Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18335

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
4,078,744	-		QEN71_RS18325	0.60	+0.1
4,078,997	-		QEN71_RS18325	0.87	-0.1
4,078,997	-		QEN71_RS18325	0.87	+1.2
4,079,069	+				-0.5
4,079,069	+				-1.8
4,079,070	-				-0.8
4,079,070	-				+0.1
4,079,087	+				-1.5
4,079,088	-				-0.8
4,079,088	-				-1.2
4,079,158	+				-0.0
4,079,187	+				-1.2
4,079,187	+				-0.9
4,079,452	+		QEN71_RS18330	0.86	+0.0
4,079,453	-		QEN71_RS18330	0.87	-1.6
4,079,453	-		QEN71_RS18330	0.87	-0.5
4,079,561	+				-1.9
4,079,561	+				+0.5
4,079,561	+				+0.3
4,079,561	+				-0.0
4,079,562	-				+0.4
4,079,562	-				-1.2
4,079,562	-				-0.0
4,079,642	+				-0.3
4,079,643	-				-0.7
4,079,643	-				+0.4
4,079,643	-				-0.9
4,079,643	-				+0.2
4,079,643	-				+0.6
4,079,643	-				+0.3
4,079,694	+				-0.0
4,079,694	+				+1.1
4,079,694	+				-1.5
4,079,694	+				-0.1
4,079,695	-				-1.0
4,079,696	+				-0.9
4,079,696	+				-0.9
4,079,696	+				+1.3
4,079,696	+				-0.9
4,079,697	-				-0.1
4,079,697	-				+0.9
4,079,697	-				+0.5
4,079,697	-				+0.2
4,079,738	+		QEN71_RS18335	0.12	-0.2
4,079,738	+		QEN71_RS18335	0.12	-1.9
4,079,738	+		QEN71_RS18335	0.12	-0.1
4,079,738	+		QEN71_RS18335	0.12	-1.5
4,079,738	+		QEN71_RS18335	0.12	-1.6
4,079,739	-		QEN71_RS18335	0.12	-1.0
4,079,756	+		QEN71_RS18335	0.13	-0.6
4,079,852	+		QEN71_RS18335	0.19	+0.1
4,079,852	+		QEN71_RS18335	0.19	-1.1
4,079,852	+		QEN71_RS18335	0.19	-0.7
4,079,852	+		QEN71_RS18335	0.19	-0.5
4,079,852	+		QEN71_RS18335	0.19	+0.3
4,079,852	+		QEN71_RS18335	0.19	+0.9
4,079,853	-		QEN71_RS18335	0.19	-1.2
4,079,853	-		QEN71_RS18335	0.19	-0.3
4,079,853	-		QEN71_RS18335	0.19	-1.2
4,079,853	-		QEN71_RS18335	0.19	+0.3
4,079,853	-		QEN71_RS18335	0.19	-0.1
4,079,853	-		QEN71_RS18335	0.19	-0.1
4,079,868	+		QEN71_RS18335	0.20	-0.1
4,079,868	+		QEN71_RS18335	0.20	-0.1
4,079,869	-		QEN71_RS18335	0.20	+0.1
4,079,869	-		QEN71_RS18335	0.20	+0.4
4,079,869	-		QEN71_RS18335	0.20	-2.0
4,079,869	-		QEN71_RS18335	0.20	+0.6
4,079,869	-		QEN71_RS18335	0.20	+0.9
4,079,870	+		QEN71_RS18335	0.21	-0.1
4,079,871	-		QEN71_RS18335	0.21	-0.7
4,079,871	-		QEN71_RS18335	0.21	+0.2
4,079,871	-		QEN71_RS18335	0.21	-0.8
4,079,906	+		QEN71_RS18335	0.23	+0.9
4,079,906	+		QEN71_RS18335	0.23	+0.0
4,079,907	-		QEN71_RS18335	0.23	+1.6
4,079,907	-		QEN71_RS18335	0.23	+0.6
4,079,933	+		QEN71_RS18335	0.25	+0.3
4,079,933	+		QEN71_RS18335	0.25	+0.1
4,079,933	+		QEN71_RS18335	0.25	-1.5
4,079,934	-		QEN71_RS18335	0.25	-1.1
4,079,934	-		QEN71_RS18335	0.25	-0.2
4,079,934	-		QEN71_RS18335	0.25	+0.5
4,079,934	-		QEN71_RS18335	0.25	-1.3
4,079,934	-		QEN71_RS18335	0.25	-1.7
4,079,934	-		QEN71_RS18335	0.25	-1.0
4,079,958	-		QEN71_RS18335	0.26	-0.7
4,080,039	+		QEN71_RS18335	0.32	-0.4
4,080,039	+		QEN71_RS18335	0.32	-0.1
4,080,039	+		QEN71_RS18335	0.32	+1.6
4,080,040	-		QEN71_RS18335	0.32	-2.5
4,080,040	-		QEN71_RS18335	0.32	-0.3
4,080,041	+		QEN71_RS18335	0.32	-0.7
4,080,041	+		QEN71_RS18335	0.32	+1.2
4,080,042	-		QEN71_RS18335	0.32	-0.1
4,080,042	-		QEN71_RS18335	0.32	+0.4
4,080,042	-		QEN71_RS18335	0.32	+1.1
4,080,057	+		QEN71_RS18335	0.33	-0.1
4,080,057	+		QEN71_RS18335	0.33	+0.1
4,080,057	+		QEN71_RS18335	0.33	-0.7
4,080,057	+		QEN71_RS18335	0.33	+0.8
4,080,058	-		QEN71_RS18335	0.33	-0.3
