Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18405

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
4,097,512	+		QEN71_RS18400	0.45	-1.3
4,097,512	+		QEN71_RS18400	0.45	-0.3
4,097,512	+		QEN71_RS18400	0.45	+0.6
4,097,513	-		QEN71_RS18400	0.45	+0.3
4,097,513	-		QEN71_RS18400	0.45	+0.2
4,097,527	+		QEN71_RS18400	0.47	-2.5
4,097,527	+		QEN71_RS18400	0.47	-0.5
4,097,527	+		QEN71_RS18400	0.47	-0.5
4,097,527	+		QEN71_RS18400	0.47	+0.2
4,097,527	+		QEN71_RS18400	0.47	+0.4
4,097,527	+		QEN71_RS18400	0.47	-0.2
4,097,528	-		QEN71_RS18400	0.47	-0.9
4,097,528	-		QEN71_RS18400	0.47	-0.1
4,097,528	-		QEN71_RS18400	0.47	+1.3
4,097,528	-		QEN71_RS18400	0.47	+1.4
4,097,528	-		QEN71_RS18400	0.47	-0.7
4,097,528	-		QEN71_RS18400	0.47	+0.7
4,097,528	-		QEN71_RS18400	0.47	+0.3
4,097,528	-		QEN71_RS18400	0.47	+0.7
4,097,770	+		QEN71_RS18400	0.74	-1.1
4,097,770	+		QEN71_RS18400	0.74	+0.2
4,097,770	+		QEN71_RS18400	0.74	-0.2
4,097,770	+		QEN71_RS18400	0.74	+1.3
4,097,770	+		QEN71_RS18400	0.74	+0.4
4,097,770	+		QEN71_RS18400	0.74	-0.4
4,097,770	+		QEN71_RS18400	0.74	+0.4
4,097,771	-		QEN71_RS18400	0.74	+1.1
4,097,771	-		QEN71_RS18400	0.74	-0.1
4,097,771	-		QEN71_RS18400	0.74	-0.4
4,097,771	-		QEN71_RS18400	0.74	-3.6
4,097,771	-		QEN71_RS18400	0.74	-0.5
4,097,771	-		QEN71_RS18400	0.74	-1.0
4,097,773	+		QEN71_RS18400	0.74	-0.4
4,097,773	+		QEN71_RS18400	0.74	-0.9
4,097,774	-		QEN71_RS18400	0.74	+0.3
4,097,774	-		QEN71_RS18400	0.74	-0.8
4,097,896	+		QEN71_RS18400	0.88	-0.3
4,097,897	-		QEN71_RS18400	0.88	+0.4
4,097,920	-				+0.5
4,097,991	+				+1.6
4,097,992	-				-0.6
4,098,123	-				+1.0
4,098,144	+				-0.7
4,098,144	+				-0.7
4,098,145	-				-1.5
4,098,145	-				+0.3
4,098,159	+				-1.6
4,098,159	+				-0.3
4,098,160	-				-0.2
4,098,160	-				-0.5
4,098,160	-				+0.8
4,098,160	-				-0.5
4,098,162	+				-2.0
4,098,162	+				+0.6
4,098,162	+				-3.1
4,098,162	+				-0.7
4,098,162	+				+1.2
4,098,162	+				-1.7
4,098,162	+				+0.7
4,098,163	-				-0.8
4,098,163	-				-0.4
4,098,225	+				-0.6
4,098,226	-				-0.5
4,098,301	-		QEN71_RS18405	0.12	-1.0
4,098,315	+		QEN71_RS18405	0.13	-0.3
4,098,315	+		QEN71_RS18405	0.13	-1.9
4,098,315	+		QEN71_RS18405	0.13	-0.2
4,098,315	+		QEN71_RS18405	0.13	-0.7
4,098,315	+		QEN71_RS18405	0.13	-1.0
4,098,315	+		QEN71_RS18405	0.13	-2.6
4,098,315	+		QEN71_RS18405	0.13	-1.5
4,098,316	-		QEN71_RS18405	0.13	-1.3
4,098,316	-		QEN71_RS18405	0.13	+1.7
4,098,342	+		QEN71_RS18405	0.15	-1.1
4,098,343	-		QEN71_RS18405	0.15	-0.6
4,098,369	+		QEN71_RS18405	0.18	-1.1
4,098,369	+		QEN71_RS18405	0.18	-1.1
4,098,369	+		QEN71_RS18405	0.18	-0.4
4,098,370	-		QEN71_RS18405	0.18	-0.7
4,098,402	+		QEN71_RS18405	0.20	-0.8
4,098,402	+		QEN71_RS18405	0.20	-0.6
4,098,402	+		QEN71_RS18405	0.20	+0.4
