Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27735

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
6,178,630	+		QEN71_RS27725	0.48	-1.2
6,178,669	+		QEN71_RS27725	0.54	-0.4
6,178,669	+		QEN71_RS27725	0.54	+0.1
6,178,669	+		QEN71_RS27725	0.54	-0.5
6,178,852	+		QEN71_RS27725	0.83	-0.8
6,178,852	+		QEN71_RS27725	0.83	-0.4
6,178,852	+		QEN71_RS27725	0.83	+0.8
6,178,852	+		QEN71_RS27725	0.83	+0.2
6,178,852	+		QEN71_RS27725	0.83	+0.5
6,178,852	+		QEN71_RS27725	0.83	-0.9
6,178,852	+		QEN71_RS27725	0.83	-1.9
6,178,852	+		QEN71_RS27725	0.83	-1.9
6,178,852	+		QEN71_RS27725	0.83	-1.4
6,178,853	-		QEN71_RS27725	0.83	-1.9
6,178,853	-		QEN71_RS27725	0.83	-0.2
6,178,853	-		QEN71_RS27725	0.83	-0.4
6,178,853	-		QEN71_RS27725	0.83	+1.5
6,178,870	+		QEN71_RS27725	0.86	-0.5
6,178,870	+		QEN71_RS27725	0.86	-0.9
6,178,870	+		QEN71_RS27725	0.86	-2.3
6,178,870	+		QEN71_RS27725	0.86	-2.1
6,178,870	+		QEN71_RS27725	0.86	-0.1
6,178,870	+		QEN71_RS27725	0.86	+0.5
6,178,871	-		QEN71_RS27725	0.86	-0.5
6,178,871	-		QEN71_RS27725	0.86	-2.3
6,178,952	+				-0.8
6,178,952	+				-0.0
6,178,957	+				-2.3
6,178,958	-				+0.1
6,179,116	+		QEN71_RS27730	0.23	-0.1
6,179,116	+		QEN71_RS27730	0.23	+0.1
6,179,117	-		QEN71_RS27730	0.23	+0.1
6,179,178	+		QEN71_RS27730	0.34	+0.4
6,179,178	+		QEN71_RS27730	0.34	-0.2
6,179,178	+		QEN71_RS27730	0.34	-0.8
6,179,179	-		QEN71_RS27730	0.34	+0.3
6,179,179	-		QEN71_RS27730	0.34	+0.1
6,179,258	-		QEN71_RS27730	0.48	+0.2
6,179,258	-		QEN71_RS27730	0.48	-1.1
6,179,344	+		QEN71_RS27730	0.63	+0.3
6,179,344	+		QEN71_RS27730	0.63	+0.5
6,179,344	+		QEN71_RS27730	0.63	-1.4
6,179,345	-		QEN71_RS27730	0.63	-0.8
6,179,345	-		QEN71_RS27730	0.63	-0.3
6,179,345	-		QEN71_RS27730	0.63	-0.1
6,179,345	-		QEN71_RS27730	0.63	-0.2
6,179,345	-		QEN71_RS27730	0.63	+0.1
6,179,383	+		QEN71_RS27730	0.69	+0.1
6,179,383	+		QEN71_RS27730	0.69	-0.5
6,179,383	+		QEN71_RS27730	0.69	+1.1
6,179,383	+		QEN71_RS27730	0.69	-0.3
6,179,383	+		QEN71_RS27730	0.69	-0.5
6,179,384	-		QEN71_RS27730	0.70	-0.3
6,179,384	-		QEN71_RS27730	0.70	-0.0
6,179,384	-		QEN71_RS27730	0.70	+0.5
6,179,384	-		QEN71_RS27730	0.70	+0.4
6,179,384	-		QEN71_RS27730	0.70	-1.0
6,179,384	-		QEN71_RS27730	0.70	+1.2
6,179,384	-		QEN71_RS27730	0.70	-0.5
6,179,384	-		QEN71_RS27730	0.70	+0.1
6,179,476	+		QEN71_RS27730	0.86	+0.6
6,179,476	+		QEN71_RS27730	0.86	-0.2
6,179,476	+		QEN71_RS27730	0.86	+0.8
6,179,476	+		QEN71_RS27730	0.86	-0.4
6,179,476	+		QEN71_RS27730	0.86	-0.6
6,179,476	+		QEN71_RS27730	0.86	-0.8
6,179,476	+		QEN71_RS27730	0.86	-1.5
6,179,476	+		QEN71_RS27730	0.86	-0.1
6,179,476	+		QEN71_RS27730	0.86	-1.3
6,179,476	+		QEN71_RS27730	0.86	+0.0
6,179,476	+		QEN71_RS27730	0.86	-0.2
6,179,477	-		QEN71_RS27730	0.86	+1.5
6,179,477	-		QEN71_RS27730	0.86	+0.7
