Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30425 and QEN71_RS30430 are separated by 160 nucleotides QEN71_RS30430 and QEN71_RS30435 are separated by 22 nucleotides QEN71_RS30435 and QEN71_RS30440 are separated by 66 nucleotides
QEN71_RS30425: QEN71_RS30425 - creatininase family protein, at 170,261 to 171,010
_RS30425
QEN71_RS30430: QEN71_RS30430 - nitronate monooxygenase, at 171,171 to 172,271
_RS30430
QEN71_RS30435: QEN71_RS30435 - MOSC domain-containing protein, at 172,294 to 172,959
_RS30435
QEN71_RS30440: QEN71_RS30440 - 4-oxalocrotonate tautomerase family protein, at 173,026 to 173,262
_RS30440
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.180 kb on + strand at 170.181 kb on - strand at 170.181 kb on - strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.268 kb on + strand at 170.269 kb on - strand at 170.269 kb on - strand at 170.269 kb on - strand at 170.269 kb on - strand at 170.269 kb on - strand at 170.274 kb on + strand at 170.274 kb on + strand at 170.275 kb on - strand at 170.515 kb on + strand, within QEN71_RS30425 at 170.515 kb on + strand, within QEN71_RS30425 at 170.516 kb on - strand, within QEN71_RS30425 at 170.633 kb on + strand, within QEN71_RS30425 at 170.633 kb on + strand, within QEN71_RS30425 at 170.633 kb on + strand, within QEN71_RS30425 at 170.634 kb on - strand, within QEN71_RS30425 at 170.634 kb on - strand, within QEN71_RS30425 at 170.634 kb on - strand, within QEN71_RS30425 at 170.819 kb on + strand, within QEN71_RS30425 at 170.820 kb on - strand, within QEN71_RS30425 at 171.008 kb on + strand at 171.008 kb on + strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.092 kb on + strand at 171.092 kb on + strand at 171.092 kb on + strand at 171.092 kb on + strand at 171.092 kb on + strand at 171.093 kb on - strand at 171.093 kb on - strand at 171.093 kb on - strand at 171.093 kb on - strand at 171.093 kb on - strand at 171.093 kb on - strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.096 kb on + strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.097 kb on - strand at 171.474 kb on + strand, within QEN71_RS30430 at 171.510 kb on + strand, within QEN71_RS30430 at 171.626 kb on + strand, within QEN71_RS30430 at 171.626 kb on + strand, within QEN71_RS30430 at 172.093 kb on - strand, within QEN71_RS30430 at 172.093 kb on - strand, within QEN71_RS30430 at 172.187 kb on + strand at 172.187 kb on + strand at 172.188 kb on - strand at 172.269 kb on + strand at 172.288 kb on + strand at 172.289 kb on - strand at 172.289 kb on - strand at 172.379 kb on + strand, within QEN71_RS30435 at 172.521 kb on + strand, within QEN71_RS30435 at 172.555 kb on + strand, within QEN71_RS30435 at 172.556 kb on - strand, within QEN71_RS30435 at 172.561 kb on + strand, within QEN71_RS30435 at 172.576 kb on + strand, within QEN71_RS30435 at 172.577 kb on - strand, within QEN71_RS30435 at 172.577 kb on - strand, within QEN71_RS30435 at 172.577 kb on - strand, within QEN71_RS30435 at 172.691 kb on + strand, within QEN71_RS30435 at 172.691 kb on + strand, within QEN71_RS30435 at 172.691 kb on + strand, within QEN71_RS30435 at 172.692 kb on - strand, within QEN71_RS30435 at 172.692 kb on - strand, within QEN71_RS30435 at 172.692 kb on - strand, within QEN71_RS30435 at 172.704 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.803 kb on + strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.804 kb on - strand, within QEN71_RS30435 at 172.807 kb on + strand, within QEN71_RS30435 at 172.807 kb on + strand, within QEN71_RS30435 at 172.808 kb on - strand, within QEN71_RS30435 at 172.808 kb on - strand, within QEN71_RS30435 at 172.808 kb on - strand, within QEN71_RS30435 at 172.808 kb on - strand, within QEN71_RS30435 at 172.832 kb on - strand, within QEN71_RS30435 at 172.832 kb on - strand, within QEN71_RS30435 at 172.857 kb on + strand, within QEN71_RS30435 at 172.857 kb on + strand, within QEN71_RS30435 at 172.876 kb on - strand, within QEN71_RS30435 at 172.957 kb on + strand at 172.958 kb on - strand at 172.958 kb on - strand at 172.958 kb on - strand at 173.003 kb on + strand at 173.003 kb on + strand at 173.004 kb on - strand at 173.004 kb on - strand at 173.004 kb on - strand at 173.004 kb on - strand at 173.004 kb on - strand at 173.004 kb on - strand at 173.004 kb on - strand at 173.256 kb on + strand at 173.256 kb on + strand at 173.256 kb on + strand at 173.257 kb on - strand at 173.