4,098,402	+		QEN71_RS18405	0.20	-0.8
4,098,402	+		QEN71_RS18405	0.20	-0.6
4,098,402	+		QEN71_RS18405	0.20	-0.4
4,098,402	+		QEN71_RS18405	0.20	-1.3
4,098,403	-		QEN71_RS18405	0.21	-0.6
4,098,403	-		QEN71_RS18405	0.21	-0.4
4,098,403	-		QEN71_RS18405	0.21	-1.6
4,098,403	-		QEN71_RS18405	0.21	-0.2
4,098,403	-		QEN71_RS18405	0.21	+0.2
4,098,408	+		QEN71_RS18405	0.21	+0.1
4,098,408	+		QEN71_RS18405	0.21	-2.0
4,098,408	+		QEN71_RS18405	0.21	-0.6
4,098,408	+		QEN71_RS18405	0.21	-1.4
4,098,408	+		QEN71_RS18405	0.21	+0.0
4,098,408	+		QEN71_RS18405	0.21	-0.2
4,098,409	-		QEN71_RS18405	0.21	+0.3
4,098,409	-		QEN71_RS18405	0.21	-0.8
4,098,444	+		QEN71_RS18405	0.24	-1.4
4,098,445	-		QEN71_RS18405	0.24	-1.5
4,098,454	-		QEN71_RS18405	0.25	-0.5
4,098,454	-		QEN71_RS18405	0.25	-0.8
4,098,513	+		QEN71_RS18405	0.30	+1.0
4,098,513	+		QEN71_RS18405	0.30	+0.9
4,098,513	+		QEN71_RS18405	0.30	+0.0
4,098,513	+		QEN71_RS18405	0.30	-1.2
4,098,513	+		QEN71_RS18405	0.30	+0.2
4,098,513	+		QEN71_RS18405	0.30	+0.8
4,098,514	-		QEN71_RS18405	0.30	-0.2
4,098,514	-		QEN71_RS18405	0.30	-0.8
4,098,514	-		QEN71_RS18405	0.30	-0.8
4,098,514	-		QEN71_RS18405	0.30	-1.1
4,098,514	-		QEN71_RS18405	0.30	-2.2
4,098,514	-		QEN71_RS18405	0.30	-1.0
4,098,526	+		QEN71_RS18405	0.31	-0.5
4,098,526	+		QEN71_RS18405	0.31	+0.4
4,098,526	+		QEN71_RS18405	0.31	+0.3
4,098,526	+		QEN71_RS18405	0.31	-1.0
4,098,526	+		QEN71_RS18405	0.31	-0.2
4,098,526	+		QEN71_RS18405	0.31	-1.6
4,098,526	+		QEN71_RS18405	0.31	-0.4
4,098,527	-		QEN71_RS18405	0.31	-0.1
4,098,527	-		QEN71_RS18405	0.31	-2.0
4,098,527	-		QEN71_RS18405	0.31	-0.7
4,098,527	-		QEN71_RS18405	0.31	+2.4
4,098,527	-		QEN71_RS18405	0.31	-0.1
4,098,527	-		QEN71_RS18405	0.31	-0.1
4,098,527	-		QEN71_RS18405	0.31	-0.7
4,098,529	-		QEN71_RS18405	0.31	+0.0
4,098,529	-		QEN71_RS18405	0.31	-1.2
4,098,529	-		QEN71_RS18405	0.31	+0.1
4,098,561	+		QEN71_RS18405	0.34	-0.7
4,098,562	-		QEN71_RS18405	0.34	-1.3
4,098,562	-		QEN71_RS18405	0.34	+0.4
4,098,562	-		QEN71_RS18405	0.34	-0.7
4,098,562	-		QEN71_RS18405	0.34	+1.3
4,098,562	-		QEN71_RS18405	0.34	-0.3
4,098,607	-		QEN71_RS18405	0.38	-0.2
4,098,667	+		QEN71_RS18405	0.43	-1.6
4,098,667	+		QEN71_RS18405	0.43	-0.3
4,098,667	+		QEN71_RS18405	0.43	-1.1
4,098,668	-		QEN71_RS18405	0.43	-0.5
4,098,668	-		QEN71_RS18405	0.43	+0.4
4,098,668	-		QEN71_RS18405	0.43	-0.7
4,098,712	-		QEN71_RS18405	0.47	+1.0
4,098,712	-		QEN71_RS18405	0.47	-1.0
4,098,712	-		QEN71_RS18405	0.47	+0.3
4,098,807	+		QEN71_RS18405	0.55	-1.0
4,098,807	+		QEN71_RS18405	0.55	-0.4
4,098,807	+		QEN71_RS18405	0.55	-0.2
4,098,807	+		QEN71_RS18405	0.55	-0.6
4,098,807	+		QEN71_RS18405	0.55	+0.9
4,098,807	+		QEN71_RS18405	0.55	-0.4
4,098,807	+		QEN71_RS18405	0.55	-0.3
4,098,807	+		QEN71_RS18405	0.55	-2.1