6,179,477	-		QEN71_RS27730	0.86	+1.4
6,179,477	-		QEN71_RS27730	0.86	-0.2
6,179,477	-		QEN71_RS27730	0.86	-0.3
6,179,477	-		QEN71_RS27730	0.86	+1.1
6,179,477	-		QEN71_RS27730	0.86	-0.8
6,179,477	-		QEN71_RS27730	0.86	+0.4
6,179,477	-		QEN71_RS27730	0.86	-0.0
6,179,571	+				+0.2
6,179,571	+				+0.1
6,179,571	+				-0.2
6,179,571	+				+0.6
6,179,571	+				+0.1
6,179,571	+				+0.3
6,179,571	+				+0.1
6,179,572	-				+1.6
6,179,572	-				+0.1
6,179,572	-				-0.2
6,179,572	-				+0.1
6,179,572	-				+1.1
6,179,572	-				-2.1
6,179,576	+				-0.3
6,179,576	+				-0.3
6,179,577	-				-0.6
6,179,590	-				-0.8
6,179,590	-				-0.8
6,179,674	+		QEN71_RS27735	0.12	+0.1
6,179,674	+		QEN71_RS27735	0.12	+0.6
6,179,675	-		QEN71_RS27735	0.13	-0.2
6,179,675	-		QEN71_RS27735	0.13	-0.2
6,179,676	+		QEN71_RS27735	0.13	-0.1
6,179,676	+		QEN71_RS27735	0.13	+0.2
6,179,676	+		QEN71_RS27735	0.13	+0.2
6,179,676	+		QEN71_RS27735	0.13	+0.1
6,179,677	-		QEN71_RS27735	0.13	+0.6
6,179,677	-		QEN71_RS27735	0.13	+0.1
6,179,677	-		QEN71_RS27735	0.13	-1.9
6,179,677	-		QEN71_RS27735	0.13	-2.0
6,179,677	-		QEN71_RS27735	0.13	+1.1
6,179,677	-		QEN71_RS27735	0.13	+0.4
6,179,677	-		QEN71_RS27735	0.13	+0.8
6,179,809	+		QEN71_RS27735	0.29	+0.6
6,179,809	+		QEN71_RS27735	0.29	+1.8
6,179,809	+		QEN71_RS27735	0.29	-2.4
6,179,809	+		QEN71_RS27735	0.29	+0.1
6,179,810	-		QEN71_RS27735	0.29	-0.2
6,179,810	-		QEN71_RS27735	0.29	-0.0
6,179,919	+		QEN71_RS27735	0.42	-0.5
6,179,919	+		QEN71_RS27735	0.42	+2.1
6,179,920	-		QEN71_RS27735	0.42	+0.5
6,179,920	-		QEN71_RS27735	0.42	+0.7
6,179,920	-		QEN71_RS27735	0.42	-0.7
6,179,920	-		QEN71_RS27735	0.42	-0.2
6,180,038	+		QEN71_RS27735	0.56	+0.1
6,180,049	+		QEN71_RS27735	0.57	-0.9
6,180,050	-		QEN71_RS27735	0.57	-0.6
6,180,050	-		QEN71_RS27735	0.57	+0.6
6,180,050	-		QEN71_RS27735	0.57	-0.2
6,180,050	-		QEN71_RS27735	0.57	-0.4
6,180,061	+		QEN71_RS27735	0.59	-0.3
6,180,061	+		QEN71_RS27735	0.59	-0.6
6,180,061	+		QEN71_RS27735	0.59	-0.6
6,180,061	+		QEN71_RS27735	0.59	-0.8
6,180,061	+		QEN71_RS27735	0.59	+0.2
6,180,061	+		QEN71_RS27735	0.59	-0.0
6,180,061	+		QEN71_RS27735	0.59	+0.2
6,180,061	+		QEN71_RS27735	0.59	-0.3
6,180,061	+		QEN71_RS27735	0.59	-2.4
6,180,062	-		QEN71_RS27735	0.59	+0.3
6,180,062	-		QEN71_RS27735	0.59	-0.8
6,180,062	-		QEN71_RS27735	0.59	+0.2
6,180,062	-		QEN71_RS27735	0.59	-0.5
6,180,062	-		QEN71_RS27735	0.59	+1.9
6,180,062	-		QEN71_RS27735	0.59	-0.5
6,180,062	-		QEN71_RS27735	0.59	+0.3
6,180,062	-		QEN71_RS27735	0.59	+0.5
6,180,062	-		QEN71_RS27735	0.59	+0.0
6,180,136	+		QEN71_RS27735	0.68	+0.5
6,180,136	+		QEN71_RS27735	0.68	-0.8
6,180,137	-		QEN71_RS27735	0.68	+0.1
6,180,137	-		QEN71_RS27735	0.68	-0.3
6,180,137	-		QEN71_RS27735	0.68	+1.1
6,180,137	-		QEN71_RS27735	0.68	-0.6