4,080,058	-		QEN71_RS18335	0.33	+0.5
4,080,058	-		QEN71_RS18335	0.33	-1.8
4,080,058	-		QEN71_RS18335	0.33	+0.5
4,080,095	+		QEN71_RS18335	0.35	-0.9
4,080,096	-		QEN71_RS18335	0.36	-1.8
4,080,096	-		QEN71_RS18335	0.36	+0.5
4,080,096	-		QEN71_RS18335	0.36	+0.9
4,080,096	-		QEN71_RS18335	0.36	-0.5
4,080,197	+		QEN71_RS18335	0.42	+1.1
4,080,198	-		QEN71_RS18335	0.42	-0.7
4,080,224	+		QEN71_RS18335	0.44	+1.2
4,080,245	+		QEN71_RS18335	0.45	-1.3
4,080,275	+		QEN71_RS18335	0.47	+0.9
4,080,276	-		QEN71_RS18335	0.47	+0.9
4,080,379	+		QEN71_RS18335	0.54	-0.9
4,080,458	+		QEN71_RS18335	0.60	-0.6
4,080,459	-		QEN71_RS18335	0.60	-0.6
4,080,497	+		QEN71_RS18335	0.62	-0.1
4,080,497	+		QEN71_RS18335	0.62	+0.5
4,080,497	+		QEN71_RS18335	0.62	-1.0
4,080,497	+		QEN71_RS18335	0.62	+0.5
4,080,498	-		QEN71_RS18335	0.62	+0.5
4,080,498	-		QEN71_RS18335	0.62	-0.3
4,080,498	-		QEN71_RS18335	0.62	+0.1
4,080,498	-		QEN71_RS18335	0.62	+1.3
4,080,498	-		QEN71_RS18335	0.62	-2.0
4,080,498	-		QEN71_RS18335	0.62	+0.6
4,080,498	-		QEN71_RS18335	0.62	-0.7
4,080,498	-		QEN71_RS18335	0.62	-0.0
4,080,498	-		QEN71_RS18335	0.62	-0.9
4,080,510	-		QEN71_RS18335	0.63	-0.9
4,080,622	+		QEN71_RS18335	0.70	-2.2
4,080,642	+		QEN71_RS18335	0.72	+0.5
4,080,642	+		QEN71_RS18335	0.72	-0.1
4,080,642	+		QEN71_RS18335	0.72	-0.7
4,080,642	+		QEN71_RS18335	0.72	+1.4
4,080,642	+		QEN71_RS18335	0.72	-0.1
4,080,642	+		QEN71_RS18335	0.72	+1.0
4,080,642	+		QEN71_RS18335	0.72	-0.5
4,080,642	+		QEN71_RS18335	0.72	-0.1
4,080,642	+		QEN71_RS18335	0.72	-1.1
4,080,642	+		QEN71_RS18335	0.72	-0.3
4,080,643	-		QEN71_RS18335	0.72	+0.6
4,080,643	-		QEN71_RS18335	0.72	+0.4
4,080,643	-		QEN71_RS18335	0.72	-0.6
4,080,643	-		QEN71_RS18335	0.72	+0.1
4,080,643	-		QEN71_RS18335	0.72	-0.7
4,080,643	-		QEN71_RS18335	0.72	-1.0
4,080,643	-		QEN71_RS18335	0.72	+0.4
4,080,644	+		QEN71_RS18335	0.72	+0.3
4,080,644	+		QEN71_RS18335	0.72	-0.7
4,080,725	+		QEN71_RS18335	0.77	-0.7
4,081,072	+				+2.1
4,081,072	+				-1.8
4,081,072	+				-1.3
4,081,072	+				-0.4
4,081,072	+				-1.6
4,081,073	-				-1.1
4,081,085	+				-0.1
4,081,085	+				-0.5
4,081,086	-				+0.2
4,081,086	-				-0.6
4,081,086	-				-1.5
4,081,086	-				-0.8
4,081,086	-				-2.2
4,081,213	+				-0.1
4,081,213	+				-1.1
4,081,213	+				-0.6
4,081,213	+				+0.5
4,081,213	+				-0.2
4,081,214	-				+0.7
4,081,214	-				+0.0
4,081,214	-				+0.6
4,081,214	-				+0.3
4,081,241	+				-0.3
4,081,241	+				-0.9
4,081,242	-				+0.5
4,081,242	-				+0.5
4,081,258	+				-0.9
4,081,258	+				-0.5
4,081,258	+				-0.6
4,081,259	-				+0.7
4,081,259	-				+1.5
4,081,458	+		QEN71_RS18340	0.23	-1.5
4,081,458	+		QEN71_RS18340	0.23	-0.7
4,081,458	+		QEN71_RS18340	0.23	+1.4
4,081,459	-		QEN71_RS18340	0.24	+0.5
4,081,459	-		QEN71_RS18340	0.24	+0.9
4,081,521	+		QEN71_RS18340	0.30	+0.5
4,081,521	+		QEN71_RS18340	0.30	+1.3
4,081,521	+		QEN71_RS18340	0.30	+1.2
4,081,522	-		QEN71_RS18340	0.30	+0.7
4,081,522	-		QEN71_RS18340	0.30	-0.8
4,081,522	-		QEN71_RS18340	0.30	+1.5
4,081,522	-		QEN71_RS18340	0.30	+0.2
4,081,522	-		QEN71_RS18340	0.30	+1.0
4,081,522	-		QEN71_RS18340	0.30	+1.2
4,081,522	-		QEN71_RS18340	0.30	-1.0
4,081,960	-		QEN71_RS18340	0.74	-1.1
4,082,011	+		QEN71_RS18340	0.79	+0.0
4,082,011	+		QEN71_RS18340	0.79	+1.0
4,082,012	-		QEN71_RS18340	0.79	+0.1