Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26425 and QEN71_RS26430 are separated by 64 nucleotides QEN71_RS26430 and QEN71_RS26435 are separated by 201 nucleotides
QEN71_RS26425: QEN71_RS26425 - mechanosensitive ion channel family protein, at 5,892,077 to 5,892,889
_RS26425
QEN71_RS26430: QEN71_RS26430 - DedA family protein, at 5,892,954 to 5,893,643
_RS26430
QEN71_RS26435: QEN71_RS26435 - DNA mismatch repair endonuclease MutL, at 5,893,845 to 5,895,914
_RS26435
Position (kb) 5892
5893
5894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5892.050 kb on + strand at 5892.050 kb on + strand at 5892.050 kb on + strand at 5892.050 kb on + strand at 5892.051 kb on - strand at 5892.051 kb on - strand at 5892.051 kb on - strand at 5892.051 kb on - strand at 5892.051 kb on - strand at 5892.138 kb on + strand at 5892.138 kb on + strand at 5892.139 kb on - strand at 5892.139 kb on - strand at 5892.139 kb on - strand at 5892.139 kb on - strand at 5892.210 kb on + strand, within QEN71_RS26425 at 5892.211 kb on - strand, within QEN71_RS26425 at 5892.374 kb on - strand, within QEN71_RS26425 at 5892.581 kb on + strand, within QEN71_RS26425 at 5892.581 kb on + strand, within QEN71_RS26425 at 5892.581 kb on + strand, within QEN71_RS26425 at 5892.582 kb on - strand, within QEN71_RS26425 at 5892.582 kb on - strand, within QEN71_RS26425 at 5892.582 kb on - strand, within QEN71_RS26425 at 5892.582 kb on - strand, within QEN71_RS26425 at 5892.582 kb on - strand, within QEN71_RS26425 at 5892.582 kb on - strand, within QEN71_RS26425 at 5892.664 kb on - strand, within QEN71_RS26425 at 5892.664 kb on - strand, within QEN71_RS26425 at 5892.768 kb on - strand, within QEN71_RS26425 at 5892.769 kb on + strand, within QEN71_RS26425 at 5892.769 kb on + strand, within QEN71_RS26425 at 5892.769 kb on + strand, within QEN71_RS26425 at 5892.769 kb on + strand, within QEN71_RS26425 at 5892.769 kb on + strand, within QEN71_RS26425 at 5892.769 kb on + strand, within QEN71_RS26425 at 5892.770 kb on - strand, within QEN71_RS26425 at 5892.770 kb on - strand, within QEN71_RS26425 at 5892.770 kb on - strand, within QEN71_RS26425 at 5892.770 kb on - strand, within QEN71_RS26425 at 5892.776 kb on - strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.785 kb on + strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.786 kb on - strand, within QEN71_RS26425 at 5892.797 kb on + strand, within QEN71_RS26425 at 5892.797 kb on + strand, within QEN71_RS26425 at 5892.797 kb on + strand, within QEN71_RS26425 at 5892.797 kb on + strand, within QEN71_RS26425 at 5892.798 kb on - strand, within QEN71_RS26425 at 5892.826 kb on + strand at 5892.827 kb on - strand at 5892.827 kb on - strand at 5892.887 kb on + strand at 5892.888 kb on - strand at 5892.896 kb on + strand at 5892.897 kb on - strand at 5893.083 kb on - strand, within QEN71_RS26430 at 5893.381 kb on + strand, within QEN71_RS26430 at 5893.381 kb on + strand, within QEN71_RS26430 at 5893.382 kb on - strand, within QEN71_RS26430 at 5893.382 kb on - strand, within QEN71_RS26430 at 5893.604 kb on + strand at 5893.655 kb on + strand at 5893.655 kb on + strand at 5893.656 kb on - strand at 5893.665 kb on + strand at 5893.666 kb on - strand at 5893.666 kb on - strand at 5893.713 kb on - strand at 5893.720 kb on + strand at 5893.721 kb on - strand at 5893.721 kb on - strand at 5893.760 kb on - strand at 5893.799 kb on + strand at 5893.800 kb on - strand at 5893.800 kb on - strand at 5893.800 kb on - strand at 5893.833 kb on + strand at 5893.836 kb on - strand at 5894.003 kb on - strand at 5894.003 kb on - strand at 5894.003 kb on - strand at 5894.351 kb on + strand, within QEN71_RS26435 at 5894.352 kb on - strand, within