Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS24750 and QEN71_RS24755 overlap by 1 nucleotides QEN71_RS24755 and QEN71_RS24760 are separated by 191 nucleotides QEN71_RS24760 and QEN71_RS24765 are separated by 136 nucleotides
QEN71_RS24750: QEN71_RS24750 - DNA (cytosine-5-)-methyltransferase, at 5,506,090 to 5,507,391
_RS24750
QEN71_RS24755: QEN71_RS24755 - very short patch repair endonuclease, at 5,507,391 to 5,507,837
_RS24755
QEN71_RS24760: QEN71_RS24760 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 5,508,029 to 5,508,538
_RS24760
QEN71_RS24765: QEN71_RS24765 - MFS transporter, at 5,508,675 to 5,510,105
_RS24765
Position (kb) 5508
5509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.035 kb on + strand, within QEN71_RS24750 at 5507.036 kb on - strand, within QEN71_RS24750 at 5507.036 kb on - strand, within QEN71_RS24750 at 5507.036 kb on - strand, within QEN71_RS24750 at 5507.036 kb on - strand, within QEN71_RS24750 at 5507.036 kb on - strand, within QEN71_RS24750 at 5507.047 kb on + strand, within QEN71_RS24750 at 5507.047 kb on + strand, within QEN71_RS24750 at 5507.047 kb on + strand, within QEN71_RS24750 at 5507.048 kb on - strand, within QEN71_RS24750 at 5507.048 kb on - strand, within QEN71_RS24750 at 5507.087 kb on - strand, within QEN71_RS24750 at 5507.135 kb on - strand, within QEN71_RS24750 at 5507.164 kb on + strand, within QEN71_RS24750 at 5507.164 kb on + strand, within QEN71_RS24750 at 5507.164 kb on + strand, within QEN71_RS24750 at 5507.164 kb on + strand, within QEN71_RS24750 at 5507.164 kb on + strand, within QEN71_RS24750 at 5507.164 kb on + strand, within QEN71_RS24750 at 5507.165 kb on - strand, within QEN71_RS24750 at 5507.165 kb on - strand, within QEN71_RS24750 at 5507.165 kb on - strand, within QEN71_RS24750 at 5507.165 kb on - strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.239 kb on + strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.240 kb on - strand, within QEN71_RS24750 at 5507.765 kb on + strand, within QEN71_RS24755 at 5507.766 kb on - strand, within QEN71_RS24755 at 5507.766 kb on - strand, within QEN71_RS24755 at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.918 kb on + strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.919 kb on - strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.969 kb on + strand at 5507.970 kb on - strand at 5507.970 kb on - strand at 5507.970 kb on - strand at 5507.970 kb on - strand at 5507.970 kb on - strand at 5507.970 kb on - strand at 5508.344 kb on + strand, within QEN71_RS24760 at 5508.344 kb on + strand, within QEN71_RS24760 at 5508.345 kb on - strand, within QEN71_RS24760 at 5508.345 kb on - strand, within