Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS23380 and QEN71_RS23385 are separated by 24 nucleotides QEN71_RS23385 and QEN71_RS23390 are separated by 136 nucleotides QEN71_RS23390 and QEN71_RS23395 are separated by 48 nucleotides
QEN71_RS23380: QEN71_RS23380 - GlxA family transcriptional regulator, at 5,208,317 to 5,209,339
_RS23380
QEN71_RS23385: QEN71_RS23385 - ABC transporter ATP-binding protein, at 5,209,364 to 5,210,137
_RS23385
QEN71_RS23390: QEN71_RS23390 - ABC transporter permease, at 5,210,274 to 5,210,984
_RS23390
QEN71_RS23395: QEN71_RS23395 - histidine ABC transporter permease HisQ, at 5,211,033 to 5,211,722
_RS23395
Position (kb) 5210
5211 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5209.735 kb on - strand, within QEN71_RS23385 at 5210.003 kb on - strand, within QEN71_RS23385 at 5210.003 kb on - strand, within QEN71_RS23385 at 5210.245 kb on - strand at 5210.245 kb on - strand at 5210.254 kb on - strand at 5210.294 kb on - strand at 5210.294 kb on - strand at 5210.294 kb on - strand at 5210.294 kb on - strand at 5210.347 kb on - strand, within QEN71_RS23390 at 5210.347 kb on - strand, within QEN71_RS23390 at 5210.356 kb on + strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.357 kb on - strand, within QEN71_RS23390 at 5210.395 kb on + strand, within QEN71_RS23390 at 5210.462 kb on + strand, within QEN71_RS23390 at 5210.492 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.497 kb on + strand, within QEN71_RS23390 at 5210.498 kb on - strand, within QEN71_RS23390 at 5210.498 kb on - strand, within QEN71_RS23390 at 5210.498 kb on - strand, within QEN71_RS23390 at 5210.498 kb on - strand, within QEN71_RS23390 at 5210.498 kb on - strand, within QEN71_RS23390 at 5210.545 kb on + strand, within QEN71_RS23390 at 5210.545 kb on + strand, within QEN71_RS23390 at 5210.546 kb on - strand, within QEN71_RS23390 at 5210.546 kb on - strand, within QEN71_RS23390 at 5210.546 kb on - strand, within QEN71_RS23390 at 5210.638 kb on + strand, within QEN71_RS23390 at 5210.737 kb on + strand, within QEN71_RS23390 at 5210.737 kb on + strand, within QEN71_RS23390 at 5210.737 kb on + strand, within QEN71_RS23390 at 5210.738 kb on - strand, within QEN71_RS23390 at 5210.738 kb on - strand, within QEN71_RS23390 at 5210.749 kb on + strand, within QEN71_RS23390 at 5210.750 kb on - strand, within QEN71_RS23390 at 5210.750 kb on - strand, within QEN71_RS23390 at 5210.770 kb on + strand, within QEN71_RS23390 at 5210.795 kb on - strand, within QEN71_RS23390 at 5210.795 kb on - strand, within QEN71_RS23390 at 5210.800 kb on + strand, within QEN71_RS23390 at 5210.801 kb on - strand, within QEN71_RS23390 at 5210.801 kb on - strand, within QEN71_RS23390 at 5210.944 kb on + strand at 5210.945 kb on - strand at 5211.035 kb on - strand at 5211.118 kb on + strand, within QEN71_RS23395 at 5211.118 kb on + strand, within QEN71_RS23395 at 5211.118 kb on + strand, within QEN71_RS23395 at 5211.118 kb on + strand, within QEN71_RS23395 at 5211.119 kb on - strand, within QEN71_RS23395 at 5211.119 kb on - strand, within QEN71_RS23395 at 5211.119 kb on - strand, within QEN71_RS23395 at 5211.119 kb on - strand, within QEN71_RS23395 at 5211.400 kb on + strand, within QEN71_RS23395 at 5211.400 kb on + strand, within QEN71_RS23395 at 5211.400 kb on + strand, within QEN71_RS23395 at 5211.401 kb on - strand, within QEN71_RS23395 at 5211.409 kb on + strand, within QEN71_RS23395 at 5211.410 kb on - strand, within QEN71_RS23395 at 5211.410 kb on - strand, within QEN71_RS23395 at 5211.410 kb on - strand, within QEN71_RS23395 at 5211.511 kb on + strand, within QEN71_RS23395 at 5211.511 kb on + strand, within QEN71_RS23395 at 5211.511 kb on + strand, within QEN71_RS23395 at 5211.512 kb on - strand, within QEN71_RS23395 at 5211.512 kb on - strand, within QEN71_RS23395 at 5211.512 kb on - strand, within QEN71_RS23395 at 5211.563 kb on + strand, within QEN71_RS23395 at 5211.563 kb on + strand, within QEN71_RS23395 at 5211.564 kb on - strand, within QEN71_RS23395 at 5211.564 kb on - strand, within QEN71_RS23395 at 5211.566 kb on - strand, within QEN71_RS23395 at 5211.566 kb on - strand, within QEN71_RS23395 at 5211.791 kb on + strand at 5211.858 kb on + strand at 5211.858 kb on + strand at 5211.859 kb on - strand at 5211.923 kb on + strand at 5211.923 kb on + strand at 5211.