Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26310

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS26305 and QEN71_RS26310 are separated by 57 nucleotidesQEN71_RS26310 and QEN71_RS26315 are separated by 86 nucleotides QEN71_RS26305: QEN71_RS26305 - glycosyltransferase, at 5,859,736 to 5,860,995 _RS26305 QEN71_RS26310: QEN71_RS26310 - acyltransferase, at 5,861,053 to 5,862,327 _RS26310 QEN71_RS26315: QEN71_RS26315 - acyltransferase, at 5,862,414 to 5,863,559 _RS26315 Position (kb) 5861 5862 5863Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5860.060 kb on + strand, within QEN71_RS26305at 5860.061 kb on - strand, within QEN71_RS26305at 5860.108 kb on + strand, within QEN71_RS26305at 5860.117 kb on + strand, within QEN71_RS26305at 5860.117 kb on + strand, within QEN71_RS26305at 5860.117 kb on + strand, within QEN71_RS26305at 5860.118 kb on - strand, within QEN71_RS26305at 5860.118 kb on - strand, within QEN71_RS26305at 5860.118 kb on - strand, within QEN71_RS26305at 5860.118 kb on - strand, within QEN71_RS26305at 5860.118 kb on - strand, within QEN71_RS26305at 5860.282 kb on - strand, within QEN71_RS26305at 5860.282 kb on - strand, within QEN71_RS26305at 5860.282 kb on - strand, within QEN71_RS26305at 5860.282 kb on - strand, within QEN71_RS26305at 5860.372 kb on + strand, within QEN71_RS26305at 5860.372 kb on + strand, within QEN71_RS26305at 5860.373 kb on - strand, within QEN71_RS26305at 5860.373 kb on - strand, within QEN71_RS26305at 5860.468 kb on + strand, within QEN71_RS26305at 5860.468 kb on + strand, within QEN71_RS26305at 5860.468 kb on + strand, within QEN71_RS26305at 5860.625 kb on + strand, within QEN71_RS26305at 5860.625 kb on + strand, within QEN71_RS26305at 5860.626 kb on - strand, within QEN71_RS26305at 5860.708 kb on + strand, within QEN71_RS26305at 5860.709 kb on - strand, within QEN71_RS26305at 5860.738 kb on + strand, within QEN71_RS26305at 5861.039 kb on + strandat 5861.039 kb on + strandat 5861.040 kb on - strandat 5861.177 kb on + strandat 5861.177 kb on + strandat 5861.177 kb on + strandat 5861.177 kb on + strandat 5861.178 kb on - strandat 5861.178 kb on - strandat 5861.303 kb on + strand, within QEN71_RS26310at 5861.303 kb on + strand, within QEN71_RS26310at 5861.303 kb on + strand, within QEN71_RS26310at 5861.303 kb on + strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.304 kb on - strand, within QEN71_RS26310at 5861.312 kb on + strand, within QEN71_RS26310at 5861.312 kb on + strand, within QEN71_RS26310at 5861.312 kb on + strand, within QEN71_RS26310at 5861.312 kb on + strand, within QEN71_RS26310at 5861.312 kb on + strand, within QEN71_RS26310at 5861.313 kb on - strand, within QEN71_RS26310at 5861.313 kb