Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS16745

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
3,708,141	+				-0.7
3,708,141	+				+0.4
3,708,141	+				+0.2
3,708,142	-				-0.1
3,708,142	-				-0.4
3,708,142	-				-0.3
3,708,142	-				-0.7
3,708,153	-				-0.2
3,708,162	+				-1.6
3,708,162	+				-0.1
3,708,163	-				-0.1
3,708,163	-				-1.1
3,708,195	+				+0.4
3,708,196	-				-1.6
3,708,196	-				+0.1
3,708,196	-				+0.3
3,708,230	-				-0.0
3,708,233	+				-0.4
3,708,264	+				-0.2
3,708,264	+				+0.6
3,708,265	-				-0.2
3,708,265	-				+0.1
3,708,265	-				-0.3
3,708,265	-				-0.3
3,708,267	+				-0.4
3,708,459	-		QEN71_RS16740	0.11	+0.1
3,708,459	-		QEN71_RS16740	0.11	-0.1
3,708,584	+		QEN71_RS16740	0.30	-0.1
3,708,584	+		QEN71_RS16740	0.30	-0.3
3,708,585	-		QEN71_RS16740	0.31	+1.6
3,708,585	-		QEN71_RS16740	0.31	-1.4
3,708,605	+		QEN71_RS16740	0.34	+0.5
3,708,605	+		QEN71_RS16740	0.34	+0.6
3,708,605	+		QEN71_RS16740	0.34	+0.5
3,708,606	-		QEN71_RS16740	0.34	-1.0
3,708,606	-		QEN71_RS16740	0.34	-0.6
3,708,620	+		QEN71_RS16740	0.36	-1.5
3,708,620	+		QEN71_RS16740	0.36	+0.5
3,708,620	+		QEN71_RS16740	0.36	+0.1
3,708,621	-		QEN71_RS16740	0.36	+0.5
3,708,749	+		QEN71_RS16740	0.56	-1.3
3,708,749	+		QEN71_RS16740	0.56	+0.6
3,708,749	+		QEN71_RS16740	0.56	-1.1
3,708,749	+		QEN71_RS16740	0.56	-0.2
3,708,750	-		QEN71_RS16740	0.56	-1.0
3,708,750	-		QEN71_RS16740	0.56	+0.0
3,708,750	-		QEN71_RS16740	0.56	-0.5
3,708,788	+		QEN71_RS16740	0.62	+0.7
3,708,806	+		QEN71_RS16740	0.65	-1.3
3,708,806	+		QEN71_RS16740	0.65	+0.5
3,708,806	+		QEN71_RS16740	0.65	-0.6
3,708,806	+		QEN71_RS16740	0.65	+0.8
3,708,807	-		QEN71_RS16740	0.65	-0.1
3,708,807	-		QEN71_RS16740	0.65	+1.0
3,708,807	-		QEN71_RS16740	0.65	+1.8
3,708,807	-		QEN71_RS16740	0.65	+0.7
3,708,881	+		QEN71_RS16740	0.76	+0.2
3,708,881	+		QEN71_RS16740	0.76	+1.1
3,708,881	+		QEN71_RS16740	0.76	-0.1
3,708,881	+		QEN71_RS16740	0.76	+1.4
3,708,881	+		QEN71_RS16740	0.76	+0.6
3,708,881	+		QEN71_RS16740	0.76	+0.5
3,708,881	+		QEN71_RS16740	0.76	-1.6
3,708,881	+		QEN71_RS16740	0.76	+1.5
3,708,881	+		QEN71_RS16740	0.76	+0.4
3,708,882	-		QEN71_RS16740	0.76	-0.3
3,708,882	-		QEN71_RS16740	0.76	+1.7
3,708,882	-		QEN71_RS16740	0.76	+1.6
3,708,882	-		QEN71_RS16740	0.76	-1.6
3,708,882	-		QEN71_RS16740	0.76	+0.7