4,098,807	+		QEN71_RS18405	0.55	-0.5
4,098,807	+		QEN71_RS18405	0.55	+0.0
4,098,807	+		QEN71_RS18405	0.55	+0.4
4,098,807	+		QEN71_RS18405	0.55	-1.8
4,098,807	+		QEN71_RS18405	0.55	+0.3
4,098,807	+		QEN71_RS18405	0.55	-0.1
4,098,807	+		QEN71_RS18405	0.55	-2.0
4,098,808	-		QEN71_RS18405	0.55	-0.1
4,098,808	-		QEN71_RS18405	0.55	+0.3
4,098,808	-		QEN71_RS18405	0.55	-0.1
4,098,808	-		QEN71_RS18405	0.55	-0.8
4,098,808	-		QEN71_RS18405	0.55	-1.8
4,098,808	-		QEN71_RS18405	0.55	-0.1
4,098,808	-		QEN71_RS18405	0.55	-0.2
4,098,808	-		QEN71_RS18405	0.55	+0.5
4,098,808	-		QEN71_RS18405	0.55	+1.1
4,098,849	+		QEN71_RS18405	0.58	-0.5
4,098,849	+		QEN71_RS18405	0.58	-0.8
4,098,849	+		QEN71_RS18405	0.58	-0.1
4,098,850	-		QEN71_RS18405	0.58	-0.6
4,098,850	-		QEN71_RS18405	0.58	-0.5
4,098,850	-		QEN71_RS18405	0.58	-1.6
4,098,850	-		QEN71_RS18405	0.58	-0.8
4,098,850	-		QEN71_RS18405	0.58	-2.0
4,098,850	-		QEN71_RS18405	0.58	-1.4
4,098,850	-		QEN71_RS18405	0.58	-1.0
4,098,868	+		QEN71_RS18405	0.60	-0.9
4,098,868	+		QEN71_RS18405	0.60	-2.3
4,098,927	+		QEN71_RS18405	0.65	-0.5
4,098,927	+		QEN71_RS18405	0.65	-1.2
4,098,927	+		QEN71_RS18405	0.65	+0.3
4,098,927	+		QEN71_RS18405	0.65	-1.1
4,098,927	+		QEN71_RS18405	0.65	+0.6
4,098,927	+		QEN71_RS18405	0.65	-0.5
4,098,927	+		QEN71_RS18405	0.65	+0.3
4,098,927	+		QEN71_RS18405	0.65	-1.3
4,098,928	-		QEN71_RS18405	0.65	-0.7
4,098,928	-		QEN71_RS18405	0.65	-1.3
4,098,928	-		QEN71_RS18405	0.65	-0.6
4,098,928	-		QEN71_RS18405	0.65	-1.1
4,098,928	-		QEN71_RS18405	0.65	-1.8
4,098,928	-		QEN71_RS18405	0.65	-1.6
4,098,928	-		QEN71_RS18405	0.65	+0.4
4,098,928	-		QEN71_RS18405	0.65	-1.9
4,098,928	-		QEN71_RS18405	0.65	-0.1
4,098,928	-		QEN71_RS18405	0.65	-0.6
4,098,928	-		QEN71_RS18405	0.65	-0.6
4,098,928	-		QEN71_RS18405	0.65	-0.1
4,098,972	+		QEN71_RS18405	0.69	-1.0
4,098,972	+		QEN71_RS18405	0.69	-0.8
4,098,973	-		QEN71_RS18405	0.69	-1.1
4,098,973	-		QEN71_RS18405	0.69	-0.4
4,098,994	+		QEN71_RS18405	0.71	-0.3
4,098,999	+		QEN71_RS18405	0.71	+1.1
4,098,999	+		QEN71_RS18405	0.71	-0.5
4,099,000	-		QEN71_RS18405	0.71	-0.4
4,099,000	-		QEN71_RS18405	0.71	-0.1
4,099,000	-		QEN71_RS18405	0.71	-1.0
4,099,023	+		QEN71_RS18405	0.73	-0.4
4,099,023	+		QEN71_RS18405	0.73	+0.2
4,099,023	+		QEN71_RS18405	0.73	+0.1
4,099,023	+		QEN71_RS18405	0.73	-0.2
4,099,023	+		QEN71_RS18405	0.73	-0.1
4,099,023	+		QEN71_RS18405	0.73	+1.9
4,099,023	+		QEN71_RS18405	0.73	-0.7
4,099,023	+		QEN71_RS18405	0.73	+0.2
4,099,023	+		QEN71_RS18405	0.73	-0.1
4,099,023	+		QEN71_RS18405	0.73	-0.6
4,099,023	+		QEN71_RS18405	0.73	-1.3
4,099,024	-		QEN71_RS18405	0.73	+0.6
4,099,024	-		QEN71_RS18405	0.73	+0.5
4,099,024	-		QEN71_RS18405	0.73	+2.0
4,099,024	-		QEN71_RS18405	0.73	-1.5
4,099,024	-		QEN71_RS18405	0.73	+0.3