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 5,209,735 - QEN71_RS23385 0.48 +0.5 5,210,003 - QEN71_RS23385 0.83 -0.5 5,210,003 - QEN71_RS23385 0.83 +1.4 5,210,245 - -0.2 5,210,245 - +0.6 5,210,254 - -0.2 5,210,294 - +1.1 5,210,294 - +0.6 5,210,294 - -1.4 5,210,294 - -0.8 5,210,347 - QEN71_RS23390 0.10 +1.0 5,210,347 - QEN71_RS23390 0.10 +1.6 5,210,356 + QEN71_RS23390 0.12 -0.8 5,210,357 - QEN71_RS23390 0.12 -1.7 5,210,357 - QEN71_RS23390 0.12 -1.2 5,210,357 - QEN71_RS23390 0.12 -1.0 5,210,357 - QEN71_RS23390 0.12 -0.1 5,210,357 - QEN71_RS23390 0.12 -0.5 5,210,357 - QEN71_RS23390 0.12 +0.7 5,210,357 - QEN71_RS23390 0.12 +0.7 5,210,357 - QEN71_RS23390 0.12 -1.4 5,210,357 - QEN71_RS23390 0.12 -0.0 5,210,357 - QEN71_RS23390 0.12 +0.2 5,210,395 + QEN71_RS23390 0.17 -0.7 5,210,462 + QEN71_RS23390 0.26 +0.7 5,210,492 + QEN71_RS23390 0.31 +3.0 5,210,497 + QEN71_RS23390 0.31 +0.5 5,210,497 + QEN71_RS23390 0.31 -2.0 5,210,497 + QEN71_RS23390 0.31 -0.5 5,210,497 + QEN71_RS23390 0.31 +0.5 5,210,497 + QEN71_RS23390 0.31 +0.7 5,210,497 + QEN71_RS23390 0.31 -0.7 5,210,497 + QEN71_RS23390 0.31 +0.3 5,210,498 - QEN71_RS23390 0.32 +0.1 5,210,498 - QEN71_RS23390 0.32 -0.3 5,210,498 - QEN71_RS23390 0.32 -0.1 5,210,498 - QEN71_RS23390 0.32 -0.9 5,210,498 - QEN71_RS23390 0.32 -0.0 5,210,545 + QEN71_RS23390 0.38 +0.1 5,210,545 + QEN71_RS23390 0.38 +0.6 5,210,546 - QEN71_RS23390 0.38 +0.2 5,210,546 - QEN71_RS23390 0.38 +0.8 5,210,546 - QEN71_RS23390 0.38 +0.6 5,210,638 + QEN71_RS23390 0.51 -1.5 5,210,737 + QEN71_RS23390 0.65 -0.2 5,210,737 + QEN71_RS23390 0.65 -0.8 5,210,737 + QEN71_RS23390 0.65 -0.1 5,210,738 - QEN71_RS23390 0.65 -0.1 5,210,738 - QEN71_RS23390 0.65 +0.2 5,210,749 + QEN71_RS23390 0.67 -0.5 5,210,750 - QEN71_RS23390 0.67 -0.7 5,210,750 - QEN71_RS23390 0.67 -0.2 5,210,770 + QEN71_RS23390 0.70 -0.2 5,210,795 - QEN71_RS23390 0.73 -0.8 5,210,795 - QEN71_RS23390 0.73 -0.0 5,210,800 + QEN71_RS23390 0.74 +0.2 5,210,801 - QEN71_RS23390 0.74 +0.2 5,210,801 - QEN71_RS23390 0.74 +0.1 5,210,944 + -0.4 5,210,945 - -1.8 5,211,035 - +1.6 5,211,118 + QEN71_RS23395 0.12 -0.4 5,211,118 + QEN71_RS23395 0.12 -0.7 5,211,118 + QEN71_RS23395 0.12 -0.2 5,211,118 + QEN71_RS23395 0.12 -0.3 5,211,119 - QEN71_RS23395 0.12 -0.6 5,211,119 - QEN71_RS23395 0.12 -1.1 5,211,119 - QEN71_RS23395 0.12 +0.3 5,211,119 - QEN71_RS23395 0.12 +0.3 5,211,400 + QEN71_RS23395 0.53 -2.2 5,211,400 + QEN71_RS23395 0.53 +0.4 5,211,400 + QEN71_RS23395 0.53 -0.8 5,211,401 - QEN71_RS23395 0.53 -0.2 5,211,409 + QEN71_RS23395 0.54 -1.1 5,211,410 - QEN71_RS23395 0.55 -0.8 5,211,410 - QEN71_RS23395 0.55 +0.1 5,211,410 - QEN71_RS23395 0.55 +0.3 5,211,511 + QEN71_RS23395 0.69 +0.9 5,211,511 + QEN71_RS23395 0.69 -0.3 5,211,511 + QEN71_RS23395 0.69 -1.0 5,211,512 - QEN71_RS23395 0.69 -0.0 5,211,512 - QEN71_RS23395 0.69 +0.4 5,211,512 - QEN71_RS23395 0.69 +0.6 5,211,563 + QEN71_RS23395 0.77 -1.3 5,211,563 + QEN71_RS23395 0.77 +0.4 5,211,564 - QEN71_RS23395 0.77 +0.0 5,211,564 - QEN71_RS23395 0.77 -0.3 5,211,566 - QEN71_RS23395 0.77 -1.2 5,211,566 - QEN71_RS23395 0.77 +1.2 5,211,791 + +0.8 5,211,858 + -0.2 5,211,858 + -0.4 5,211,859 - +1.6 5,211,923 + +1.0 5,211,923 + +0.8 5,211,923 + -0.7
Or see this region's nucleotide sequence