3,708,882	-		QEN71_RS16740	0.76	-1.2
3,708,882	-		QEN71_RS16740	0.76	+0.3
3,708,882	-		QEN71_RS16740	0.76	+1.5
3,708,882	-		QEN71_RS16740	0.76	+0.7
3,709,025	+				-0.3
3,709,025	+				+0.3
3,709,025	+				+0.5
3,709,025	+				-0.3
3,709,026	-				-1.4
3,709,026	-				-0.1
3,709,041	+				+0.4
3,709,041	+				-0.4
3,709,041	+				-0.5
3,709,041	+				-1.2
3,709,041	+				-0.3
3,709,042	-				+0.6
3,709,042	-				+2.1
3,709,042	-				-0.7
3,709,045	+				-1.0
3,709,045	+				-0.4
3,709,045	+				+0.4
3,709,045	+				+0.6
3,709,046	-				-2.3
3,709,212	+		QEN71_RS16745	0.18	+0.0
3,709,213	-		QEN71_RS16745	0.18	+0.6
3,709,213	-		QEN71_RS16745	0.18	-0.5
3,709,213	-		QEN71_RS16745	0.18	-2.5
3,709,213	-		QEN71_RS16745	0.18	-0.0
3,709,296	+		QEN71_RS16745	0.32	+0.8
3,709,296	+		QEN71_RS16745	0.32	+2.5
3,709,297	-		QEN71_RS16745	0.32	-0.7
3,709,385	+		QEN71_RS16745	0.47	-0.5
3,709,386	-		QEN71_RS16745	0.47	-1.1
3,709,386	-		QEN71_RS16745	0.47	-1.6
3,709,388	+		QEN71_RS16745	0.48	-0.3
3,709,430	+		QEN71_RS16745	0.55	+0.1
3,709,430	+		QEN71_RS16745	0.55	+0.1
3,709,527	+		QEN71_RS16745	0.71	-1.6
3,709,527	+		QEN71_RS16745	0.71	+0.0
3,709,527	+		QEN71_RS16745	0.71	+0.3
3,709,527	+		QEN71_RS16745	0.71	+0.7
3,709,527	+		QEN71_RS16745	0.71	+0.1
3,709,527	+		QEN71_RS16745	0.71	+0.2
3,709,527	+		QEN71_RS16745	0.71	+0.6
3,709,527	+		QEN71_RS16745	0.71	+0.7
3,709,528	-		QEN71_RS16745	0.71	-0.8
3,709,528	-		QEN71_RS16745	0.71	-0.6
3,709,528	-		QEN71_RS16745	0.71	-1.2
3,709,528	-		QEN71_RS16745	0.71	+0.1
3,709,528	-		QEN71_RS16745	0.71	-0.3
3,709,528	-		QEN71_RS16745	0.71	-0.7
3,709,528	-		QEN71_RS16745	0.71	-0.7
3,709,528	-		QEN71_RS16745	0.71	+0.0
3,709,529	+		QEN71_RS16745	0.72	+0.1
3,709,529	+		QEN71_RS16745	0.72	+1.6
3,709,529	+		QEN71_RS16745	0.72	-0.4
3,709,530	-		QEN71_RS16745	0.72	-1.3
3,709,530	-		QEN71_RS16745	0.72	+0.7
3,709,530	-		QEN71_RS16745	0.72	-0.3
3,709,530	-		QEN71_RS16745	0.72	-0.4
3,709,530	-		QEN71_RS16745	0.72	-0.1
3,709,530	-		QEN71_RS16745	0.72	-0.6
3,709,649	+				+0.2
3,709,770	+				-0.3
3,709,770	+				+0.3
3,709,770	+				+0.3
3,709,771	-				+1.1
3,709,771	-				-0.1
3,709,771	-				-1.1
3,709,771	-				-0.1
3,709,771	-				-0.6
3,709,787	+				-0.1
3,709,956	+				-2.0
3,709,956	+				+0.2
3,709,956	+				-1.6
3,709,956	+				+0.4
3,709,956	+				-0.2
3,709,956	+				-0.4
3,709,956	+				-0.6