4,099,024	-		QEN71_RS18405	0.73	+0.9
4,099,024	-		QEN71_RS18405	0.73	-0.6
4,099,024	-		QEN71_RS18405	0.73	-0.2
4,099,024	-		QEN71_RS18405	0.73	+0.3
4,099,024	-		QEN71_RS18405	0.73	+0.2
4,099,024	-		QEN71_RS18405	0.73	+0.3
4,099,060	-		QEN71_RS18405	0.76	-0.1
4,099,060	-		QEN71_RS18405	0.76	-0.4
4,099,060	-		QEN71_RS18405	0.76	-2.2
4,099,162	+		QEN71_RS18405	0.85	-1.7
4,099,163	-		QEN71_RS18405	0.85	-1.1
4,099,163	-		QEN71_RS18405	0.85	-1.4
4,099,163	-		QEN71_RS18405	0.85	-0.4
4,099,227	+				-0.4
4,099,227	+				+1.1
4,099,227	+				+0.5
4,099,227	+				-0.1
4,099,228	-				+0.0
4,099,228	-				-0.5
4,099,228	-				-1.3
4,099,228	-				-0.3
4,099,228	-				-0.3
4,099,228	-				-0.4
4,099,254	+				+0.2
4,099,254	+				+1.1
4,099,254	+				-0.5
4,099,254	+				-1.2
4,099,254	+				+0.5
4,099,254	+				-0.5
4,099,254	+				+0.2
4,099,255	-				+0.9
4,099,255	-				-0.5
4,099,255	-				-1.5
4,099,255	-				-0.5
4,099,255	-				+0.3
4,099,255	-				+0.6
4,099,255	-				+1.0
4,099,255	-				-1.0
4,099,388	+				+0.2
4,099,408	+				-0.1
4,099,408	+				-1.0
4,099,408	+				-0.7
4,099,408	+				-2.1
4,099,409	-				-1.0
4,099,409	-				+0.8
4,099,433	-				-0.6
4,099,433	-				-2.6
4,099,433	-				-0.1
4,099,454	+				-1.6
4,099,455	-				+1.5
4,099,455	-				+0.2
4,099,465	+				-0.2
4,099,465	+				-0.9
4,099,465	+				+0.0
4,099,466	-				-0.4
4,099,466	-				-1.3
4,099,506	+				-0.1
4,099,506	+				+1.0
4,099,506	+				-0.2
4,099,518	+				-2.0
4,099,518	+				+0.3
4,099,525	+				+0.3
4,099,525	+				-0.7
4,099,525	+				+0.3
4,099,525	+				-1.2
4,099,525	+				-0.0
4,099,525	+				+0.6
4,099,525	+				+0.0
4,099,526	-				-0.1
4,099,526	-				+0.0
4,099,526	-				-1.2
4,099,537	+				-0.8
4,099,537	+				+0.3
4,099,538	-				+0.8
4,099,538	-				+0.7
4,099,593	+				+1.9
4,099,593	+				+0.1
4,099,594	-				+0.2
4,099,594	-				+1.0
4,099,594	-				-0.5
4,099,594	-				-0.7
4,099,594	-				+0.0
4,099,598	+				+0.4
4,099,598	+				-0.8
4,099,598	+				+0.7
4,099,598	+				+0.2
4,099,598	+				-0.0
4,099,598	+				-0.5
4,099,599	-				-0.1
4,099,599	-				-0.1
4,099,607	-				-0.5
4,099,632	+				+1.7
4,099,632	+				-0.4
4,099,632	+				+0.1
4,099,632	+				+0.3
4,099,633	-				+1.0
4,099,633	-				+0.0
4,099,633	-				-0.4
4,099,633	-				-1.1
4,099,633	-				-0.3
4,099,633	-				-0.3
4,099,633	-				-2.7
4,099,633	-				-1.5
4,099,634	+				-0.0
4,099,634	+				-1.3
4,099,636	+				-0.1
4,099,636	+				-1.1
4,099,636	+				+0.0
4,099,636	+				-1.0
4,099,636	+				-0.1
4,099,636	+				+0.4
4,099,636	+				-0.2
4,099,636	+				+0.3
4,099,637	-				+0.0
4,099,637	-				-0.2
4,099,637	-				-0.3
4,099,637	-				-1.6
4,099,637	-				-0.2
4,099,637	-				+0.6
4,099,637	-				-0.0
4,099,637	-				-1.7
4,099,637	-				-0.5
4,099,647	+				-0.7
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