QEN71_RS41395 0.16 -0.2 358,899 + QEN71_RS41395 0.19 -1.2 358,899 + QEN71_RS41395 0.19 +1.0 358,899 + QEN71_RS41395 0.19 -0.5 358,989 + QEN71_RS41395 0.25 -1.7 358,989 + QEN71_RS41395 0.25 -0.6 358,989 + QEN71_RS41395 0.25 +0.5 358,990 - QEN71_RS41395 0.25 -2.2 358,990 - QEN71_RS41395 0.25 +0.6 358,990 - QEN71_RS41395 0.25 -0.5 359,049 + QEN71_RS41395 0.30 -1.2 359,124 + QEN71_RS41395 0.36 +0.2 359,124 + QEN71_RS41395 0.36 +0.7 359,124 + QEN71_RS41395 0.36 +0.2 359,125 - QEN71_RS41395 0.36 +1.8 359,125 - QEN71_RS41395 0.36 -0.4 359,125 - QEN71_RS41395 0.36 -0.8 359,400 + QEN71_RS41395 0.56 +1.4 359,400 + QEN71_RS41395 0.56 -0.7 359,400 + QEN71_RS41395 0.56 -0.3 359,401 - QEN71_RS41395 0.56 -0.4 359,401 - QEN71_RS41395 0.56 +0.2 359,401 - QEN71_RS41395 0.56 +0.5 359,415 + QEN71_RS41395 0.57 -2.3 359,415 + QEN71_RS41395 0.57 -0.8 359,416 - QEN71_RS41395 0.57 +0.8 359,416 - QEN71_RS41395 0.57 -1.0 359,416 - QEN71_RS41395 0.57 -0.2 359,424 + QEN71_RS41395 0.58 -0.8 359,425 - QEN71_RS41395 0.58 -1.1 359,425 - QEN71_RS41395 0.58 +0.3 359,498 + QEN71_RS41395 0.64 +0.6 359,499 - QEN71_RS41395 0.64 -1.8 359,530 - QEN71_RS41395 0.66 -0.1 359,664 + QEN71_RS41395 0.76 -0.7 359,664 + QEN71_RS41395 0.76 -0.9 359,664 + QEN71_RS41395 0.76 +1.1 359,665 - QEN71_RS41395 0.76 -0.1 359,668 + QEN71_RS41395 0.76 +0.1 359,668 + QEN71_RS41395 0.76 -0.4 359,668 + QEN71_RS41395 0.76 -0.1 359,668 + QEN71_RS41395 0.76 -0.9 359,669 - QEN71_RS41395 0.76 -1.6 359,669 - QEN71_RS41395 0.76 -0.4 359,669 - QEN71_RS41395 0.76 +0.4 359,669 - QEN71_RS41395 0.76 -0.7 359,706 + QEN71_RS41395 0.79 -0.0 359,707 - QEN71_RS41395 0.79 +1.6 359,707 - QEN71_RS41395 0.79 +0.9 359,771 - QEN71_RS41395 0.84 -1.0 359,835 + QEN71_RS41395 0.89 +0.1 359,835 + QEN71_RS41395 0.89 -0.6 359,836 - QEN71_RS41395 0.89 -0.6 359,836 - QEN71_RS41395 0.89 -0.1 359,838 - QEN71_RS41395 0.89 -1.6 359,838 - QEN71_RS41395 0.89 -0.4 360,131 + -1.6 360,155 + +1.0 360,156 - -0.5 360,182 + +0.2 360,182 + -1.4 360,183 - +0.6 360,183 - -0.4 360,352 + QEN71_RS41400 0.20 -0.5 360,352 + QEN71_RS41400 0.20 -0.3 360,352 + QEN71_RS41400 0.20 -1.7 360,352 + QEN71_RS41400 0.20 +0.9 360,353 - QEN71_RS41400 0.20 -0.2 360,406 + QEN71_RS41400 0.25 -1.0 360,407 - QEN71_RS41400 0.25 +0.9 360,438 + QEN71_RS41400 0.27 -0.4 360,438 + QEN71_RS41400 0.27 +1.5 360,439 - QEN71_RS41400 0.27 +1.7 360,444 - QEN71_RS41400 0.28 -0.0 360,455 - QEN71_RS41400 0.29 -1.2 360,475 + QEN71_RS41400 0.31 -0.6 360,511 + QEN71_RS41400 0.34 +0.6 360,511 + QEN71_RS41400 0.34 -1.7 360,512 - QEN71_RS41400 0.34 +0.0 360,595 + QEN71_RS41400 0.41 +0.9 360,596 - QEN71_RS41400 0.41 -0.4 360,621 - QEN71_RS41400 0.43 -1.9 360,686 - QEN71_RS41400 0.49 +0.3 360,789 + QEN71_RS41400 0.57 +0.5 360,789 + QEN71_RS41400 0.57 -0.0 360,789 + QEN71_RS41400 0.57 -0.5 360,913 + QEN71_RS41400 0.68 -1.3
Or see this region's nucleotide sequence