Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29040

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
6,436,649	+		QEN71_RS29035	0.77	+0.5
6,436,649	+		QEN71_RS29035	0.77	+0.7
6,436,649	+		QEN71_RS29035	0.77	+0.1
6,436,650	-		QEN71_RS29035	0.77	+0.8
6,436,650	-		QEN71_RS29035	0.77	+2.4
6,436,650	-		QEN71_RS29035	0.77	+0.9
6,436,650	-		QEN71_RS29035	0.77	+1.2
6,436,665	-		QEN71_RS29035	0.82	+0.6
6,436,665	-		QEN71_RS29035	0.82	+0.6
6,436,671	+		QEN71_RS29035	0.83	+0.3
6,436,671	+		QEN71_RS29035	0.83	+0.2
6,436,671	+		QEN71_RS29035	0.83	+0.6
6,436,671	+		QEN71_RS29035	0.83	-1.1
6,436,671	+		QEN71_RS29035	0.83	+0.3
6,436,671	+		QEN71_RS29035	0.83	+0.5
6,436,671	+		QEN71_RS29035	0.83	+1.2
6,436,671	+		QEN71_RS29035	0.83	+2.4
6,436,671	+		QEN71_RS29035	0.83	+1.9
6,436,672	-		QEN71_RS29035	0.84	-0.0
6,436,672	-		QEN71_RS29035	0.84	+2.1
6,436,672	-		QEN71_RS29035	0.84	+1.3
6,436,672	-		QEN71_RS29035	0.84	+0.9
6,436,672	-		QEN71_RS29035	0.84	+0.7
6,436,672	-		QEN71_RS29035	0.84	+0.3
6,436,672	-		QEN71_RS29035	0.84	+1.1
6,436,672	-		QEN71_RS29035	0.84	+0.8
6,436,672	-		QEN71_RS29035	0.84	+0.9
6,436,690	+		QEN71_RS29035	0.89	+0.5
6,436,691	-		QEN71_RS29035	0.90	+0.8
6,436,763	+				+0.5
6,436,763	+				+1.6
6,436,763	+				+0.7
6,436,764	-				+1.1
6,436,764	-				-1.4
6,436,810	+				+0.7
6,436,810	+				+0.6
6,436,810	+				+0.5
6,436,810	+				+0.8
6,436,810	+				+0.6
6,436,810	+				+0.7
6,436,811	-				-0.2
6,436,811	-				-0.0
6,436,811	-				-0.5
6,436,811	-				-1.4
6,436,816	+				+0.5
6,436,883	+				+1.0
6,436,884	-				-0.7
6,436,884	-				+0.2
6,436,884	-				+0.4
6,436,884	-				+0.3
6,436,884	-				+0.5
6,436,973	-				+1.8
6,437,011	+				-0.2
6,437,011	+				-0.1
6,437,011	+				-0.9
6,437,011	+				-1.2
6,437,012	-				-0.4
6,437,012	-				+0.5
6,437,012	-				-0.9
6,437,012	-				-0.0
6,437,012	-				+1.4
6,437,035	+				+0.2
6,437,035	+				+1.0
6,437,035	+				-1.4
6,437,035	+				-0.7
6,437,036	-				+1.7
6,437,036	-				-0.6
6,437,055	+				-0.3
6,437,055	+				+1.6
6,437,055	+				+0.8
6,437,055	+				-0.0
6,437,055	+				-0.1
6,437,055	+				+0.1
6,437,055	+				-0.7
6,437,056	-				+1.2
6,437,056	-				-0.6
6,437,056	-				-0.4
6,437,056	-				+0.1
6,437,056	-				+0.8
6,437,056	-				-0.5
6,437,056	-				+0.5
6,437,056	-				+0.4
6,437,056	-				+0.6
6,437,056	-				+0.3
6,437,056	-				-0.1
6,437,112	+				+1.4
6,437,112	+				+1.0
6,437,134	-				+0.7
6,437,173	+				-0.2
6,437,173	+				+1.8
6,437,173	+				+0.5
6,437,173	+				+1.4
6,437,173	+				-0.5
6,437,173	+				+0.1
6,437,173	+				-0.3
6,437,173	+				+0.7
6,437,174	-				-0.5
6,437,174	-				-0.2
6,437,174	-				+0.3
6,437,174	-				-0.3
6,437,174	-				+0.1
6,437,174	-				+0.9
6,437,174	-				+0.5
6,437,186	+				+0.4
6,437,186	+				+1.3
6,437,187	-				+0.6
6,437,187	-				+0.7
6,437,187	-				-0.1
6,437,187	-				+1.4
6,437,207	+				+0.0
6,437,207	+				+0.3
6,437,207	+				+0.7
6,437,207	+				+0.6
6,437,208	-				+0.1
6,437,208	-				+1.1
