Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34975

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
1,180,058	-		QEN71_RS34970	0.36	+0.4
1,180,082	+		QEN71_RS34970	0.37	+0.3
1,180,083	-		QEN71_RS34970	0.37	+0.7
1,180,083	-		QEN71_RS34970	0.37	-0.8
1,180,121	+		QEN71_RS34970	0.40	-0.2
1,180,174	+		QEN71_RS34970	0.43	-0.5
1,180,174	+		QEN71_RS34970	0.43	+0.5
1,180,174	+		QEN71_RS34970	0.43	+1.5
1,180,174	+		QEN71_RS34970	0.43	+0.4
1,180,174	+		QEN71_RS34970	0.43	-0.1
1,180,174	+		QEN71_RS34970	0.43	-0.9
1,180,175	-		QEN71_RS34970	0.43	+0.7
1,180,175	-		QEN71_RS34970	0.43	-0.1
1,180,175	-		QEN71_RS34970	0.43	+0.1
1,180,201	+		QEN71_RS34970	0.45	-0.3
1,180,201	+		QEN71_RS34970	0.45	-1.2
1,180,201	+		QEN71_RS34970	0.45	+0.4
1,180,201	+		QEN71_RS34970	0.45	-1.0
1,180,201	+		QEN71_RS34970	0.45	+0.3
1,180,201	+		QEN71_RS34970	0.45	-0.3
1,180,202	-		QEN71_RS34970	0.45	+2.1
1,180,202	-		QEN71_RS34970	0.45	+1.4
1,180,246	+		QEN71_RS34970	0.48	-0.1
1,180,246	+		QEN71_RS34970	0.48	-0.2
1,180,247	-		QEN71_RS34970	0.48	+0.1
1,180,247	-		QEN71_RS34970	0.48	+0.3
1,180,466	-		QEN71_RS34970	0.62	-0.5
1,180,521	+		QEN71_RS34970	0.66	+0.4
1,180,633	+		QEN71_RS34970	0.73	+0.6
1,180,633	+		QEN71_RS34970	0.73	+1.1
1,180,633	+		QEN71_RS34970	0.73	+0.0
1,180,633	+		QEN71_RS34970	0.73	-0.3
1,180,633	+		QEN71_RS34970	0.73	+0.1
1,180,633	+		QEN71_RS34970	0.73	+1.0
1,180,634	-		QEN71_RS34970	0.73	-1.3
1,180,634	-		QEN71_RS34970	0.73	-0.8
1,180,634	-		QEN71_RS34970	0.73	+1.0
1,180,634	-		QEN71_RS34970	0.73	-0.6
1,180,634	-		QEN71_RS34970	0.73	+1.1
1,180,765	+		QEN71_RS34970	0.81	-0.4
1,180,766	-		QEN71_RS34970	0.81	-0.1
1,180,766	-		QEN71_RS34970	0.81	+0.7
1,180,766	-		QEN71_RS34970	0.81	+0.3
1,180,832	+		QEN71_RS34970	0.86	-0.1
1,180,832	+		QEN71_RS34970	0.86	+0.1
1,180,832	+		QEN71_RS34970	0.86	-1.4
1,180,832	+		QEN71_RS34970	0.86	+1.4
1,180,833	-		QEN71_RS34970	0.86	-0.7
1,180,833	-		QEN71_RS34970	0.86	-0.4
1,180,839	+		QEN71_RS34970	0.86	+0.1
1,180,840	-		QEN71_RS34970	0.86	+1.0
1,180,840	-		QEN71_RS34970	0.86	-0.6
1,180,952	+				+0.4
1,180,952	+				-0.5
1,180,952	+				-0.7
1,180,953	-				-0.2
1,180,953	-				+0.3
1,180,953	-				-0.3
1,180,953	-				+0.6
1,180,953	-				-1.6
1,181,053	+				-0.4
1,181,053	+				+0.8
1,181,098	+		QEN71_RS34975	0.13	-2.9
1,181,098	+		QEN71_RS34975	0.13	-2.6
1,181,098	+		QEN71_RS34975	0.13	-3.9
1,181,099	-		QEN71_RS34975	0.13	-0.2
1,181,099	-		QEN71_RS34975	0.13	-3.9
1,181,099	-		QEN71_RS34975	0.13	-5.0
1,181,099	-		QEN71_RS34975	0.13	-1.6
1,181,099	-		QEN71_RS34975	0.13	-3.0
1,181,099	-		QEN71_RS34975	0.13	-1.9
1,181,116	+		QEN71_RS34975	0.17	-4.7
1,181,116	+		QEN71_RS34975	0.17	-1.0
1,181,116	+		QEN71_RS34975	0.17	-3.0
1,181,116	+		QEN71_RS34975	0.17	-1.8
1,181,116	+		QEN71_RS34975	0.17	-2.8
1,181,116	+		QEN71_RS34975	0.17	-2.1