QEN71_RS26435 at 5894.385 kb on + strand, within QEN71_RS26435 at 5894.385 kb on + strand, within QEN71_RS26435 at 5894.386 kb on - strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.631 kb on + strand, within QEN71_RS26435 at 5894.632 kb on - strand, within QEN71_RS26435 at 5894.632 kb on - strand, within QEN71_RS26435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,892,050 + -2.2 5,892,050 + -0.5 5,892,050 + -0.4 5,892,050 + -0.0 5,892,051 - +0.1 5,892,051 - -0.4 5,892,051 - +0.3 5,892,051 - +0.3 5,892,051 - -0.0 5,892,138 + -0.4 5,892,138 + +0.6 5,892,139 - -0.7 5,892,139 - -0.6 5,892,139 - -0.5 5,892,139 - -0.7 5,892,210 + QEN71_RS26425 0.16 +0.2 5,892,211 - QEN71_RS26425 0.16 +0.3 5,892,374 - QEN71_RS26425 0.37 -0.0 5,892,581 + QEN71_RS26425 0.62 -0.3 5,892,581 + QEN71_RS26425 0.62 -1.3 5,892,581 + QEN71_RS26425 0.62 +2.3 5,892,582 - QEN71_RS26425 0.62 +0.4 5,892,582 - QEN71_RS26425 0.62 +0.1 5,892,582 - QEN71_RS26425 0.62 +0.8 5,892,582 - QEN71_RS26425 0.62 +0.6 5,892,582 - QEN71_RS26425 0.62 +0.1 5,892,582 - QEN71_RS26425 0.62 -0.5 5,892,664 - QEN71_RS26425 0.72 -0.1 5,892,664 - QEN71_RS26425 0.72 -1.7 5,892,768 - QEN71_RS26425 0.85 +1.1 5,892,769 + QEN71_RS26425 0.85 -0.5 5,892,769 + QEN71_RS26425 0.85 -0.8 5,892,769 + QEN71_RS26425 0.85 +0.0 5,892,769 + QEN71_RS26425 0.85 +0.6 5,892,769 + QEN71_RS26425 0.85 -2.8 5,892,769 + QEN71_RS26425 0.85 -2.1 5,892,770 - QEN71_RS26425 0.85 -0.6 5,892,770 - QEN71_RS26425 0.85 -2.1 5,892,770 - QEN71_RS26425 0.85 -0.8 5,892,770 - QEN71_RS26425 0.85 -1.1 5,892,776 - QEN71_RS26425 0.86 +0.2 5,892,785 + QEN71_RS26425 0.87 +1.2 5,892,785 + QEN71_RS26425 0.87 -0.3 5,892,785 + QEN71_RS26425 0.87 +0.3 5,892,785 + QEN71_RS26425 0.87 -0.8 5,892,785 + QEN71_RS26425 0.87 -1.5 5,892,785 + QEN71_RS26425 0.87 -1.5 5,892,785 + QEN71_RS26425 0.87 +0.4 5,892,785 + QEN71_RS26425 0.87 -0.0 5,892,785 + QEN71_RS26425 0.87 +0.7 5,892,785 + QEN71_RS26425 0.87 +0.2 5,892,786 - QEN71_RS26425 0.87 -0.8 5,892,786 - QEN71_RS26425 0.87 -0.8 5,892,786 - QEN71_RS26425 0.87 -0.8 5,892,786 - QEN71_RS26425 0.87 -0.1 5,892,786 - QEN71_RS26425 0.87 +0.3 5,892,786 - QEN71_RS26425 0.87 +0.0 5,892,786 - QEN71_RS26425 0.87 +2.0 5,892,786 - QEN71_RS26425 0.87 -0.2 5,892,786 - QEN71_RS26425 0.87 -1.0 5,892,786 - QEN71_RS26425 0.87 +0.6 5,892,786 - QEN71_RS26425 0.87 -0.2 5,892,797 + QEN71_RS26425 0.89 -0.1 5,892,797 + QEN71_RS26425 0.89 +0.0 5,892,797 + QEN71_RS26425 0.89 +0.9 5,892,797 + QEN71_RS26425 0.89 +1.0 5,892,798 - QEN71_RS26425 0.89 -0.0 5,892,826 + -0.0 5,892,827 - +0.5 5,892,827 - -0.8 5,892,887 + -0.1 5,892,888 - -2.0 5,892,896 + +1.5 5,892,897 - -0.8 5,893,083 - QEN71_RS26430 0.19 +0.6 5,893,381 + QEN71_RS26430 0.62 +0.0 5,893,381 + QEN71_RS26430 0.62 -0.2 5,893,382 - QEN71_RS26430 0.62 +0.4 5,893,382 - QEN71_RS26430 0.62 +0.7 5,893,604 + +0.4 5,893,655 + -1.0 5,893,655 + -0.3 5,893,656 - +0.8 5,893,665 + +0.3 5,893,666 - +0.9 5,893,666 - -0.0 5,893,713 - -1.6 5,893,720 + -1.6 5,893,721 - +0.8 5,893,721 - +1.7 5,893,760 - -0.4 5,893,799 + -1.1 5,893,800 - +0.3 5,893,800 - -0.5 5,893,800 - -1.0 5,893,833 + +0.4 5,893,836 - +1.2 5,894,003 - -0.6 5,894,003 - -0.8 5,894,003 - -0.6 5,894,351 + QEN71_RS26435 0.24 +0.1 5,894,352 - QEN71_RS26435 0.24 -0.8 5,894,385 + QEN71_RS26435 0.26 -0.8 5,894,385 + QEN71_RS26435 0.26 +0.0 5,894,386 - QEN71_RS26435 0.26 -0.6 5,894,631 + QEN71_RS26435 0.38 -2.0 5,894,631 + QEN71_RS26435 0.38 -0.4 5,894,631 + QEN71_RS26435 0.38 +1.2 5,894,631 + QEN71_RS26435 0.38 -1.0 5,894,631 + QEN71_RS26435 0.38 -1.3 5,894,631 + QEN71_RS26435 0.38 +1.1 5,894,631 + QEN71_RS26435 0.38 -0.5 5,894,632 - QEN71_RS26435 0.38 -1.6 5,894,632 - QEN71_RS26435 0.38 -0.0
Or see this region's nucleotide sequence