on - strand, within QEN71_RS26310at 5861.313 kb on - strand, within QEN71_RS26310at 5861.313 kb on - strand, within QEN71_RS26310at 5861.313 kb on - strand, within QEN71_RS26310at 5861.459 kb on + strand, within QEN71_RS26310at 5861.609 kb on + strand, within QEN71_RS26310at 5861.610 kb on - strand, within QEN71_RS26310at 5861.612 kb on + strand, within QEN71_RS26310at 5861.762 kb on + strand, within QEN71_RS26310at 5861.762 kb on + strand, within QEN71_RS26310at 5861.762 kb on + strand, within QEN71_RS26310at 5861.763 kb on - strand, within QEN71_RS26310at 5861.763 kb on - strand, within QEN71_RS26310at 5861.763 kb on - strand, within QEN71_RS26310at 5861.763 kb on - strand, within QEN71_RS26310at 5861.809 kb on - strand, within QEN71_RS26310at 5861.927 kb on + strand, within QEN71_RS26310at 5861.945 kb on + strand, within QEN71_RS26310at 5861.945 kb on + strand, within QEN71_RS26310at 5861.946 kb on - strand, within QEN71_RS26310at 5861.946 kb on - strand, within QEN71_RS26310at 5861.946 kb on - strand, within QEN71_RS26310at 5861.946 kb on - strand, within QEN71_RS26310at 5861.948 kb on + strand, within QEN71_RS26310at 5861.949 kb on - strand, within QEN71_RS26310at 5861.981 kb on + strand, within QEN71_RS26310at 5861.981 kb on + strand, within QEN71_RS26310at 5862.089 kb on + strand, within QEN71_RS26310at 5862.529 kb on + strand, within QEN71_RS26315at 5862.530 kb on - strand, within QEN71_RS26315at 5862.530 kb on - strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.661 kb on + strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.662 kb on - strand, within QEN71_RS26315at 5862.665 kb on + strand, within QEN71_RS26315at 5862.665 kb on + strand, within QEN71_RS26315at 5862.666 kb on - strand, within QEN71_RS26315at 5862.666 kb on - strand, within QEN71_RS26315at 5862.666 kb on - strand, within QEN71_RS26315at 5862.671 kb on - strand, within QEN71_RS26315at 5862.784 kb on + strand, within QEN71_RS26315at 5862.892 kb on + strand, within QEN71_RS26315at 5862.892 kb on + strand, within QEN71_RS26315at 5862.893 kb on - strand, within QEN71_RS26315at 5862.913 kb on + strand, within QEN71_RS26315at 5862.914 kb on - strand, within QEN71_RS26315at 5862.914 kb on - strand, within QEN71_RS26315at 5862.914 kb on - strand, within QEN71_RS26315at 5862.967 kb on + strand, within QEN71_RS26315at 5862.967 kb on + strand, within QEN71_RS26315at 5862.968 kb on - strand, within QEN71_RS26315at 5863.118 kb on - strand, within QEN71_RS26315at 5863.118 kb on - strand, within QEN71_RS26315at 5863.172 kb on - strand, within QEN71_RS26315at 5863.172 kb on - strand, within QEN71_RS26315at 5863.255 kb on + strand, within QEN71_RS26315at 5863.255 kb on + strand, within