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 170,180 + -0.7 170,181 - -0.1 170,181 - -1.8 170,268 + +0.3 170,268 + -0.7 170,268 + +0.1 170,268 + -0.7 170,268 + +0.8 170,268 + +1.9 170,268 + -0.2 170,268 + -0.1 170,269 - +0.4 170,269 - +0.5 170,269 - -1.0 170,269 - +0.3 170,269 - -0.2 170,274 + +1.9 170,274 + +0.7 170,275 - +0.4 170,515 + QEN71_RS30425 0.34 -0.8 170,515 + QEN71_RS30425 0.34 +0.7 170,516 - QEN71_RS30425 0.34 -1.3 170,633 + QEN71_RS30425 0.50 -0.6 170,633 + QEN71_RS30425 0.50 -1.2 170,633 + QEN71_RS30425 0.50 -0.1 170,634 - QEN71_RS30425 0.50 -0.8 170,634 - QEN71_RS30425 0.50 -0.6 170,634 - QEN71_RS30425 0.50 +0.1 170,819 + QEN71_RS30425 0.74 +0.0 170,820 - QEN71_RS30425 0.75 -0.2 171,008 + -0.3 171,008 + +0.7 171,009 - -0.1 171,009 - +1.9 171,009 - -0.1 171,009 - -1.4 171,092 + -1.9 171,092 + +0.5 171,092 + +0.3 171,092 + -0.4 171,092 + +0.1 171,093 - +0.8 171,093 - +0.2 171,093 - +0.7 171,093 - -0.6 171,093 - -0.6 171,093 - -0.9 171,096 + +1.9 171,096 + +1.6 171,096 + +0.4 171,096 + +1.0 171,096 + -0.2 171,096 + -1.0 171,096 + +0.6 171,096 + +1.2 171,096 + +0.0 171,096 + -0.6 171,096 + -0.5 171,096 + -0.1 171,096 + -0.2 171,096 + -0.2 171,096 + -1.2 171,096 + -0.2 171,096 + +1.0 171,097 - +0.9 171,097 - +1.0 171,097 - +0.0 171,097 - +1.2 171,097 - -0.2 171,097 - +0.1 171,097 - +1.9 171,097 - -0.6 171,097 - +0.1 171,097 - -1.1 171,097 - +0.4 171,097 - +0.6 171,097 - +0.6 171,097 - +1.5 171,097 - -1.4 171,097 - +0.8 171,097 - -0.2 171,097 - +0.1 171,474 + QEN71_RS30430 0.28 -0.0 171,510 + QEN71_RS30430 0.31 +0.5 171,626 + QEN71_RS30430 0.41 -0.7 171,626 + QEN71_RS30430 0.41 -0.8 172,093 - QEN71_RS30430 0.84 -0.3 172,093 - QEN71_RS30430 0.84 +0.9 172,187 + -1.4 172,187 + -0.5 172,188 - -0.6 172,269 + +0.1 172,288 + -0.6 172,289 - +0.1 172,289 - +1.1 172,379 + QEN71_RS30435 0.13 -0.1 172,521 + QEN71_RS30435 0.34 -0.9 172,555 + QEN71_RS30435 0.39 +0.4 172,556 - QEN71_RS30435 0.39 +1.3 172,561 + QEN71_RS30435 0.40 +0.6 172,576 + QEN71_RS30435 0.42 +0.2 172,577 - QEN71_RS30435 0.42 -0.9 172,577 - QEN71_RS30435 0.42 +0.2 172,577 - QEN71_RS30435 0.42 +0.1 172,691 + QEN71_RS30435 0.60 +1.7 172,691 + QEN71_RS30435 0.60 -0.1 172,691 + QEN71_RS30435 0.60 -0.8 172,692 - QEN71_RS30435 0.60 +0.2 172,692 - QEN71_RS30435 0.60 -1.1 172,692 - QEN71_RS30435 0.60 -0.1 172,704 + QEN71_RS30435 0.62 +0.4 172,803 + QEN71_RS30435 0.76 +0.4 172,803 + QEN71_RS30435 0.76 -0.6 172,803 + QEN71_RS30435 0.76 +0.0 172,803 + QEN71_RS30435 0.76 +0.5 172,803 + QEN71_RS30435 0.76 -1.0 172,803 + QEN71_RS30435 0.76 -0.2 172,803 + QEN71_RS30435 0.76 -0.2 172,803 + QEN71_RS30435 0.76 +0.3 172,803 + QEN71_RS30435 0.76 -0.4 172,803 + QEN71_RS30435 0.76 -0.7 172,803 + QEN71_RS30435 0.76 -1.3 172,803 + QEN71_RS30435 0.76 -1.4 172,804 - QEN71_RS30435 0.77 -0.9 172,804 - QEN71_RS30435 0.77 +0.6 172,804 - QEN71_RS30435 0.77 -0.4 172,804 - QEN71_RS30435 0.77 +0.5 172,804 - QEN71_RS30435 0.77 -0.7 172,804 - QEN71_RS30435 0.77 -0.3 172,804 - QEN71_RS30435 0.77 -0.1 172,804 - QEN71_RS30435 0.77 +0.7 172,804 - QEN71_RS30435 0.77 +2.5 172,804 - QEN71_RS30435 0.77 +1.2 172,804 - QEN71_RS30435 0.77 +1.5 172,804 - QEN71_RS30435 0.77 +2.7 172,807 + QEN71_RS30435 0.77 +0.5 172,807 + QEN71_RS30435 0.77 -0.7 172,808 - QEN71_RS30435 0.77 -0.0 172,808 - QEN71_RS30435 0.77 -0.4 172,808 - QEN71_RS30435 0.77 +0.4 172,808 - QEN71_RS30435 0.77 -1.8 172,832 - QEN71_RS30435 0.81 -0.4 172,832 - QEN71_RS30435 0.81 +0.2 172,857 + QEN71_RS30435 0.85 +0.4 172,857 + QEN71_RS30435 0.85 +0.5 172,876 - QEN71_RS30435 0.87 -1.0 172,957 + +1.3 172,958 - -0.4 172,958 - +0.3 172,958 - -0.7 173,003 + +0.2 173,003 + -1.2 173,004 - -2.3 173,004 - +0.2 173,004 - -1.1 173,004 - -1.1 173,004 - +0.9 173,004 - +0.1 173,004 - -0.4 173,256 + -1.3 173,256 + -1.0 173,256 + -0.4 173,257 - -1.3 173,257 - +0.2
Or see this region's nucleotide sequence