Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31200 and QEN71_RS31205 are separated by 50 nucleotides QEN71_RS31205 and QEN71_RS31210 are separated by 70 nucleotides QEN71_RS31210 and QEN71_RS31215 are separated by 434 nucleotides QEN71_RS31215 and QEN71_RS31220 overlap by 4 nucleotides
QEN71_RS31200: QEN71_RS31200 - M81 family metallopeptidase, at 351,775 to 353,307
_RS31200
QEN71_RS31205: QEN71_RS31205 - NUDIX hydrolase, at 353,358 to 353,873
_RS31205
QEN71_RS31210: QEN71_RS31210 - hypothetical protein, at 353,944 to 354,780
_RS31210
QEN71_RS31215: QEN71_RS31215 - flagellar transcriptional regulator FlhD, at 355,215 to 355,535
_RS31215
QEN71_RS31220: QEN71_RS31220 - flagellar transcriptional regulator FlhC, at 355,532 to 356,128
_RS31220
Position (kb) 353
354
355 Strain fitness (log2 ratio) -2
-1
0
1 at 353.499 kb on + strand, within QEN71_RS31205 at 353.499 kb on + strand, within QEN71_RS31205 at 353.499 kb on + strand, within QEN71_RS31205 at 353.500 kb on - strand, within QEN71_RS31205 at 353.667 kb on + strand, within QEN71_RS31205 at 353.668 kb on - strand, within QEN71_RS31205 at 353.668 kb on - strand, within QEN71_RS31205 at 353.668 kb on - strand, within QEN71_RS31205 at 353.668 kb on - strand, within QEN71_RS31205 at 354.005 kb on + strand at 354.317 kb on + strand, within QEN71_RS31210 at 354.317 kb on + strand, within QEN71_RS31210 at 354.318 kb on - strand, within QEN71_RS31210 at 354.341 kb on + strand, within QEN71_RS31210 at 354.341 kb on + strand, within QEN71_RS31210 at 354.342 kb on - strand, within QEN71_RS31210 at 354.342 kb on - strand, within QEN71_RS31210 at 354.522 kb on + strand, within QEN71_RS31210 at 354.635 kb on + strand, within QEN71_RS31210 at 354.635 kb on + strand, within QEN71_RS31210 at 354.636 kb on - strand, within QEN71_RS31210 at 354.636 kb on - strand, within QEN71_RS31210 at 354.767 kb on + strand at 354.767 kb on + strand at 354.768 kb on - strand at 354.768 kb on - strand at 354.799 kb on - strand at 354.799 kb on - strand at 354.799 kb on - strand at 354.853 kb on + strand at 354.854 kb on - strand at 354.854 kb on - strand at 354.854 kb on - strand at 354.857 kb on - strand at 354.870 kb on + strand at 354.871 kb on - strand at 354.879 kb on + strand at 354.923 kb on + strand at 354.924 kb on - strand at 354.924 kb on - strand at 355.022 kb on + strand at 355.022 kb on + strand at 355.022 kb on + strand at 355.023 kb on - strand at 355.023 kb on - strand at 355.046 kb on + strand at 355.047 kb on - strand at 355.079 kb on + strand at 355.079 kb on + strand at 355.080 kb on - strand at 355.159 kb on + strand at 355.235 kb on - strand at 355.235 kb on - strand at 355.256 kb on + strand, within QEN71_RS31215 at 355.256 kb on + strand, within QEN71_RS31215 at 355.266 kb on + strand, within QEN71_RS31215 at 355.677 kb on - strand, within QEN71_RS31220 at 355.736 kb on + strand, within QEN71_RS31220 at 355.736 kb on + strand, within QEN71_RS31220 at 355.756 kb on + strand, within QEN71_RS31220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 353,499 + QEN71_RS31205 0.27 -0.6 353,499 + QEN71_RS31205 0.27 +0.8 353,499 + QEN71_RS31205 0.27 -2.6 353,500 - QEN71_RS31205 0.28 +0.8 353,667 + QEN71_RS31205 0.60 -2.4 353,668 - QEN71_RS31205 0.60 -0.1 353,668 - QEN71_RS31205 0.60 +0.6 353,668 - QEN71_RS31205 0.60 +0.8 353,668 - QEN71_RS31205 0.60 +0.8 354,005 + -0.1 354,317 + QEN71_RS31210 0.45 -0.9 354,317 + QEN71_RS31210 0.45 -0.3 354,318 - QEN71_RS31210 0.45 -0.1 354,341 + QEN71_RS31210 0.47 -0.1 354,341 + QEN71_RS31210 0.47 +0.2 354,342 - QEN71_RS31210 0.48 -0.0 354,342 - QEN71_RS31210 0.48 -0.2 354,522 + QEN71_RS31210 0.69 -0.5 354,635 + QEN71_RS31210 0.83 -1.0 354,635 + QEN71_RS31210 0.83 +0.2 354,636 - QEN71_RS31210 0.83 -1.3 354,636 - QEN71_RS31210 0.83 -0.4 354,767 + -0.4 354,767 + +0.8 354,768 - +0.8 354,768 - -0.7 354,799 - +1.0 354,799 - +0.2 354,799 - +0.4 354,853 + -0.5 354,854 - +0.2 354,854 - +0.4 354,854 - +0.1 354,857 - -0.4 354,870 + -0.4 354,871 - +0.1 354,879 + -0.5 354,923 + -0.2 354,924 - +0.0 354,924 - +0.3 355,022 + +0.3 355,022 + -1.3 355,022 + +0.9 355,023 - -0.2 355,023 - +0.5 355,046 + +0.1 355,047 - +0.4 355,079 + +0.1 355,079 + -0.3 355,080 - +0.9 355,159 + -0.1 355,235 - +0.4 355,235 - +0.7 355,256 + QEN71_RS31215 0.13 -0.9 355,256 + QEN71_RS31215 0.13 -0.2 355,266 + QEN71_RS31215 0.16 -0.3 355,677 - QEN71_RS31220 0.24 -0.2 355,736 + QEN71_RS31220 0.34 +0.6 355,736 + QEN71_RS31220 0.34 +0.1 355,756 + QEN71_RS31220 0.38 -0.9
Or see this region's nucleotide sequence