6,437,208	-				+1.1
6,437,208	-				-0.4
6,437,216	+				+1.2
6,437,216	+				-0.4
6,437,216	+				+1.2
6,437,216	+				+1.4
6,437,216	+				-0.2
6,437,216	+				+0.9
6,437,217	-				+0.9
6,437,231	+				+0.1
6,437,231	+				+0.0
6,437,232	-				+1.1
6,437,269	+				+0.4
6,437,269	+				+0.1
6,437,269	+				+0.5
6,437,269	+				+1.2
6,437,269	+				+1.2
6,437,269	+				+0.4
6,437,270	-				+0.6
6,437,270	-				-0.2
6,437,270	-				+0.3
6,437,270	-				-1.6
6,437,270	-				-0.5
6,437,385	+				+1.0
6,437,385	+				+0.4
6,437,385	+				-0.4
6,437,385	+				+0.6
6,437,385	+				+1.1
6,437,426	+				-0.2
6,437,426	+				+1.5
6,437,426	+				-0.5
6,437,426	+				-0.8
6,437,426	+				-0.2
6,437,427	-				+0.3
6,437,427	-				-1.2
6,437,427	-				+1.9
6,437,427	-				+0.1
6,437,436	+				+0.3
6,437,436	+				+0.9
6,437,436	+				-0.2
6,437,437	-				+0.2
6,437,437	-				-0.0
6,437,450	+				+1.1
6,437,451	-				+1.6
6,437,477	+				+0.7
6,437,477	+				+0.9
6,437,478	-				+0.8
6,437,478	-				-1.1
6,437,478	-				-0.0
6,437,687	+		QEN71_RS29040	0.27	-0.6
6,437,687	+		QEN71_RS29040	0.27	+0.3
6,437,687	+		QEN71_RS29040	0.27	+1.3
6,437,688	-		QEN71_RS29040	0.27	+1.2
6,437,688	-		QEN71_RS29040	0.27	+1.9
6,437,688	-		QEN71_RS29040	0.27	+0.6
6,437,688	-		QEN71_RS29040	0.27	+0.5
6,437,688	-		QEN71_RS29040	0.27	-1.4
6,437,688	-		QEN71_RS29040	0.27	+0.4
6,437,864	+		QEN71_RS29040	0.44	+1.9
6,437,865	-		QEN71_RS29040	0.44	-1.1
6,437,918	+		QEN71_RS29040	0.49	-1.1
6,437,918	+		QEN71_RS29040	0.49	-2.6
6,437,918	+		QEN71_RS29040	0.49	+0.8
6,437,918	+		QEN71_RS29040	0.49	-1.2
6,437,918	+		QEN71_RS29040	0.49	-0.2
6,437,919	-		QEN71_RS29040	0.49	-0.2
6,437,919	-		QEN71_RS29040	0.49	-0.9
6,437,919	-		QEN71_RS29040	0.49	+2.3
6,437,919	-		QEN71_RS29040	0.49	-0.5
6,437,919	-		QEN71_RS29040	0.49	-0.2
6,437,919	-		QEN71_RS29040	0.49	-1.5
6,437,919	-		QEN71_RS29040	0.49	+0.5
6,437,938	+		QEN71_RS29040	0.51	-0.1
6,437,938	+		QEN71_RS29040	0.51	+0.1
6,437,938	+		QEN71_RS29040	0.51	+0.2
6,437,939	-		QEN71_RS29040	0.51	-0.2
6,437,939	-		QEN71_RS29040	0.51	+1.1
6,437,939	-		QEN71_RS29040	0.51	-0.2
6,437,963	-		QEN71_RS29040	0.53	-2.5
6,438,038	+		QEN71_RS29040	0.60	+0.6
6,438,038	+		QEN71_RS29040	0.60	-0.2
6,438,038	+		QEN71_RS29040	0.60	+0.9
6,438,038	+		QEN71_RS29040	0.60	-1.4
6,438,038	+		QEN71_RS29040	0.60	-0.5
6,438,038	+		QEN71_RS29040	0.60	-0.0
6,438,039	-		QEN71_RS29040	0.60	+0.2
6,438,039	-		QEN71_RS29040	0.60	+1.1
6,438,039	-		QEN71_RS29040	0.60	-1.1
6,438,039	-		QEN71_RS29040	0.60	-0.6
6,438,039	-		QEN71_RS29040	0.60	+0.1
6,438,039	-		QEN71_RS29040	0.60	+0.0
6,438,272	+		QEN71_RS29040	0.82	+0.4
6,438,272	+		QEN71_RS29040	0.82	-0.5
6,438,272	+		QEN71_RS29040	0.82	+0.0
6,438,272	+		QEN71_RS29040	0.82	+0.1
6,438,272	+		QEN71_RS29040	0.82	-0.3
6,438,272	+		QEN71_RS29040	0.82	-0.8
6,438,272	+		QEN71_RS29040	0.82	-0.3
6,438,272	+		QEN71_RS29040	0.82	-1.2
6,438,272	+		QEN71_RS29040	0.82	-1.2
6,438,272	+		QEN71_RS29040	0.82	-0.3