QEN71_RS26315at 5863.255 kb on + strand, within QEN71_RS26315at 5863.255 kb on + strand, within QEN71_RS26315at 5863.255 kb on + strand, within QEN71_RS26315at 5863.256 kb on - strand, within QEN71_RS26315at 5863.256 kb on - strand, within QEN71_RS26315at 5863.256 kb on - strand, within QEN71_RS26315at 5863.258 kb on + strand, within QEN71_RS26315at 5863.258 kb on + strand, within QEN71_RS26315at 5863.259 kb on - strand, within QEN71_RS26315at 5863.259 kb on - strand, within QEN71_RS26315at 5863.327 kb on + strand, within QEN71_RS26315

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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5,860,060 + QEN71_RS26305 0.26 -0.3
5,860,061 - QEN71_RS26305 0.26 +1.3
5,860,108 + QEN71_RS26305 0.30 -0.3
5,860,117 + QEN71_RS26305 0.30 -1.8
5,860,117 + QEN71_RS26305 0.30 +1.2
5,860,117 + QEN71_RS26305 0.30 -0.7
5,860,118 - QEN71_RS26305 0.30 -0.4
5,860,118 - QEN71_RS26305 0.30 -0.0
5,860,118 - QEN71_RS26305 0.30 +1.3
5,860,118 - QEN71_RS26305 0.30 -0.4
5,860,118 - QEN71_RS26305 0.30 -0.3
5,860,282 - QEN71_RS26305 0.43 -0.4
5,860,282 - QEN71_RS26305 0.43 +0.3
5,860,282 - QEN71_RS26305 0.43 -1.5
5,860,282 - QEN71_RS26305 0.43 +0.5
5,860,372 + QEN71_RS26305 0.50 +1.7
5,860,372 + QEN71_RS26305 0.50 +0.0
5,860,373 - QEN71_RS26305 0.51 -1.0
5,860,373 - QEN71_RS26305 0.51 +0.2
5,860,468 + QEN71_RS26305 0.58 -0.6
5,860,468 + QEN71_RS26305 0.58 +1.0
5,860,468 + QEN71_RS26305 0.58 -0.8
5,860,625 + QEN71_RS26305 0.71 -0.6
5,860,625 + QEN71_RS26305 0.71 -2.9
5,860,626 - QEN71_RS26305 0.71 -0.3
5,860,708 + QEN71_RS26305 0.77 -0.9
5,860,709 - QEN71_RS26305 0.77 -1.5
5,860,738 + QEN71_RS26305 0.80 +1.7
5,861,039 + +0.7
5,861,039 + -0.4
5,861,040 - +0.2
5,861,177 + -0.0
5,861,177 + +1.6
5,861,177 + -0.4
5,861,177 + +2.2
5,861,178 - -0.1
5,861,178 - -0.6
5,861,303 + QEN71_RS26310 0.20 -0.0
5,861,303 + QEN71_RS26310 0.20 +0.8
5,861,303 + QEN71_RS26310 0.20 -0.6
5,861,303 + QEN71_RS26310 0.20 +0.0
5,861,304 - QEN71_RS26310 0.20 -0.5
5,861,304 - QEN71_RS26310 0.20 +0.2
5,861,304 - QEN71_RS26310 0.20 +0.4
5,861,304 - QEN71_RS26310 0.20 +3.5
5,861,304 - QEN71_RS26310 0.20 +1.0
5,861,304 - QEN71_RS26310 0.20 -0.1
5,861,304 - QEN71_RS26310 0.20 -0.5
5,861,304 - QEN71_RS26310 0.20 +2.6
5,861,304 - QEN71_RS26310 0.20 -0.1
5,861,312 + QEN71_RS26310 0.20 +0.3
5,861,312 + QEN71_RS26310 0.20 -0.5
5,861,312 + QEN71_RS26310 0.20 -0.5
5,861,312 + QEN71_RS26310 0.20 +0.5
5,861,312 + QEN71_RS26310 0.20 -0.1
5,861,313 - QEN71_RS26310 0.20 +0.5
5,861,313 - QEN71_RS26310 0.20 -1.7
5,861,313 - QEN71_RS26310 0.20 -0.8
5,861,313 - QEN71_RS26310 0.20 -0.0
5,861,313 - QEN71_RS26310 0.20 +0.5
5,861,459 + QEN71_RS26310 0.32 -1.5
5,861,609 + QEN71_RS26310 0.44 -0.4