6,180,137	-		QEN71_RS27735	0.68	+0.5
6,180,145	+		QEN71_RS27735	0.69	-0.3
6,180,146	-		QEN71_RS27735	0.69	-2.2
6,180,146	-		QEN71_RS27735	0.69	-0.3
6,180,146	-		QEN71_RS27735	0.69	+0.1
6,180,174	+		QEN71_RS27735	0.72	-0.2
6,180,174	+		QEN71_RS27735	0.72	-0.5
6,180,174	+		QEN71_RS27735	0.72	+0.5
6,180,174	+		QEN71_RS27735	0.72	+0.1
6,180,174	+		QEN71_RS27735	0.72	-1.6
6,180,175	-		QEN71_RS27735	0.72	-0.4
6,180,175	-		QEN71_RS27735	0.72	+0.1
6,180,175	-		QEN71_RS27735	0.72	+0.8
6,180,181	+		QEN71_RS27735	0.73	-1.2
6,180,181	+		QEN71_RS27735	0.73	-1.0
6,180,182	-		QEN71_RS27735	0.73	+1.3
6,180,192	+		QEN71_RS27735	0.74	-1.1
6,180,192	+		QEN71_RS27735	0.74	-0.0
6,180,192	+		QEN71_RS27735	0.74	-0.3
6,180,192	+		QEN71_RS27735	0.74	-1.3
6,180,192	+		QEN71_RS27735	0.74	-0.2
6,180,193	-		QEN71_RS27735	0.74	+0.6
6,180,193	-		QEN71_RS27735	0.74	+0.1
6,180,285	+		QEN71_RS27735	0.85	-0.8
6,180,285	+		QEN71_RS27735	0.85	-0.0
6,180,285	+		QEN71_RS27735	0.85	-0.2
6,180,285	+		QEN71_RS27735	0.85	+0.9
6,180,285	+		QEN71_RS27735	0.85	-0.3
6,180,285	+		QEN71_RS27735	0.85	+1.1
6,180,285	+		QEN71_RS27735	0.85	+0.6
6,180,285	+		QEN71_RS27735	0.85	-0.5
6,180,285	+		QEN71_RS27735	0.85	-0.8
6,180,285	+		QEN71_RS27735	0.85	-0.3
6,180,285	+		QEN71_RS27735	0.85	-0.7
6,180,285	+		QEN71_RS27735	0.85	-0.8
6,180,286	-		QEN71_RS27735	0.86	+1.1
6,180,286	-		QEN71_RS27735	0.86	-1.3
6,180,286	-		QEN71_RS27735	0.86	+0.2
6,180,286	-		QEN71_RS27735	0.86	+0.1
6,180,343	+				-0.1
6,180,343	+				-0.7
6,180,343	+				+0.7
6,180,344	-				+0.1
6,180,344	-				-0.1
6,180,344	-				+1.1
6,180,376	+				+0.0
6,180,376	+				+0.1
6,180,376	+				-0.2
6,180,376	+				+1.2
6,180,376	+				-0.2
6,180,376	+				-0.8
6,180,376	+				+0.0
6,180,376	+				+1.1
6,180,376	+				+0.1
6,180,376	+				-0.5
6,180,377	-				-2.4
6,180,377	-				+0.1
6,180,377	-				-0.5
6,180,377	-				+0.1
6,180,377	-				-0.3
6,180,377	-				-1.9
6,180,390	+				-0.5
6,180,390	+				-0.9
6,180,390	+				-3.2
6,180,390	+				+1.4
6,180,390	+				-0.4
6,180,390	+				+0.8
6,180,390	+				-0.2
6,180,391	-				+0.1
6,180,391	-				-0.4
6,180,391	-				+0.4
6,180,391	-				-0.3
6,180,666	+				-0.0
6,180,667	-				-0.2
6,180,667	-				-2.2
6,180,703	+				-0.2
6,180,704	-				-1.2
6,180,737	+				+0.6
6,180,737	+				-1.0
6,180,737	+				+0.9
6,180,737	+				-0.8
6,180,737	+				+0.5
6,180,737	+				-0.3
6,180,737	+				-0.4
6,180,738	-				+1.3
6,180,738	-				-0.2
6,180,738	-				-1.1
6,180,738	-				-0.3
6,180,738	-				+2.1
6,180,742	+				-0.4
6,180,742	+				-0.1
6,180,742	+				-0.0
6,180,742	+				+0.6
6,180,743	-				+1.5
6,180,743	-				+0.7
6,180,804	+				-1.9
6,180,997	+		QEN71_RS27740	0.62	+1.1
6,180,997	+		QEN71_RS27740	0.62	+0.6
6,180,998	-		QEN71_RS27740	0.62	-0.2
6,180,998	-		QEN71_RS27740	0.62	+1.1