Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS38380 and QEN71_RS38385 are separated by 43 nucleotides QEN71_RS38385 and QEN71_RS38390 are separated by 51 nucleotides QEN71_RS38390 and QEN71_RS38395 are separated by 130 nucleotides
QEN71_RS38380: QEN71_RS38380 - ribulose-bisphosphate carboxylase large subunit family protein, at 1,994,948 to 1,996,192
_RS38380
QEN71_RS38385: QEN71_RS38385 - phosphogluconate dehydrogenase C-terminal domain-containing protein, at 1,996,236 to 1,997,066
_RS38385
QEN71_RS38390: QEN71_RS38390 - MFS transporter, at 1,997,118 to 1,998,497
_RS38390
QEN71_RS38395: QEN71_RS38395 - hypothetical protein, at 1,998,628 to 2,000,577
_RS38395
Position (kb) 1997
1998
1999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1996.167 kb on + strand at 1996.167 kb on + strand at 1996.168 kb on - strand at 1996.168 kb on - strand at 1996.168 kb on - strand at 1996.171 kb on + strand at 1996.172 kb on - strand at 1996.477 kb on + strand, within QEN71_RS38385 at 1996.477 kb on + strand, within QEN71_RS38385 at 1996.478 kb on - strand, within QEN71_RS38385 at 1996.478 kb on - strand, within QEN71_RS38385 at 1996.478 kb on - strand, within QEN71_RS38385 at 1996.563 kb on - strand, within QEN71_RS38385 at 1996.563 kb on - strand, within QEN71_RS38385 at 1996.570 kb on + strand, within QEN71_RS38385 at 1996.570 kb on + strand, within QEN71_RS38385 at 1996.571 kb on - strand, within QEN71_RS38385 at 1996.571 kb on - strand, within QEN71_RS38385 at 1996.738 kb on + strand, within QEN71_RS38385 at 1996.739 kb on - strand, within QEN71_RS38385 at 1996.988 kb on - strand at 1997.088 kb on + strand at 1997.287 kb on + strand, within QEN71_RS38390 at 1997.288 kb on - strand, within QEN71_RS38390 at 1997.504 kb on + strand, within QEN71_RS38390 at 1997.684 kb on - strand, within QEN71_RS38390 at 1997.692 kb on + strand, within QEN71_RS38390 at 1997.692 kb on + strand, within QEN71_RS38390 at 1997.692 kb on + strand, within QEN71_RS38390 at 1997.707 kb on + strand, within QEN71_RS38390 at 1997.707 kb on + strand, within QEN71_RS38390 at 1997.707 kb on + strand, within QEN71_RS38390 at 1997.708 kb on - strand, within QEN71_RS38390 at 1997.708 kb on - strand, within QEN71_RS38390 at 1997.708 kb on - strand, within QEN71_RS38390 at 1997.878 kb on + strand, within QEN71_RS38390 at 1998.143 kb on - strand, within QEN71_RS38390 at 1998.170 kb on + strand, within QEN71_RS38390 at 1998.274 kb on + strand, within QEN71_RS38390 at 1998.274 kb on + strand, within QEN71_RS38390 at 1998.275 kb on - strand, within QEN71_RS38390 at 1998.592 kb on + strand at 1998.592 kb on + strand at 1998.608 kb on + strand at 1998.608 kb on + strand at 1998.608 kb on + strand at 1998.609 kb on - strand at 1998.609 kb on - strand at 1998.772 kb on + strand at 1999.137 kb on + strand, within QEN71_RS38395 at 1999.201 kb on + strand, within QEN71_RS38395 at 1999.388 kb on + strand, within QEN71_RS38395 at 1999.389 kb on - strand, within QEN71_RS38395 at 1999.389 kb on - strand, within QEN71_RS38395 at 1999.389 kb on - strand, within QEN71_RS38395 at 1999.389 kb on - strand, within QEN71_RS38395 at 1999.446 kb on - strand, within QEN71_RS38395 at 1999.446 kb on - strand, within QEN71_RS38395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,996,167 + -0.2 1,996,167 + +1.9 1,996,168 - -0.6 1,996,168 - -0.2 1,996,168 - +1.4 1,996,171 + +1.0 1,996,172 - +0.5 1,996,477 + QEN71_RS38385 0.29 -0.4 1,996,477 + QEN71_RS38385 0.29 +1.2 1,996,478 - QEN71_RS38385 0.29 +0.2 1,996,478 - QEN71_RS38385 0.29 +0.6 1,996,478 - QEN71_RS38385 0.29 +0.9 1,996,563 - QEN71_RS38385 0.39 +1.5 1,996,563 - QEN71_RS38385 0.39 -0.1 1,996,570 + QEN71_RS38385 0.40 -0.7 1,996,570 + QEN71_RS38385 0.40 -0.4 1,996,571 - QEN71_RS38385 0.40 +0.2 1,996,571 - QEN71_RS38385 0.40 +0.6 1,996,738 + QEN71_RS38385 0.60 +1.3 1,996,739 - QEN71_RS38385 0.61 -0.6 1,996,988 - +0.8 1,997,088 + +0.5 1,997,287 + QEN71_RS38390 0.12 -0.2 1,997,288 - QEN71_RS38390 0.12 +0.1 1,997,504 + QEN71_RS38390 0.28 -0.1 1,997,684 - QEN71_RS38390 0.41 -0.5 1,997,692 + QEN71_RS38390 0.42 +0.6 1,997,692 + QEN71_RS38390 0.42 +0.7 1,997,692 + QEN71_RS38390 0.42 -1.1 1,997,707 + QEN71_RS38390 0.43 -0.2 1,997,707 + QEN71_RS38390 0.43 -0.3 1,997,707 + QEN71_RS38390 0.43 -0.9 1,997,708 - QEN71_RS38390 0.43 -0.9 1,997,708 - QEN71_RS38390 0.43 +0.1 1,997,708 - QEN71_RS38390 0.43 +0.6 1,997,878 + QEN71_RS38390 0.55 -0.9 1,998,143 - QEN71_RS38390 0.74 -2.9 1,998,170 + QEN71_RS38390 0.76 +0.2 1,998,274 + QEN71_RS38390 0.84 +1.0 1,998,274 + QEN71_RS38390 0.84 +0.9 1,998,275 - QEN71_RS38390 0.84 -0.6 1,998,592 + -0.2 1,998,592 + +0.5 1,998,608 + +0.1 1,998,608 + -0.5 1,998,608 + -0.2 1,998,609 - -0.7 1,998,609 - +0.1 1,998,772 + +0.4 1,999,137 + QEN71_RS38395 0.26 +1.6 1,999,201 + QEN71_RS38395 0.29 -2.9 1,999,388 + QEN71_RS38395 0.39 +0.2 1,999,389 - QEN71_RS38395 0.39 +0.5 1,999,389 - QEN71_RS38395 0.39 +0.0 1,999,389 - QEN71_RS38395 0.39 +0.4 1,999,389 - QEN71_RS38395 0.39 -1.1 1,999,446 - QEN71_RS38395 0.42 +0.3 1,999,446 - QEN71_RS38395 0.42 +0.6
Or see this region's nucleotide sequence