6,438,273	-		QEN71_RS29040	0.82	-0.7
6,438,273	-		QEN71_RS29040	0.82	-0.9
6,438,273	-		QEN71_RS29040	0.82	+2.1
6,438,273	-		QEN71_RS29040	0.82	+0.0
6,438,273	-		QEN71_RS29040	0.82	+0.1
6,438,273	-		QEN71_RS29040	0.82	-1.1
6,438,316	+		QEN71_RS29040	0.86	-1.5
6,438,392	+				+1.7
6,438,392	+				-1.1
6,438,392	+				-0.2
6,438,393	-				+2.1
6,438,393	-				+0.6
6,438,393	-				-0.1
6,438,393	-				-0.2
6,438,393	-				+0.5
6,438,393	-				-0.5
6,438,393	-				+1.3
6,438,393	-				-0.9
6,438,404	+				-1.4
6,438,404	+				+0.6
6,438,404	+				-1.2
6,438,404	+				-0.2
6,438,404	+				+0.2
6,438,405	-				-0.9
6,438,405	-				+0.5
6,438,405	-				-1.2
6,438,405	-				-1.7
6,438,405	-				-2.0
6,438,405	-				+0.4
6,438,499	+				+1.1
6,438,499	+				-0.7
6,438,499	+				+0.2
6,438,499	+				+0.1
6,438,500	-				+0.2
6,438,500	-				-0.7
6,438,500	-				+1.4
6,438,500	-				-1.1
6,438,500	-				-0.6
6,438,512	+				+0.2
6,438,512	+				-0.3
6,438,512	+				-0.3
6,438,512	+				-0.1
6,438,513	-				+0.1
6,438,513	-				+0.4
6,438,513	-				-2.0
6,438,561	-				-1.2
6,438,656	-				+0.1
6,438,656	-				-0.4
6,438,669	-				+0.9
6,438,669	-				+1.1
6,438,669	-				-0.0
6,438,763	+				-1.1
6,438,763	+				+0.0
6,438,763	+				-0.8
6,438,764	-				-0.4
6,438,764	-				-2.0
6,438,767	+				-0.2
6,438,767	+				+0.1
6,438,767	+				-0.1
6,438,767	+				-0.1
6,438,767	+				+0.6
6,438,767	+				-1.5
6,438,768	-				-0.1
6,438,768	-				-1.6
6,438,768	-				+0.4
6,438,816	+		QEN71_RS29045	0.17	+1.3
6,438,816	+		QEN71_RS29045	0.17	-0.3
6,438,816	+		QEN71_RS29045	0.17	+0.6
6,438,816	+		QEN71_RS29045	0.17	+0.2
6,438,816	+		QEN71_RS29045	0.17	-0.9
6,438,817	-		QEN71_RS29045	0.17	-1.2
6,438,817	-		QEN71_RS29045	0.17	+0.9
6,438,866	+		QEN71_RS29045	0.33	+0.1
6,438,866	+		QEN71_RS29045	0.33	-0.6
6,438,866	+		QEN71_RS29045	0.33	-0.4
6,438,866	+		QEN71_RS29045	0.33	-1.5
6,438,866	+		QEN71_RS29045	0.33	-0.5
6,438,867	-		QEN71_RS29045	0.33	-1.4
6,438,867	-		QEN71_RS29045	0.33	-0.2
6,438,951	-		QEN71_RS29045	0.61	-0.9
6,438,951	-		QEN71_RS29045	0.61	-0.2
6,438,951	-		QEN71_RS29045	0.61	-0.4
6,439,058	+				-2.4
6,439,058	+				-0.1
6,439,058	+				+0.4
6,439,059	-				-1.0
6,439,059	-				+2.1
6,439,059	-				-1.3
6,439,059	-				-0.1
6,439,059	-				-0.1
6,439,059	-				-0.7
6,439,059	-				+0.1
6,439,145	+				-0.7
6,439,146	-				-0.7
6,439,174	+				-0.3
6,439,178	+				+0.6
6,439,181	-				+0.9
6,439,217	-				-1.4
6,439,226	+				+2.3
6,439,227	-				-0.4
6,439,265	+				+0.6
6,439,265	+				-1.7
6,439,265	+				+0.7
6,439,265	+				-0.5
6,439,266	-				-1.4
6,439,266	-				+0.9
6,439,280	+				+1.1
6,439,345	-				+0.6
6,439,410	+				+0.3
6,439,410	+				+0.0
6,439,413	+				+0.7
6,439,413	+				-2.3
6,439,413	+				-0.7
6,439,413	+				-0.9
6,439,413	+				-0.2
6,439,413	+				+0.2
6,439,413	+				-1.1
6,439,413	+				+0.6
6,439,413	+				-1.2
6,439,413	+				-0.1
6,439,414	-				+0.4
6,439,414	-				-0.5
6,439,414	-				-0.8
6,439,414	-				+0.5