3,709,956	+				-0.6
3,709,956	+				-0.4
3,709,956	+				+0.4
3,709,956	+				+0.4
3,709,957	-				-1.5
3,709,957	-				-0.2
3,709,957	-				+1.4
3,709,957	-				+1.4
3,709,957	-				-0.1
3,709,957	-				-0.1
3,709,957	-				-0.1
3,709,957	-				+0.6
3,709,957	-				+0.6
3,709,957	-				+0.9
3,709,957	-				-1.0
3,709,958	+				+1.6
3,709,958	+				-0.6
3,709,958	+				+0.4
3,709,958	+				-0.2
3,709,959	-				-0.2
3,709,959	-				-1.8
3,709,959	-				-0.6
3,709,959	-				-0.8
3,709,959	-				+0.9
3,709,959	-				-1.1
3,709,959	-				-1.2
3,710,021	+				-0.4
3,710,021	+				-0.1
3,710,021	+				-0.4
3,710,021	+				-0.7
3,710,021	+				+1.7
3,710,021	+				-0.7
3,710,021	+				+0.8
3,710,021	+				+0.9
3,710,021	+				+0.0
3,710,021	+				-0.9
3,710,022	-				-0.8
3,710,022	-				+0.9
3,710,022	-				-0.3
3,710,022	-				+0.5
3,710,022	-				-0.9
3,710,022	-				-0.1
3,710,022	-				-0.3
3,710,022	-				-1.1
3,710,022	-				-0.3
3,710,022	-				-1.6
3,710,022	-				-0.7
3,710,035	-				+1.3
3,710,051	+				-0.1
3,710,051	+				+1.9
3,710,051	+				-0.6
3,710,051	+				+0.3
3,710,051	+				-0.4
3,710,052	-				-1.4
3,710,052	-				-0.5
3,710,186	-		QEN71_RS16750	0.16	-0.4
3,710,249	+		QEN71_RS16750	0.22	+1.3
3,710,249	+		QEN71_RS16750	0.22	+0.5
3,710,249	+		QEN71_RS16750	0.22	-0.4
3,710,249	+		QEN71_RS16750	0.22	-1.3
3,710,249	+		QEN71_RS16750	0.22	+0.4
3,710,249	+		QEN71_RS16750	0.22	-0.0
3,710,249	+		QEN71_RS16750	0.22	-0.3
3,710,249	+		QEN71_RS16750	0.22	+0.9
3,710,249	+		QEN71_RS16750	0.22	-0.2
3,710,249	+		QEN71_RS16750	0.22	-1.1
3,710,249	+		QEN71_RS16750	0.22	-0.5
3,710,249	+		QEN71_RS16750	0.22	-0.5
3,710,249	+		QEN71_RS16750	0.22	-0.2
3,710,249	+		QEN71_RS16750	0.22	-0.0
3,710,249	+		QEN71_RS16750	0.22	+1.1
3,710,250	-		QEN71_RS16750	0.22	-3.1
3,710,250	-		QEN71_RS16750	0.22	-0.9
3,710,250	-		QEN71_RS16750	0.22	-0.6
3,710,250	-		QEN71_RS16750	0.22	-0.8
3,710,250	-		QEN71_RS16750	0.22	-1.3
3,710,250	-		QEN71_RS16750	0.22	-0.9
3,710,250	-		QEN71_RS16750	0.22	+0.3
3,710,250	-		QEN71_RS16750	0.22	-0.2
3,710,250	-		QEN71_RS16750	0.22	-0.2
3,710,250	-		QEN71_RS16750	0.22	-0.4
3,710,331	+		QEN71_RS16750	0.31	-0.7
3,710,352	+		QEN71_RS16750	0.33	+0.2
3,710,352	+		QEN71_RS16750	0.33	+1.1
3,710,353	-		QEN71_RS16750	0.33	-0.3
3,710,442	+		QEN71_RS16750	0.42	-0.4
3,710,443	-		QEN71_RS16750	0.42	-0.4