QEN71_RS24760 at 5508.345 kb on - strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.476 kb on + strand, within QEN71_RS24760 at 5508.477 kb on - strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.478 kb on + strand, within QEN71_RS24760 at 5508.479 kb on - strand, within QEN71_RS24760 at 5508.479 kb on - strand, within QEN71_RS24760 at 5508.479 kb on - strand, within QEN71_RS24760 at 5508.479 kb on - strand, within QEN71_RS24760 at 5508.512 kb on + strand at 5508.512 kb on + strand at 5508.512 kb on + strand at 5508.513 kb on - strand at 5508.513 kb on - strand at 5508.513 kb on - strand at 5508.513 kb on - strand at 5508.513 kb on - strand at 5508.513 kb on - strand at 5508.524 kb on + strand at 5508.524 kb on + strand at 5508.524 kb on + strand at 5508.524 kb on + strand at 5508.524 kb on + strand at 5508.524 kb on + strand at 5508.525 kb on - strand at 5508.525 kb on - strand at 5508.525 kb on - strand at 5508.536 kb on + strand at 5508.536 kb on + strand at 5508.537 kb on - strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.560 kb on + strand at 5508.561 kb on - strand at 5508.561 kb on - strand at 5508.561 kb on - strand at 5508.561 kb on - strand at 5508.561 kb on - strand at 5508.561 kb on - strand at 5508.561 kb on - strand at 5508.777 kb on + strand at 5508.912 kb on + strand, within QEN71_RS24765 at 5508.913 kb on - strand, within QEN71_RS24765 at 5508.984 kb on + strand, within QEN71_RS24765 at 5508.984 kb on + strand, within QEN71_RS24765 at 5508.984 kb on + strand, within QEN71_RS24765 at 5508.984 kb on + strand, within QEN71_RS24765 at 5508.985 kb on - strand, within QEN71_RS24765 at 5509.131 kb on + strand, within QEN71_RS24765 at 5509.131 kb on + strand, within QEN71_RS24765 at 5509.131 kb on + strand, within QEN71_RS24765 at 5509.132 kb on - strand, within QEN71_RS24765 at 5509.132 kb on - strand, within QEN71_RS24765 at 5509.132 kb on - strand, within QEN71_RS24765 at 5509.335 kb on + strand, within QEN71_RS24765 at 5509.336 kb on - strand, within QEN71_RS24765 at 5509.336 kb on - strand, within QEN71_RS24765 at 5509.336 kb on - strand, within QEN71_RS24765 at 5509.336 kb on - strand, within QEN71_RS24765 at 5509.342 kb on - strand, within QEN71_RS24765 at 5509.464 kb on + strand, within QEN71_RS24765 at 5509.464 kb on + strand, within QEN71_RS24765 at 5509.526 kb on + strand, within QEN71_RS24765 at 5509.526 kb on + strand, within QEN71_RS24765 at 5509.526 kb on + strand, within QEN71_RS24765 at 5509.526 kb on + strand, within QEN71_RS24765 at 5509.526 kb on + strand, within QEN71_RS24765 at 5509.527 kb on - strand, within QEN71_RS24765 at 5509.527 kb on - strand, within QEN71_RS24765 at 5509.527 kb on - strand, within QEN71_RS24765
