Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37660

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37655 and QEN71_RS37660 are separated by 107 nucleotidesQEN71_RS37660 and QEN71_RS37665 are separated by 71 nucleotidesQEN71_RS37665 and QEN71_RS37670 overlap by 4 nucleotides QEN71_RS37655: QEN71_RS37655 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 1,813,904 to 1,815,415 _RS37655 QEN71_RS37660: QEN71_RS37660 - LysR family transcriptional regulator, at 1,815,523 to 1,816,464 _RS37660 QEN71_RS37665: QEN71_RS37665 - hypothetical protein, at 1,816,536 to 1,816,808 _RS37665 QEN71_RS37670: QEN71_RS37670 - hypothetical protein, at 1,816,805 to 1,817,602 _RS37670 Position (kb) 1815 1816 1817Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1814.554 kb on + strand, within QEN71_RS37655at 1814.554 kb on + strand, within QEN71_RS37655at 1814.555 kb on - strand, within QEN71_RS37655at 1814.638 kb on + strand, within QEN71_RS37655at 1814.638 kb on + strand, within QEN71_RS37655at 1814.703 kb on + strand, within QEN71_RS37655at 1814.703 kb on + strand, within QEN71_RS37655at 1814.704 kb on - strand, within QEN71_RS37655at 1814.704 kb on - strand, within QEN71_RS37655at 1814.704 kb on - strand, within QEN71_RS37655at 1814.704 kb on - strand, within QEN71_RS37655at 1814.704 kb on - strand, within QEN71_RS37655at 1814.704 kb on - strand, within QEN71_RS37655at 1815.482 kb on + strandat 1815.595 kb on + strandat 1815.595 kb on + strandat 1815.758 kb on - strand, within QEN71_RS37660at 1816.052 kb on - strand, within QEN71_RS37660at 1816.114 kb on + strand, within QEN71_RS37660at 1816.115 kb on - strand, within QEN71_RS37660at 1816.369 kb on + strand, within QEN71_RS37660at 1816.369 kb on + strand, within QEN71_RS37660at 1816.370 kb on - strandat 1816.372 kb on - strandat 1816.372 kb on - strandat 1816.372 kb on - strandat 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.579 kb on + strand, within QEN71_RS37665at 1816.580 kb on - strand, within QEN71_RS37665at 1816.749 kb on + strand, within QEN71_RS37665at 1816.749 kb on + strand, within QEN71_RS37665at 1816.750 kb on - strand, within QEN71_RS37665at 1816.771 kb on + strand, within QEN71_RS37665at 1816.772 kb on - strand, within QEN71_RS37665at 1816.775 kb on + strand, within QEN71_RS37665at 1816.776 kb on - strand, within QEN71_RS37665at 1816.821 kb on - strandat 1816.890 kb on + strand, within QEN71_RS37670at 1816.890 kb on + strand, within QEN71_RS37670at 1816.891 kb on - strand, within QEN71_RS37670at 1816.921 kb on - strand, within QEN71_RS37670at 1816.955 kb on - strand, within QEN71_RS37670at 1817.005 kb on - strand, within QEN71_RS37670at 1817.005 kb on - strand, within QEN71_RS37670at 1817.068 kb on + strand, within QEN71_RS37670at 1817.068 kb on + strand, within QEN71_RS37670at 1817.068 kb on + strand, within QEN71_RS37670at 1817.134 kb on + strand, within QEN71_RS37670at 1817.134 kb on + strand, within QEN71_RS37670at 1817.200 kb on + strand, within QEN71_RS37670at 1817.317 kb on + strand, within QEN71_RS37670at 1817.334 kb on + strand, within QEN71_RS37670at 1817.335 kb on - strand, within QEN71_RS37670at 1817.363 kb on - strand, within QEN71_RS37670at 1817.392 kb on + strand, within QEN71_RS37670

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,814,554 + QEN71_RS37655 0.43 +0.0
1,814,554 + QEN71_RS37655 0.43 -5.0
1,814,555 - QEN71_RS37655 0.43 -1.0
1,814,638 + QEN71_RS37655 0.49 -3.3
1,814,638 + QEN71_RS37655 0.49 -3.8
1,814,703 + QEN71_RS37655 0.53 -1.3
1,814,703 + QEN71_RS37655 0.53 -1.3
1,814,704 - QEN71_RS37655 0.53 -3.9
1,814,704 - QEN71_RS37655 0.53 -3.0
1,814,704 - QEN71_RS37655 0.53 -2.5
1,814,704 - QEN71_RS37655 0.53 -1.3
1,814,704 - QEN71_RS37655 0.53 -2.6
1,814,704 - QEN71_RS37655 0.53 -2.4
1,815,482 + -1.0
1,815,595 + -1.3
1,815,595 + -2.1
1,815,758 - QEN71_RS37660 0.25 -1.6
1,816,052 - QEN71_RS37660 0.56 -3.1
1,816,114 + QEN71_RS37660 0.63 -2.0
1,816,115 - QEN71_RS37660 0.63 -2.8
1,816,369 + QEN71_RS37660 0.90 -0.6
1,816,369 + QEN71_RS37660 0.90 -3.1
1,816,370 - -2.0
1,816,372 - -2.5
1,816,372 - -2.1
1,816,372 - -2.7
1,816,579 + QEN71_RS37665 0.16 -0.3
1,816,579 + QEN71_RS37665 0.16 -0.7
1,816,579 + QEN71_RS37665 0.16 +0.2
1,816,579 + QEN71_RS37665 0.16 -0.4
1,816,579 + QEN71_RS37665 0.16 -0.7
1,816,579 + QEN71_RS37665 0.16 -1.0
1,816,579 + QEN71_RS37665 0.16 -1.9
1,816,579 + QEN71_RS37665 0.16 +0.5
1,816,580 - QEN71_RS37665 0.16 -1.4
1,816,749 + QEN71_RS37665 0.78 -0.7
1,816,749 + QEN71_RS37665 0.78 +0.2
1,816,750 - QEN71_RS37665 0.78 +1.0
1,816,771 + QEN71_RS37665 0.86 -1.1
1,816,772 - QEN71_RS37665 0.86 +0.6
1,816,775 + QEN71_RS37665 0.88 +0.1
1,816,776 - QEN71_RS37665 0.88 +0.9
1,816,821 - -0.4
1,816,890 + QEN71_RS37670 0.11 +0.6
1,816,890 + QEN71_RS37670 0.11 -0.0
1,816,891 - QEN71_RS37670 0.11 -0.2
1,816,921 - QEN71_RS37670 0.15 +0.1
1,816,955 - QEN71_RS37670 0.19 +0.5
1,817,005 - QEN71_RS37670 0.25 -0.2
1,817,005 - QEN71_RS37670 0.25 -1.0
1,817,068 + QEN71_RS37670 0.33 -1.5
1,817,068 + QEN71_RS37670 0.33 -0.5
1,817,068 + QEN71_RS37670 0.33 +0.8
1,817,134 + QEN71_RS37670 0.41 -0.8
1,817,134 + QEN71_RS37670 0.41 +1.5
1,817,200 + QEN71_RS37670 0.49 +0.1
1,817,317 + QEN71_RS37670 0.64 -0.6
1,817,334 + QEN71_RS37670 0.66 -0.0
1,817,335 - QEN71_RS37670 0.66 -0.7
1,817,363 - QEN71_RS37670 0.70 +0.0
1,817,392 + QEN71_RS37670 0.74 +0.2

Or see this region's nucleotide sequence