5,861,610 - QEN71_RS26310 0.44 -1.0
5,861,612 + QEN71_RS26310 0.44 -0.5
5,861,762 + QEN71_RS26310 0.56 +0.7
5,861,762 + QEN71_RS26310 0.56 -0.4
5,861,762 + QEN71_RS26310 0.56 +0.4
5,861,763 - QEN71_RS26310 0.56 +1.4
5,861,763 - QEN71_RS26310 0.56 +0.1
5,861,763 - QEN71_RS26310 0.56 -0.0
5,861,763 - QEN71_RS26310 0.56 -0.7
5,861,809 - QEN71_RS26310 0.59 -0.8
5,861,927 + QEN71_RS26310 0.69 -0.1
5,861,945 + QEN71_RS26310 0.70 -0.3
5,861,945 + QEN71_RS26310 0.70 -0.2
5,861,946 - QEN71_RS26310 0.70 -0.3
5,861,946 - QEN71_RS26310 0.70 -0.4
5,861,946 - QEN71_RS26310 0.70 +0.7
5,861,946 - QEN71_RS26310 0.70 +1.0
5,861,948 + QEN71_RS26310 0.70 +1.8
5,861,949 - QEN71_RS26310 0.70 +0.0
5,861,981 + QEN71_RS26310 0.73 +0.5
5,861,981 + QEN71_RS26310 0.73 -0.1
5,862,089 + QEN71_RS26310 0.81 +0.2
5,862,529 + QEN71_RS26315 0.10 -0.2
5,862,530 - QEN71_RS26315 0.10 -0.1
5,862,530 - QEN71_RS26315 0.10 +1.3
5,862,661 + QEN71_RS26315 0.22 -0.3
5,862,661 + QEN71_RS26315 0.22 -0.1
5,862,661 + QEN71_RS26315 0.22 +0.1
5,862,661 + QEN71_RS26315 0.22 -0.0
5,862,661 + QEN71_RS26315 0.22 -1.1
5,862,661 + QEN71_RS26315 0.22 -0.0
5,862,661 + QEN71_RS26315 0.22 -0.3
5,862,661 + QEN71_RS26315 0.22 +1.6
5,862,662 - QEN71_RS26315 0.22 -0.6
5,862,662 - QEN71_RS26315 0.22 +0.2
5,862,662 - QEN71_RS26315 0.22 -1.0
5,862,662 - QEN71_RS26315 0.22 +0.6
5,862,662 - QEN71_RS26315 0.22 -0.4
5,862,662 - QEN71_RS26315 0.22 -0.7
5,862,662 - QEN71_RS26315 0.22 -0.0
5,862,665 + QEN71_RS26315 0.22 +0.6
5,862,665 + QEN71_RS26315 0.22 +0.7
5,862,666 - QEN71_RS26315 0.22 +0.2
5,862,666 - QEN71_RS26315 0.22 -0.2
5,862,666 - QEN71_RS26315 0.22 +0.0
5,862,671 - QEN71_RS26315 0.22 -2.5
5,862,784 + QEN71_RS26315 0.32 +0.4
5,862,892 + QEN71_RS26315 0.42 -0.5
5,862,892 + QEN71_RS26315 0.42 -0.0
5,862,893 - QEN71_RS26315 0.42 +0.7
5,862,913 + QEN71_RS26315 0.44 +0.1
5,862,914 - QEN71_RS26315 0.44 +1.0
5,862,914 - QEN71_RS26315 0.44 -0.2
5,862,914 - QEN71_RS26315 0.44 +1.1
5,862,967 + QEN71_RS26315 0.48 -0.6
5,862,967 + QEN71_RS26315 0.48 +0.2
5,862,968 - QEN71_RS26315 0.48 -0.4
5,863,118 - QEN71_RS26315 0.61 -0.5
5,863,118 - QEN71_RS26315 0.61 -0.9
5,863,172 - QEN71_RS26315 0.66 +1.3
5,863,172 - QEN71_RS26315 0.66 +1.5
5,863,255 + QEN71_RS26315 0.73 -0.0
5,863,255 + QEN71_RS26315 0.73 +0.6
5,863,255 + QEN71_RS26315 0.73 +0.4
5,863,255 + QEN71_RS26315 0.73 -0.6
5,863,255 + QEN71_RS26315 0.73 -1.3
5,863,256 - QEN71_RS26315 0.73 -0.0
5,863,256 - QEN71_RS26315 0.73 -0.7
5,863,256 - QEN71_RS26315 0.73 -2.1
5,863,258 + QEN71_RS26315 0.74 -0.0
5,863,258 + QEN71_RS26315 0.74 +0.4
5,863,259 - QEN71_RS26315 0.74 -0.4
5,863,259 - QEN71_RS26315 0.74 +1.0
5,863,327 + QEN71_RS26315 0.80 +1.1

Or see this region's nucleotide sequence