Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26405 and QEN71_RS26410 are separated by 220 nucleotides QEN71_RS26410 and QEN71_RS26415 are separated by 141 nucleotides
QEN71_RS26405: QEN71_RS26405 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 5,887,368 to 5,888,300
_RS26405
QEN71_RS26410: QEN71_RS26410 - helix-turn-helix domain-containing protein, at 5,888,521 to 5,889,555
_RS26410
QEN71_RS26415: QEN71_RS26415 - MFS transporter, at 5,889,697 to 5,891,187
_RS26415
Position (kb) 5888
5889
5890 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5887.555 kb on + strand, within QEN71_RS26405 at 5887.561 kb on + strand, within QEN71_RS26405 at 5887.562 kb on - strand, within QEN71_RS26405 at 5887.562 kb on - strand, within QEN71_RS26405 at 5887.562 kb on - strand, within QEN71_RS26405 at 5887.678 kb on + strand, within QEN71_RS26405 at 5887.678 kb on + strand, within QEN71_RS26405 at 5887.679 kb on - strand, within QEN71_RS26405 at 5887.789 kb on + strand, within QEN71_RS26405 at 5887.790 kb on - strand, within QEN71_RS26405 at 5887.790 kb on - strand, within QEN71_RS26405 at 5887.843 kb on + strand, within QEN71_RS26405 at 5887.843 kb on + strand, within QEN71_RS26405 at 5887.843 kb on + strand, within QEN71_RS26405 at 5887.844 kb on - strand, within QEN71_RS26405 at 5887.844 kb on - strand, within QEN71_RS26405 at 5887.996 kb on + strand, within QEN71_RS26405 at 5887.996 kb on + strand, within QEN71_RS26405 at 5887.996 kb on + strand, within QEN71_RS26405 at 5887.996 kb on + strand, within QEN71_RS26405 at 5887.997 kb on - strand, within QEN71_RS26405 at 5887.997 kb on - strand, within QEN71_RS26405 at 5888.086 kb on + strand, within QEN71_RS26405 at 5888.086 kb on + strand, within QEN71_RS26405 at 5888.087 kb on - strand, within QEN71_RS26405 at 5888.182 kb on + strand, within QEN71_RS26405 at 5888.183 kb on - strand, within QEN71_RS26405 at 5888.183 kb on - strand, within QEN71_RS26405 at 5888.289 kb on + strand at 5888.289 kb on + strand at 5888.290 kb on - strand at 5888.290 kb on - strand at 5888.329 kb on + strand at 5888.330 kb on - strand at 5888.330 kb on - strand at 5888.339 kb on + strand at 5888.340 kb on - strand at 5888.349 kb on + strand at 5888.350 kb on - strand at 5888.422 kb on + strand at 5888.422 kb on + strand at 5888.422 kb on + strand at 5888.423 kb on - strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.428 kb on + strand at 5888.429 kb on - strand at 5888.429 kb on - strand at 5888.456 kb on + strand at 5888.456 kb on + strand at 5888.456 kb on + strand at 5888.497 kb on + strand at 5888.498 kb on - strand at 5888.574 kb on + strand at 5888.606 kb on + strand at 5888.607 kb on - strand at 5888.702 kb on - strand, within QEN71_RS26410 at 5888.702 kb on - strand, within QEN71_RS26410 at 5889.262 kb on + strand, within QEN71_RS26410 at 5889.263 kb on - strand, within QEN71_RS26410 at 5889.263 kb on - strand, within QEN71_RS26410 at 5889.263 kb on - strand, within QEN71_RS26410 at 5889.263 kb on - strand, within QEN71_RS26410 at 5889.273 kb on + strand, within QEN71_RS26410 at 5889.273 kb on + strand, within QEN71_RS26410 at 5889.273 kb on + strand, within QEN71_RS26410 at 5889.274 kb on - strand, within QEN71_RS26410 at 5889.274 kb on - strand, within QEN71_RS26410 at 5889.367 kb on + strand, within QEN71_RS26410 at 5889.367 kb on + strand, within QEN71_RS26410 at 5889.368 kb on - strand, within QEN71_RS26410 at 5889.615 kb on + strand at 5889.615 kb on + strand at 5889.615 kb on + strand at 5889.615 kb on + strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.616 kb on - strand at 5889.618 kb on + strand at 5889.618 kb on + strand at 5889.619 kb on - strand at 5889.619 kb on - strand at 5889.628 kb on - strand at 5889.656 kb on + strand at 5889.656 kb on + strand at 5889.656 kb on + strand at 5889.657 kb on - strand at 5889.861 kb on - strand, within QEN71_RS26415 at 5889.861 kb on - strand, within QEN71_RS26415 at 5889.874 kb on + strand, within QEN71_RS26415 at 5889.874 kb on + strand, within QEN71_RS26415 at 5889.875 kb on - strand, within QEN71_RS26415 at 5889.875 kb on - strand, within QEN71_RS26415 at 5889.875 kb on - strand, within QEN71_RS26415 at 5889.875 kb on - strand, within QEN71_RS26415 at 5890.244 kb on - strand, within QEN71_RS26415 at 5890.265 kb on - strand, within QEN71_RS26415 at 5890.265 kb on - strand, within QEN71_RS26415 at 5890.319 kb on + strand, within QEN71_RS26415 at 5890.320 kb on - strand, within QEN71_RS26415 at 5890.320 kb on - strand, within QEN71_RS26415 at 5890.384 kb on + strand, within QEN71_RS26415 at 5890.384 kb on + strand, within QEN71_RS26415 at 5890.384 kb on + strand, within QEN71_RS26415 at 5890.385 kb on - strand, within QEN71_RS26415 at 5890.385 kb on - strand, within QEN71_RS26415 at 5890.385 kb on - strand, within QEN71_RS26415 at 5890.385 kb on - strand, within QEN71_RS26415 at 5890.386 kb on + strand, within QEN71_RS26415 at 5890.387 kb on - strand, within QEN71_RS26415 at 5890.459 kb on + strand, within QEN71_RS26415 at 5890.540 kb on + strand, within QEN71_RS26415 at 5890.540 kb on + strand, within QEN71_RS26415 at 5890.541 kb on - strand, within QEN71_RS26415 at 5890.543 kb on - strand, within QEN71_RS26415
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,887,555 + QEN71_RS26405 0.20 -0.3 5,887,561 + QEN71_RS26405 0.21 -1.3 5,887,562 - QEN71_RS26405 0.21 -0.0 5,887,562 - QEN71_RS26405 0.21 -0.3 5,887,562 - QEN71_RS26405 0.21 -0.6 5,887,678 + QEN71_RS26405 0.33 -1.2 5,887,678 + QEN71_RS26405 0.33 -1.0 5,887,679 - QEN71_RS26405 0.33 +0.4 5,887,789 + QEN71_RS26405 0.45 -0.7 5,887,790 - QEN71_RS26405 0.45 +0.8 5,887,790 - QEN71_RS26405 0.45 -0.3 5,887,843 + QEN71_RS26405 0.51 +0.4 5,887,843 + QEN71_RS26405 0.51 +0.2 5,887,843 + QEN71_RS26405 0.51 +0.1 5,887,844 - QEN71_RS26405 0.51 -0.8 5,887,844 - QEN71_RS26405 0.51 +0.3 5,887,996 + QEN71_RS26405 0.67 -0.4 5,887,996 + QEN71_RS26405 0.67 +0.3 5,887,996 + QEN71_RS26405 0.67 -0.6 5,887,996 + QEN71_RS26405 0.67 -0.1 5,887,997 - QEN71_RS26405 0.67 +0.2 5,887,997 - QEN71_RS26405 0.67 +0.4 5,888,086 + QEN71_RS26405 0.77 +0.7 5,888,086 + QEN71_RS26405 0.77 +0.2 5,888,087 - QEN71_RS26405 0.77 -0.2 5,888,182 + QEN71_RS26405 0.87 -0.4 5,888,183 - QEN71_RS26405 0.87 +0.1 5,888,183 - QEN71_RS26405 0.87 -1.2 5,888,289 + -1.7 5,888,289 + -0.4 5,888,290 - -0.8 5,888,290 - -0.3 5,888,329 + -0.6 5,888,330 - +0.1 5,888,330 - -0.0 5,888,339 + -0.0 5,888,340 - -0.9 5,888,349 + +0.3 5,888,350 - +1.9 5,888,422 + +1.0 5,888,422 + -2.1 5,888,422 + -0.3 5,888,423 - -0.5 5,888,428 + -1.7 5,888,428 + +0.2 5,888,428 + -0.1 5,888,428 + +2.8 5,888,428 + +0.1 5,888,428 + -0.7 5,888,428 + +1.2 5,888,428 + +0.6 5,888,429 - +0.4 5,888,429 - +1.2 5,888,456 + -2.0 5,888,456 + -0.3 5,888,456 + +1.3 5,888,497 + +0.3 5,888,498 - +0.3 5,888,574 + +0.2 5,888,606 + -1.0 5,888,607 - -0.5 5,888,702 - QEN71_RS26410 0.17 -0.5 5,888,702 - QEN71_RS26410 0.17 +0.2 5,889,262 + QEN71_RS26410 0.72 +0.6 5,889,263 - QEN71_RS26410 0.72 -0.9 5,889,263 - QEN71_RS26410 0.72 +0.1 5,889,263 - QEN71_RS26410 0.72 -0.1 5,889,263 - QEN71_RS26410 0.72 -1.7 5,889,273 + QEN71_RS26410 0.73 -2.7 5,889,273 + QEN71_RS26410 0.73 -0.6 5,889,273 + QEN71_RS26410 0.73 -0.1 5,889,274 - QEN71_RS26410 0.73 -0.0 5,889,274 - QEN71_RS26410 0.73 +1.7 5,889,367 + QEN71_RS26410 0.82 -1.0 5,889,367 + QEN71_RS26410 0.82 -0.1 5,889,368 - QEN71_RS26410 0.82 -1.6 5,889,615 + -0.4 5,889,615 + +0.4 5,889,615 + -0.6 5,889,615 + -1.3 5,889,616 - -0.2 5,889,616 - +0.4 5,889,616 - +1.4 5,889,616 - -0.0 5,889,616 - -0.1 5,889,616 - -0.7 5,889,616 - -0.0 5,889,616 - -1.5 5,889,616 - -0.4 5,889,616 - -0.4 5,889,616 - -0.0 5,889,618 + +0.4 5,889,618 + -0.0 5,889,619 - -0.7 5,889,619 - -0.6 5,889,628 - +0.1 5,889,656 + -0.2 5,889,656 + -0.6 5,889,656 + +0.1 5,889,657 - +1.0 5,889,861 - QEN71_RS26415 0.11 -0.0 5,889,861 - QEN71_RS26415 0.11 +1.0 5,889,874 + QEN71_RS26415 0.12 -1.0 5,889,874 + QEN71_RS26415 0.12 +0.5 5,889,875 - QEN71_RS26415 0.12 +0.5 5,889,875 - QEN71_RS26415 0.12 -1.2 5,889,875 - QEN71_RS26415 0.12 -0.5 5,889,875 - QEN71_RS26415 0.12 +0.2 5,890,244 - QEN71_RS26415 0.37 +0.2 5,890,265 - QEN71_RS26415 0.38 -0.4 5,890,265 - QEN71_RS26415 0.38 -0.0 5,890,319 + QEN71_RS26415 0.42 -1.3 5,890,320 - QEN71_RS26415 0.42 -1.1 5,890,320 - QEN71_RS26415 0.42 +0.3 5,890,384 + QEN71_RS26415 0.46 -1.3 5,890,384 + QEN71_RS26415 0.46 +1.3 5,890,384 + QEN71_RS26415 0.46 +0.4 5,890,385 - QEN71_RS26415 0.46 -1.8 5,890,385 - QEN71_RS26415 0.46 -0.6 5,890,385 - QEN71_RS26415 0.46 -0.4 5,890,385 - QEN71_RS26415 0.46 +0.1 5,890,386 + QEN71_RS26415 0.46 -0.0 5,890,387 - QEN71_RS26415 0.46 +0.0 5,890,459 + QEN71_RS26415 0.51 -0.3 5,890,540 + QEN71_RS26415 0.57 +1.2 5,890,540 + QEN71_RS26415 0.57 +0.5 5,890,541 - QEN71_RS26415 0.57 +1.0 5,890,543 - QEN71_RS26415 0.57 -1.7
Or see this region's nucleotide sequence