1,181,117	-		QEN71_RS34975	0.18	-4.9
1,181,117	-		QEN71_RS34975	0.18	-1.0
1,181,117	-		QEN71_RS34975	0.18	-1.3
1,181,117	-		QEN71_RS34975	0.18	-4.2
1,181,117	-		QEN71_RS34975	0.18	-2.1
1,181,218	+		QEN71_RS34975	0.45	-3.8
1,181,218	+		QEN71_RS34975	0.45	-4.1
1,181,218	+		QEN71_RS34975	0.45	-5.4
1,181,218	+		QEN71_RS34975	0.45	-4.5
1,181,218	+		QEN71_RS34975	0.45	-1.8
1,181,218	+		QEN71_RS34975	0.45	-2.0
1,181,218	+		QEN71_RS34975	0.45	-3.3
1,181,219	-		QEN71_RS34975	0.46	-4.2
1,181,219	-		QEN71_RS34975	0.46	-4.1
1,181,219	-		QEN71_RS34975	0.46	-4.3
1,181,219	-		QEN71_RS34975	0.46	-3.0
1,181,219	-		QEN71_RS34975	0.46	-3.4
1,181,279	-		QEN71_RS34975	0.62	-5.3
1,181,412	+				-4.4
1,181,412	+				-3.0
1,181,412	+				-3.7
1,181,412	+				-3.9
1,181,412	+				-2.9
1,181,412	+				-4.4
1,181,412	+				-4.2
1,181,412	+				-3.0
1,181,413	-				+0.4
1,181,413	-				-0.2
1,181,413	-				-2.4
1,181,439	+				-0.3
1,181,440	-				+0.5
1,181,440	-				-0.9
1,181,473	+		QEN71_RS34980	0.11	-0.8
1,181,474	-		QEN71_RS34980	0.11	-0.9
1,181,474	-		QEN71_RS34980	0.11	-0.8
1,181,487	+		QEN71_RS34980	0.14	-0.1
1,181,550	+		QEN71_RS34980	0.25	-2.4
1,181,550	+		QEN71_RS34980	0.25	-0.0
1,181,551	-		QEN71_RS34980	0.26	+0.3
1,181,629	-		QEN71_RS34980	0.40	-0.8
1,181,723	+		QEN71_RS34980	0.58	-1.0
1,181,724	-		QEN71_RS34980	0.58	-1.0
1,181,724	-		QEN71_RS34980	0.58	+0.4
1,181,724	-		QEN71_RS34980	0.58	+1.2
1,181,733	+		QEN71_RS34980	0.59	+0.2
1,181,734	-		QEN71_RS34980	0.60	+0.8
1,181,764	+		QEN71_RS34980	0.65	-0.2
1,181,764	+		QEN71_RS34980	0.65	-0.0
1,181,764	+		QEN71_RS34980	0.65	+0.2
1,181,764	+		QEN71_RS34980	0.65	+0.2
1,181,765	-		QEN71_RS34980	0.65	-1.2
1,181,765	-		QEN71_RS34980	0.65	+0.3
1,181,765	-		QEN71_RS34980	0.65	+0.2
1,181,812	-		QEN71_RS34980	0.74	-0.2
1,181,868	+		QEN71_RS34980	0.85	-0.2
1,181,868	+		QEN71_RS34980	0.85	+0.1
1,181,869	-		QEN71_RS34980	0.85	-0.3
1,181,869	-		QEN71_RS34980	0.85	-0.4
1,181,961	+				+0.6
1,181,961	+				-0.8
1,181,962	-				+1.8
1,181,962	-				+0.7
1,181,962	-				-0.4
1,181,962	-				+0.7
1,181,962	-				-0.2
1,181,962	-				-0.7
1,182,114	+		QEN71_RS34985	0.68	-0.4
1,182,114	+		QEN71_RS34985	0.68	+0.7
1,182,114	+		QEN71_RS34985	0.68	+0.5
1,182,114	+		QEN71_RS34985	0.68	-0.9
1,182,114	+		QEN71_RS34985	0.68	+0.4
1,182,114	+		QEN71_RS34985	0.68	-0.2
1,182,114	+		QEN71_RS34985	0.68	+0.5
1,182,115	-		QEN71_RS34985	0.69	+0.6
1,182,115	-		QEN71_RS34985	0.69	+0.4
1,182,115	-		QEN71_RS34985	0.69	-1.8
1,182,115	-		QEN71_RS34985	0.69	-0.2
1,182,115	-		QEN71_RS34985	0.69	-0.6
1,182,208	+				+1.6
1,182,208	+				-0.0
1,182,208	+				-1.8
1,182,208	+				+0.1
1,182,209	-				-0.0
1,182,209	-				-0.1
1,182,209	-				+0.1
1,182,209	-				-2.2
1,182,209	-				+0.3
1,182,209	-				+0.0
1,182,209	-				-2.3
1,182,209	-				+0.2
1,182,371	+				-0.2
1,182,372	-				-0.6
1,182,405	-				-0.4