Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33950 and QEN71_RS33955 are separated by 49 nucleotides QEN71_RS33955 and QEN71_RS33960 overlap by 13 nucleotides QEN71_RS33960 and QEN71_RS33965 are separated by 14 nucleotides
QEN71_RS33950: QEN71_RS33950 - type III glutamate--ammonia ligase, at 932,423 to 933,751
_RS33950
QEN71_RS33955: QEN71_RS33955 - amidophosphoribosyltransferase, at 933,801 to 934,709
_RS33955
QEN71_RS33960: QEN71_RS33960 - protein glxC, at 934,697 to 935,395
_RS33960
QEN71_RS33965: QEN71_RS33965 - FMN-binding glutamate synthase family protein, at 935,410 to 936,777
_RS33965
Position (kb) 934
935
936 Strain fitness (log2 ratio) -2
-1
0
1 at 933.699 kb on - strand at 933.699 kb on - strand at 933.734 kb on + strand at 933.734 kb on + strand at 933.735 kb on - strand at 933.780 kb on + strand at 933.797 kb on - strand at 933.820 kb on + strand at 933.966 kb on + strand, within QEN71_RS33955 at 933.967 kb on - strand, within QEN71_RS33955 at 934.176 kb on + strand, within QEN71_RS33955 at 934.176 kb on + strand, within QEN71_RS33955 at 934.177 kb on - strand, within QEN71_RS33955 at 934.513 kb on - strand, within QEN71_RS33955 at 934.692 kb on + strand at 934.692 kb on + strand at 934.692 kb on + strand at 934.692 kb on + strand at 934.692 kb on + strand at 934.692 kb on + strand at 934.692 kb on + strand at 934.693 kb on - strand at 934.693 kb on - strand at 934.693 kb on - strand at 934.693 kb on - strand at 934.693 kb on - strand at 934.697 kb on - strand at 934.697 kb on - strand at 934.974 kb on + strand, within QEN71_RS33960 at 934.974 kb on + strand, within QEN71_RS33960 at 934.975 kb on - strand, within QEN71_RS33960 at 934.975 kb on - strand, within QEN71_RS33960 at 935.183 kb on + strand, within QEN71_RS33960 at 935.184 kb on - strand, within QEN71_RS33960 at 935.198 kb on + strand, within QEN71_RS33960 at 935.198 kb on + strand, within QEN71_RS33960 at 935.198 kb on + strand, within QEN71_RS33960 at 935.198 kb on + strand, within QEN71_RS33960 at 935.198 kb on + strand, within QEN71_RS33960 at 935.198 kb on + strand, within QEN71_RS33960 at 935.199 kb on - strand, within QEN71_RS33960 at 935.199 kb on - strand, within QEN71_RS33960 at 935.360 kb on + strand at 935.360 kb on + strand at 935.361 kb on - strand at 935.361 kb on - strand at 935.361 kb on - strand at 935.426 kb on + strand at 935.427 kb on - strand at 935.485 kb on + strand at 935.485 kb on + strand at 935.515 kb on + strand at 935.516 kb on - strand at 935.597 kb on - strand, within QEN71_RS33965 at 935.833 kb on + strand, within QEN71_RS33965 at 935.834 kb on - strand, within QEN71_RS33965 at 935.834 kb on - strand, within QEN71_RS33965 at 936.104 kb on - strand, within QEN71_RS33965 at 936.104 kb on - strand, within QEN71_RS33965
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 933,699 - +1.3 933,699 - +1.6 933,734 + -0.6 933,734 + -0.2 933,735 - -0.4 933,780 + +0.5 933,797 - -0.9 933,820 + -0.2 933,966 + QEN71_RS33955 0.18 -1.2 933,967 - QEN71_RS33955 0.18 -0.7 934,176 + QEN71_RS33955 0.41 -0.8 934,176 + QEN71_RS33955 0.41 +0.6 934,177 - QEN71_RS33955 0.41 +0.2 934,513 - QEN71_RS33955 0.78 -0.5 934,692 + -0.4 934,692 + -0.5 934,692 + -0.4 934,692 + +0.3 934,692 + -0.8 934,692 + +1.0 934,692 + +0.1 934,693 - -0.2 934,693 - -0.1 934,693 - +0.3 934,693 - -0.7 934,693 - -0.1 934,697 - +0.6 934,697 - -0.4 934,974 + QEN71_RS33960 0.40 -0.7 934,974 + QEN71_RS33960 0.40 -0.5 934,975 - QEN71_RS33960 0.40 +0.4 934,975 - QEN71_RS33960 0.40 -0.4 935,183 + QEN71_RS33960 0.70 -1.7 935,184 - QEN71_RS33960 0.70 +0.6 935,198 + QEN71_RS33960 0.72 -0.5 935,198 + QEN71_RS33960 0.72 -2.2 935,198 + QEN71_RS33960 0.72 +0.4 935,198 + QEN71_RS33960 0.72 +1.0 935,198 + QEN71_RS33960 0.72 -0.6 935,198 + QEN71_RS33960 0.72 -0.9 935,199 - QEN71_RS33960 0.72 -0.6 935,199 - QEN71_RS33960 0.72 -1.6 935,360 + -0.5 935,360 + +0.8 935,361 - +0.5 935,361 - -0.1 935,361 - +0.0 935,426 + +0.4 935,427 - +1.4 935,485 + -0.3 935,485 + -1.0 935,515 + +0.9 935,516 - -0.4 935,597 - QEN71_RS33965 0.14 +0.2 935,833 + QEN71_RS33965 0.31 -0.4 935,834 - QEN71_RS33965 0.31 -0.7 935,834 - QEN71_RS33965 0.31 +0.5 936,104 - QEN71_RS33965 0.51 +0.8 936,104 - QEN71_RS33965 0.51 -0.5
Or see this region's nucleotide sequence