Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31900 and QEN71_RS31905 overlap by 4 nucleotides QEN71_RS31905 and QEN71_RS31910 overlap by 4 nucleotides QEN71_RS31910 and QEN71_RS31915 overlap by 4 nucleotides QEN71_RS31915 and QEN71_RS31920 overlap by 22 nucleotides
QEN71_RS31900: QEN71_RS31900 - ABC transporter permease, at 509,591 to 510,547
_RS31900
QEN71_RS31905: QEN71_RS31905 - ABC transporter permease, at 510,544 to 511,503
_RS31905
QEN71_RS31910: QEN71_RS31910 - ABC transporter ATP-binding protein, at 511,500 to 513,329
_RS31910
QEN71_RS31915: QEN71_RS31915 - (2Fe-2S)-binding protein, at 513,326 to 513,646
_RS31915
QEN71_RS31920: QEN71_RS31920 - NAD(P)/FAD-dependent oxidoreductase, at 513,625 to 515,064
_RS31920
Position (kb) 511
512
513
514 Strain fitness (log2 ratio) -1
0
1 at 510.775 kb on + strand, within QEN71_RS31905 at 510.775 kb on + strand, within QEN71_RS31905 at 510.776 kb on - strand, within QEN71_RS31905 at 510.776 kb on - strand, within QEN71_RS31905 at 510.817 kb on + strand, within QEN71_RS31905 at 510.818 kb on - strand, within QEN71_RS31905 at 510.818 kb on - strand, within QEN71_RS31905 at 510.892 kb on + strand, within QEN71_RS31905 at 511.089 kb on + strand, within QEN71_RS31905 at 511.168 kb on + strand, within QEN71_RS31905 at 511.207 kb on + strand, within QEN71_RS31905 at 511.209 kb on + strand, within QEN71_RS31905 at 511.944 kb on - strand, within QEN71_RS31910 at 512.127 kb on + strand, within QEN71_RS31910 at 512.128 kb on - strand, within QEN71_RS31910 at 512.247 kb on + strand, within QEN71_RS31910 at 512.248 kb on - strand, within QEN71_RS31910 at 512.390 kb on - strand, within QEN71_RS31910 at 512.578 kb on - strand, within QEN71_RS31910 at 512.670 kb on + strand, within QEN71_RS31910 at 512.929 kb on - strand, within QEN71_RS31910 at 512.929 kb on - strand, within QEN71_RS31910 at 512.992 kb on - strand, within QEN71_RS31910 at 512.992 kb on - strand, within QEN71_RS31910 at 513.054 kb on + strand, within QEN71_RS31910 at 513.624 kb on + strand at 513.625 kb on - strand at 513.769 kb on + strand, within QEN71_RS31920 at 513.814 kb on + strand, within QEN71_RS31920 at 513.883 kb on + strand, within QEN71_RS31920 at 513.936 kb on - strand, within QEN71_RS31920 at 514.129 kb on + strand, within QEN71_RS31920 at 514.130 kb on - strand, within QEN71_RS31920 at 514.130 kb on - strand, within QEN71_RS31920
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 510,775 + QEN71_RS31905 0.24 +0.4 510,775 + QEN71_RS31905 0.24 -0.1 510,776 - QEN71_RS31905 0.24 +0.4 510,776 - QEN71_RS31905 0.24 +0.0 510,817 + QEN71_RS31905 0.28 -0.8 510,818 - QEN71_RS31905 0.29 +0.6 510,818 - QEN71_RS31905 0.29 -0.0 510,892 + QEN71_RS31905 0.36 +1.6 511,089 + QEN71_RS31905 0.57 -0.9 511,168 + QEN71_RS31905 0.65 -0.3 511,207 + QEN71_RS31905 0.69 +0.5 511,209 + QEN71_RS31905 0.69 -1.4 511,944 - QEN71_RS31910 0.24 +1.2 512,127 + QEN71_RS31910 0.34 -0.3 512,128 - QEN71_RS31910 0.34 +0.1 512,247 + QEN71_RS31910 0.41 -1.1 512,248 - QEN71_RS31910 0.41 +0.2 512,390 - QEN71_RS31910 0.49 -0.8 512,578 - QEN71_RS31910 0.59 -0.1 512,670 + QEN71_RS31910 0.64 -1.5 512,929 - QEN71_RS31910 0.78 -0.0 512,929 - QEN71_RS31910 0.78 -0.9 512,992 - QEN71_RS31910 0.82 +0.4 512,992 - QEN71_RS31910 0.82 +0.4 513,054 + QEN71_RS31910 0.85 -0.2 513,624 + -1.0 513,625 - +0.2 513,769 + QEN71_RS31920 0.10 +0.5 513,814 + QEN71_RS31920 0.13 -1.3 513,883 + QEN71_RS31920 0.18 +0.3 513,936 - QEN71_RS31920 0.22 +0.5 514,129 + QEN71_RS31920 0.35 -1.2 514,130 - QEN71_RS31920 0.35 -0.1 514,130 - QEN71_RS31920 0.35 +1.2
Or see this region's nucleotide sequence