Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31210 and QEN71_RS31215 are separated by 434 nucleotides QEN71_RS31215 and QEN71_RS31220 overlap by 4 nucleotides QEN71_RS31220 and QEN71_RS31225 are separated by 6 nucleotides QEN71_RS31225 and QEN71_RS31230 are separated by 237 nucleotides
QEN71_RS31210: QEN71_RS31210 - hypothetical protein, at 353,944 to 354,780
_RS31210
QEN71_RS31215: QEN71_RS31215 - flagellar transcriptional regulator FlhD, at 355,215 to 355,535
_RS31215
QEN71_RS31220: QEN71_RS31220 - flagellar transcriptional regulator FlhC, at 355,532 to 356,128
_RS31220
QEN71_RS31225: QEN71_RS31225 - NUDIX domain-containing protein, at 356,135 to 356,503
_RS31225
QEN71_RS31230: QEN71_RS31230 - CHAD domain-containing protein, at 356,741 to 357,652
_RS31230
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.635 kb on + strand, within QEN71_RS31210 at 354.635 kb on + strand, within QEN71_RS31210 at 354.636 kb on - strand, within QEN71_RS31210 at 354.636 kb on - strand, within QEN71_RS31210 at 354.767 kb on + strand at 354.767 kb on + strand at 354.768 kb on - strand at 354.768 kb on - strand at 354.799 kb on - strand at 354.799 kb on - strand at 354.799 kb on - strand at 354.853 kb on + strand at 354.854 kb on - strand at 354.854 kb on - strand at 354.854 kb on - strand at 354.857 kb on - strand at 354.870 kb on + strand at 354.871 kb on - strand at 354.879 kb on + strand at 354.923 kb on + strand at 354.924 kb on - strand at 354.924 kb on - strand at 355.022 kb on + strand at 355.022 kb on + strand at 355.022 kb on + strand at 355.023 kb on - strand at 355.023 kb on - strand at 355.046 kb on + strand at 355.047 kb on - strand at 355.079 kb on + strand at 355.079 kb on + strand at 355.080 kb on - strand at 355.159 kb on + strand at 355.235 kb on - strand at 355.235 kb on - strand at 355.256 kb on + strand, within QEN71_RS31215 at 355.256 kb on + strand, within QEN71_RS31215 at 355.266 kb on + strand, within QEN71_RS31215 at 355.677 kb on - strand, within QEN71_RS31220 at 355.736 kb on + strand, within QEN71_RS31220 at 355.736 kb on + strand, within QEN71_RS31220 at 355.756 kb on + strand, within QEN71_RS31220 at 355.784 kb on + strand, within QEN71_RS31220 at 355.784 kb on + strand, within QEN71_RS31220 at 355.784 kb on + strand, within QEN71_RS31220 at 355.851 kb on - strand, within QEN71_RS31220 at 355.987 kb on + strand, within QEN71_RS31220 at 355.987 kb on + strand, within QEN71_RS31220 at 355.987 kb on + strand, within QEN71_RS31220 at 356.022 kb on + strand, within QEN71_RS31220 at 356.022 kb on + strand, within QEN71_RS31220 at 356.022 kb on + strand, within QEN71_RS31220 at 356.022 kb on + strand, within QEN71_RS31220 at 356.022 kb on + strand, within QEN71_RS31220 at 356.023 kb on - strand, within QEN71_RS31220 at 356.023 kb on - strand, within QEN71_RS31220 at 356.136 kb on + strand at 356.136 kb on + strand at 356.137 kb on - strand at 356.137 kb on - strand at 356.137 kb on - strand at 356.348 kb on + strand, within QEN71_RS31225 at 356.349 kb on - strand, within QEN71_RS31225 at 356.349 kb on - strand, within QEN71_RS31225 at 356.349 kb on - strand, within QEN71_RS31225 at 356.484 kb on - strand at 356.514 kb on + strand at 356.514 kb on + strand at 356.514 kb on + strand at 356.515 kb on - strand at 356.515 kb on - strand at 356.518 kb on + strand at 356.518 kb on + strand at 356.518 kb on + strand at 356.518 kb on + strand at 356.518 kb on + strand at 356.518 kb on + strand at 356.518 kb on + strand at 356.519 kb on - strand at 356.519 kb on - strand at 356.519 kb on - strand at 356.519 kb on - strand at 356.519 kb on - strand at 356.519 kb on - strand at 356.568 kb on - strand at 356.590 kb on - strand at 356.628 kb on + strand at 356.981 kb on + strand, within QEN71_RS31230 at 356.981 kb on + strand, within QEN71_RS31230 at 356.981 kb on + strand, within QEN71_RS31230 at 356.982 kb on - strand, within QEN71_RS31230 at 356.982 kb on - strand, within QEN71_RS31230 at 356.990 kb on + strand, within QEN71_RS31230 at 356.991 kb on - strand, within QEN71_RS31230
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 354,635 + QEN71_RS31210 0.83 -1.0 354,635 + QEN71_RS31210 0.83 +0.2 354,636 - QEN71_RS31210 0.83 -1.3 354,636 - QEN71_RS31210 0.83 -0.4 354,767 + -0.4 354,767 + +0.8 354,768 - +0.8 354,768 - -0.7 354,799 - +1.0 354,799 - +0.2 354,799 - +0.4 354,853 + -0.5 354,854 - +0.2 354,854 - +0.4 354,854 - +0.1 354,857 - -0.4 354,870 + -0.4 354,871 - +0.1 354,879 + -0.5 354,923 + -0.2 354,924 - +0.0 354,924 - +0.3 355,022 + +0.3 355,022 + -1.3 355,022 + +0.9 355,023 - -0.2 355,023 - +0.5 355,046 + +0.1 355,047 - +0.4 355,079 + +0.1 355,079 + -0.3 355,080 - +0.9 355,159 + -0.1 355,235 - +0.4 355,235 - +0.7 355,256 + QEN71_RS31215 0.13 -0.9 355,256 + QEN71_RS31215 0.13 -0.2 355,266 + QEN71_RS31215 0.16 -0.3 355,677 - QEN71_RS31220 0.24 -0.2 355,736 + QEN71_RS31220 0.34 +0.6 355,736 + QEN71_RS31220 0.34 +0.1 355,756 + QEN71_RS31220 0.38 -0.9 355,784 + QEN71_RS31220 0.42 +0.5 355,784 + QEN71_RS31220 0.42 +0.0 355,784 + QEN71_RS31220 0.42 -0.5 355,851 - QEN71_RS31220 0.53 +0.1 355,987 + QEN71_RS31220 0.76 -0.1 355,987 + QEN71_RS31220 0.76 +2.2 355,987 + QEN71_RS31220 0.76 -0.2 356,022 + QEN71_RS31220 0.82 -0.5 356,022 + QEN71_RS31220 0.82 +0.0 356,022 + QEN71_RS31220 0.82 -0.9 356,022 + QEN71_RS31220 0.82 -0.4 356,022 + QEN71_RS31220 0.82 +0.9 356,023 - QEN71_RS31220 0.82 -0.7 356,023 - QEN71_RS31220 0.82 -0.9 356,136 + -1.1 356,136 + +0.2 356,137 - +0.7 356,137 - -0.1 356,137 - -1.6 356,348 + QEN71_RS31225 0.58 -1.6 356,349 - QEN71_RS31225 0.58 +0.3 356,349 - QEN71_RS31225 0.58 -0.1 356,349 - QEN71_RS31225 0.58 -0.6 356,484 - -0.3 356,514 + +0.2 356,514 + +1.3 356,514 + +1.2 356,515 - -0.7 356,515 - +0.3 356,518 + +0.1 356,518 + -0.6 356,518 + +0.0 356,518 + -0.1 356,518 + +2.2 356,518 + +0.1 356,518 + -1.1 356,519 - +0.4 356,519 - -1.0 356,519 - -0.7 356,519 - +0.4 356,519 - +1.2 356,519 - +1.2 356,568 - -0.1 356,590 - -0.1 356,628 + -0.3 356,981 + QEN71_RS31230 0.26 +0.9 356,981 + QEN71_RS31230 0.26 -2.8 356,981 + QEN71_RS31230 0.26 +0.6 356,982 - QEN71_RS31230 0.26 -0.7 356,982 - QEN71_RS31230 0.26 +0.4 356,990 + QEN71_RS31230 0.27 -1.9 356,991 - QEN71_RS31230 0.27 +0.2
Or see this region's nucleotide sequence