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,507,035 + QEN71_RS24750 0.73 +0.4 5,507,035 + QEN71_RS24750 0.73 +0.6 5,507,035 + QEN71_RS24750 0.73 -0.1 5,507,035 + QEN71_RS24750 0.73 +0.7 5,507,035 + QEN71_RS24750 0.73 -0.3 5,507,035 + QEN71_RS24750 0.73 +0.2 5,507,035 + QEN71_RS24750 0.73 +0.3 5,507,036 - QEN71_RS24750 0.73 -1.2 5,507,036 - QEN71_RS24750 0.73 -1.5 5,507,036 - QEN71_RS24750 0.73 +0.2 5,507,036 - QEN71_RS24750 0.73 +0.5 5,507,036 - QEN71_RS24750 0.73 +1.2 5,507,047 + QEN71_RS24750 0.74 +0.2 5,507,047 + QEN71_RS24750 0.74 -0.5 5,507,047 + QEN71_RS24750 0.74 -0.4 5,507,048 - QEN71_RS24750 0.74 +0.4 5,507,048 - QEN71_RS24750 0.74 -0.4 5,507,087 - QEN71_RS24750 0.77 +0.8 5,507,135 - QEN71_RS24750 0.80 -0.4 5,507,164 + QEN71_RS24750 0.82 -0.5 5,507,164 + QEN71_RS24750 0.82 -0.5 5,507,164 + QEN71_RS24750 0.82 +0.6 5,507,164 + QEN71_RS24750 0.82 +0.0 5,507,164 + QEN71_RS24750 0.82 +0.3 5,507,164 + QEN71_RS24750 0.82 -0.2 5,507,165 - QEN71_RS24750 0.83 +0.1 5,507,165 - QEN71_RS24750 0.83 +0.7 5,507,165 - QEN71_RS24750 0.83 -0.2 5,507,165 - QEN71_RS24750 0.83 -0.1 5,507,239 + QEN71_RS24750 0.88 -0.4 5,507,239 + QEN71_RS24750 0.88 -1.4 5,507,239 + QEN71_RS24750 0.88 +0.9 5,507,239 + QEN71_RS24750 0.88 +0.7 5,507,239 + QEN71_RS24750 0.88 +1.2 5,507,239 + QEN71_RS24750 0.88 -0.4 5,507,239 + QEN71_RS24750 0.88 -1.0 5,507,239 + QEN71_RS24750 0.88 +1.1 5,507,239 + QEN71_RS24750 0.88 -0.3 5,507,239 + QEN71_RS24750 0.88 -0.7 5,507,239 + QEN71_RS24750 0.88 -0.3 5,507,240 - QEN71_RS24750 0.88 -0.0 5,507,240 - QEN71_RS24750 0.88 +3.1 5,507,240 - QEN71_RS24750 0.88 -0.4 5,507,240 - QEN71_RS24750 0.88 +0.3 5,507,240 - QEN71_RS24750 0.88 +0.0 5,507,240 - QEN71_RS24750 0.88 +0.5 5,507,240 - QEN71_RS24750 0.88 +0.3 5,507,240 - QEN71_RS24750 0.88 +1.1 5,507,240 - QEN71_RS24750 0.88 -0.1 5,507,240 - QEN71_RS24750 0.88 -0.5 5,507,765 + QEN71_RS24755 0.84 -2.1 5,507,766 - QEN71_RS24755 0.84 -1.1 5,507,766 - QEN71_RS24755 0.84 +0.4 5,507,918 + +0.4 5,507,918 + +0.3 5,507,918 + +0.6 5,507,918 + -1.1 5,507,918 + -0.7 5,507,918 + +0.1 5,507,918 + -0.2 5,507,918 + +1.7 5,507,919 - +0.5 5,507,919 - +0.6 5,507,919 - -0.7 5,507,919 - -0.0 5,507,919 - +0.5 5,507,919 - -1.8 5,507,919 - +0.1 5,507,919 - -1.1 5,507,919 - -0.3 5,507,969 + -0.7 5,507,969 + -0.7 5,507,969 + +0.2 5,507,969 + +1.1 5,507,969 + +0.4 5,507,969 + -0.7 5,507,969 + +0.6 5,507,969 + +0.5 5,507,970 - +0.9 5,507,970 - +0.0 5,507,970 - +1.2 5,507,970 - -1.2 5,507,970 - -1.9 5,507,970 - -0.3 5,508,344 + QEN71_RS24760 0.62 -0.4 5,508,344 + QEN71_RS24760 0.62 -0.1 5,508,345 - QEN71_RS24760 0.62 -0.7 5,508,345 - QEN71_RS24760 0.62 -0.1 5,508,345 - QEN71_RS24760 0.62 +1.5 5,508,476 + QEN71_RS24760 0.88 +0.6 5,508,476 + QEN71_RS24760 0.88 +0.4 5,508,476 + QEN71_RS24760 0.88 -0.1 5,508,476 + QEN71_RS24760 0.88 -0.2 5,508,476 + QEN71_RS24760 0.88 +1.1 5,508,476 + QEN71_RS24760 0.88 +1.0 5,508,476 + QEN71_RS24760 0.88 -0.1 5,508,476 + QEN71_RS24760 0.88 -1.4 5,508,477 - QEN71_RS24760 0.88 +0.4 5,508,478 + QEN71_RS24760 0.88 -0.5 5,508,478 + QEN71_RS24760 0.88 -0.1 5,508,478 + QEN71_RS24760 0.88 +0.5 5,508,478 + QEN71_RS24760 0.88 +0.2 5,508,478 + QEN71_RS24760 0.88 +0.1 5,508,478 + QEN71_RS24760 0.88 -0.1 5,508,478 + QEN71_RS24760 0.88 -0.3 5,508,478 + QEN71_RS24760 0.88 +0.1 5,508,478 + QEN71_RS24760 0.88 +0.0 5,508,478 + QEN71_RS24760 0.88 -0.3 5,508,478 + QEN71_RS24760 0.88 -1.0 5,508,479 - QEN71_RS24760 0.88 -0.8 5,508,479 - QEN71_RS24760 0.88 -0.6 5,508,479 - QEN71_RS24760 0.88 +1.8 5,508,479 - QEN71_RS24760 0.88 -0.0 5,508,512 + -1.4 5,508,512 + +0.2 5,508,512 + -2.2 5,508,513 - -2.3 5,508,513 - -0.3 5,508,513 - +0.6 5,508,513 - -0.6 5,508,513 - +0.0 5,508,513 - +0.3 5,508,524 + -0.1 5,508,524 + -0.4 5,508,524 + +0.2 5,508,524 + -2.4 5,508,524 + -1.5 5,508,524 + +0.8 5,508,525 - -1.2 5,508,525 - -0.1 5,508,525 - -1.9 5,508,536 + -0.2 5,508,536 + +0.3 5,508,537 - -0.2 5,508,560 + -2.1 5,508,560 + -0.2 5,508,560 + +0.2 5,508,560 + -0.9 5,508,560 + -0.2 5,508,560 + +1.1 5,508,560 + +1.0 5,508,560 + -0.4 5,508,560 + -0.4 5,508,560 + -0.8 5,508,561 - +1.9 5,508,561 - -0.1 5,508,561 - -0.7 5,508,561 - +2.1 5,508,561 - +1.1 5,508,561 - -0.8 5,508,561 - +0.5 5,508,777 + -0.3 5,508,912 + QEN71_RS24765 0.17 +0.5 5,508,913 - QEN71_RS24765 0.17 +0.0 5,508,984 + QEN71_RS24765 0.22 +0.5 5,508,984 + QEN71_RS24765 0.22 +0.6 5,508,984 + QEN71_RS24765 0.22 +0.2 5,508,984 + QEN71_RS24765 0.22 -0.7 5,508,985 - QEN71_RS24765 0.22 +1.5 5,509,131 + QEN71_RS24765 0.32 +2.2 5,509,131 + QEN71_RS24765 0.32 -0.6 5,509,131 + QEN71_RS24765 0.32 +1.0 5,509,132 - QEN71_RS24765 0.32 +1.6 5,509,132 - QEN71_RS24765 0.32 -0.1 5,509,132 - QEN71_RS24765 0.32 -0.9 5,509,335 + QEN71_RS24765 0.46 -0.1 5,509,336 - QEN71_RS24765 0.46 -1.8 5,509,336 - QEN71_RS24765 0.46 -0.1 5,509,336 - QEN71_RS24765 0.46 -0.2 5,509,336 - QEN71_RS24765 0.46 +0.3 5,509,342 - QEN71_RS24765 0.47 -0.2 5,509,464 + QEN71_RS24765 0.55 -1.1 5,509,464 + QEN71_RS24765 0.55 +0.1 5,509,526 + QEN71_RS24765 0.59 +1.2 5,509,526 + QEN71_RS24765 0.59 +0.9 5,509,526 + QEN71_RS24765 0.59 +0.1 5,509,526 + QEN71_RS24765 0.59 -2.9 5,509,526 + QEN71_RS24765 0.59 -0.4 5,509,527 - QEN71_RS24765 0.60 -1.3 5,509,527 - QEN71_RS24765 0.60 -0.4 5,509,527 - QEN71_RS24765 0.60 +0.8
Or see this region's nucleotide sequence