Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33905 and QEN71_RS33910 are separated by 57 nucleotides QEN71_RS33910 and QEN71_RS33915 are separated by 83 nucleotides QEN71_RS33915 and QEN71_RS33920 are separated by 122 nucleotides
QEN71_RS33905: QEN71_RS33905 - hypothetical protein, at 923,690 to 924,118
_RS33905
QEN71_RS33910: QEN71_RS33910 - hypothetical protein, at 924,176 to 924,421
_RS33910
QEN71_RS33915: QEN71_RS33915 - two-component system response regulator NarL, at 924,505 to 925,164
_RS33915
QEN71_RS33920: QEN71_RS33920 - XRE family transcriptional regulator, at 925,287 to 925,928
_RS33920
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 923.647 kb on - strand at 923.849 kb on + strand, within QEN71_RS33905 at 923.849 kb on + strand, within QEN71_RS33905 at 923.850 kb on - strand, within QEN71_RS33905 at 923.883 kb on - strand, within QEN71_RS33905 at 923.918 kb on + strand, within QEN71_RS33905 at 923.918 kb on + strand, within QEN71_RS33905 at 923.918 kb on + strand, within QEN71_RS33905 at 923.919 kb on - strand, within QEN71_RS33905 at 923.919 kb on - strand, within QEN71_RS33905 at 923.921 kb on - strand, within QEN71_RS33905 at 923.921 kb on - strand, within QEN71_RS33905 at 923.921 kb on - strand, within QEN71_RS33905 at 923.921 kb on - strand, within QEN71_RS33905 at 924.426 kb on + strand at 924.490 kb on + strand at 924.602 kb on + strand, within QEN71_RS33915 at 924.603 kb on - strand, within QEN71_RS33915 at 924.814 kb on + strand, within QEN71_RS33915 at 924.992 kb on - strand, within QEN71_RS33915 at 925.083 kb on + strand, within QEN71_RS33915 at 925.083 kb on + strand, within QEN71_RS33915 at 925.209 kb on - strand at 925.211 kb on + strand at 925.211 kb on + strand at 925.632 kb on - strand, within QEN71_RS33920 at 925.635 kb on + strand, within QEN71_RS33920 at 925.636 kb on - strand, within QEN71_RS33920 at 925.636 kb on - strand, within QEN71_RS33920 at 925.752 kb on + strand, within QEN71_RS33920 at 925.752 kb on + strand, within QEN71_RS33920 at 925.752 kb on + strand, within QEN71_RS33920 at 925.752 kb on + strand, within QEN71_RS33920 at 925.752 kb on + strand, within QEN71_RS33920 at 925.752 kb on + strand, within QEN71_RS33920 at 925.753 kb on - strand, within QEN71_RS33920 at 925.753 kb on - strand, within QEN71_RS33920 at 925.753 kb on - strand, within QEN71_RS33920 at 925.753 kb on - strand, within QEN71_RS33920 at 925.753 kb on - strand, within QEN71_RS33920 at 925.798 kb on - strand, within QEN71_RS33920 at 925.798 kb on - strand, within QEN71_RS33920 at 926.070 kb on - strand at 926.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 923,647 - -1.4 923,849 + QEN71_RS33905 0.37 +0.6 923,849 + QEN71_RS33905 0.37 -0.3 923,850 - QEN71_RS33905 0.37 +0.3 923,883 - QEN71_RS33905 0.45 +1.3 923,918 + QEN71_RS33905 0.53 +0.7 923,918 + QEN71_RS33905 0.53 +2.0 923,918 + QEN71_RS33905 0.53 -0.1 923,919 - QEN71_RS33905 0.53 -1.7 923,919 - QEN71_RS33905 0.53 +1.6 923,921 - QEN71_RS33905 0.54 +0.3 923,921 - QEN71_RS33905 0.54 +0.8 923,921 - QEN71_RS33905 0.54 +0.1 923,921 - QEN71_RS33905 0.54 -0.2 924,426 + -0.2 924,490 + -0.7 924,602 + QEN71_RS33915 0.15 -0.2 924,603 - QEN71_RS33915 0.15 -1.6 924,814 + QEN71_RS33915 0.47 +2.1 924,992 - QEN71_RS33915 0.74 -0.5 925,083 + QEN71_RS33915 0.88 +0.4 925,083 + QEN71_RS33915 0.88 -0.1 925,209 - +0.3 925,211 + +0.1 925,211 + -0.2 925,632 - QEN71_RS33920 0.54 +0.0 925,635 + QEN71_RS33920 0.54 -0.7 925,636 - QEN71_RS33920 0.54 -0.6 925,636 - QEN71_RS33920 0.54 -0.9 925,752 + QEN71_RS33920 0.72 +0.6 925,752 + QEN71_RS33920 0.72 -0.8 925,752 + QEN71_RS33920 0.72 +0.3 925,752 + QEN71_RS33920 0.72 -0.6 925,752 + QEN71_RS33920 0.72 -0.7 925,752 + QEN71_RS33920 0.72 -1.1 925,753 - QEN71_RS33920 0.73 -0.5 925,753 - QEN71_RS33920 0.73 -2.7 925,753 - QEN71_RS33920 0.73 +0.1 925,753 - QEN71_RS33920 0.73 -1.3 925,753 - QEN71_RS33920 0.73 +0.4 925,798 - QEN71_RS33920 0.80 +0.6 925,798 - QEN71_RS33920 0.80 -1.7 926,070 - +2.4 926,074 - +0.2
Or see this region's nucleotide sequence